From 03f27ca70df76ccab5c15ddeafa7bdb818aa11a3 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Fri, 8 Dec 2023 15:22:17 -0800 Subject: [PATCH] Update changelog --- CHANGES.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/CHANGES.md b/CHANGES.md index 0a56c1c79..734a2b83d 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -32,6 +32,8 @@ * If `TreeTimeError` is encountered Augur now exits with code 2 rather than 0. (This restores the original behaviour.) [#1367][] (@jameshadfield) * ancestral, translate: Avoid incompatibilities with Biopython 1.82. [#1374][] (@victorlin) * ancestral, translate: Address Biopython deprecation warnings. [#1379][] (@victorlin) +* ancestral: Previously, the help text for `--genes` falsely claimed that it could accept a file. Now, it can truly claim that. [#1353][] (@victorlin) +* Deprecate `read_strains` from `augur.utils` and add it to the public API under `augur.io`. [#1353][] (@victorlin) [#1344]: https://github.com/nextstrain/augur/pull/1344 @@ -43,6 +45,7 @@ [#1374]: https://github.com/nextstrain/augur/pull/1374 [#1379]: https://github.com/nextstrain/augur/pull/1379 [#1352]: https://github.com/nextstrain/augur/pull/1352 +[#1353]: https://github.com/nextstrain/augur/pull/1353 ## 23.1.1 (7 November 2023)