From 891587ecffda98d2e716b3b9c5df072a7859a884 Mon Sep 17 00:00:00 2001 From: lhmoncla Date: Tue, 23 Apr 2024 17:38:13 -0400 Subject: [PATCH] adding in exclude sequences which result in improper rooting of the NS tree --- config/dropped_strains_h5n1.txt | 3 +++ config/dropped_strains_h5nx.txt | 5 ++++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/config/dropped_strains_h5n1.txt b/config/dropped_strains_h5n1.txt index d571e15..7d7c606 100755 --- a/config/dropped_strains_h5n1.txt +++ b/config/dropped_strains_h5n1.txt @@ -6,3 +6,6 @@ A/chicken/Dakahlia/110/2007 # divergent A/chicken/Pessel/BPPVRII/2007 # divergent A/duck/China/E26/2012 # divergent A/Fox/Bayern/WS113/2022 +A/mallard/Denmark/091795/2022 +A/Mallard/Netherlands/8/2023 +A/kelpgull/Chile/C35523/2017 \ No newline at end of file diff --git a/config/dropped_strains_h5nx.txt b/config/dropped_strains_h5nx.txt index 5123e4f..437acb3 100755 --- a/config/dropped_strains_h5nx.txt +++ b/config/dropped_strains_h5nx.txt @@ -20,4 +20,7 @@ A/duck/Hunan/1207YYGK111P/2013 A/chicken/Dakahlia/110/2007 # divergent A/chicken/Pessel/BPPVRII/2007 # divergent A/duck/China/E26/2012 # divergent -A/Fox/Bayern/WS113/2022 \ No newline at end of file +A/Fox/Bayern/WS113/2022 +A/mallard/Denmark/091795/2022 +A/Mallard/Netherlands/8/2023 +A/kelpgull/Chile/C35523/2017 \ No newline at end of file