Contains flexible and user-friendly functions to find, import, and harmonise epigenomic peaks data from GEO, ENCODE, ROADMAP, and AnnotationHub. Efficiently imports multiple peak files in one function call (either genome-wide or specific regions) using parallelisation. When peaks are not available, automatically calls peaks from bedGraph or bigWig files.
If you use PeakyFinders, please cite:
author1, author2, author3 (publicationYear) articleTitle, journalName; volumeNumber, linkToPublication
if(!require("remotes")) install.packages("remotes")
remotes::install_github("https://github.com/neurogenomics/PeakyFinders")
library(PeakyFinders)UK Dementia Research Institute
Department of Brain Sciences
Faculty of Medicine
Imperial College London
GitHub
DockerHub