From 6fbb5fec6e1b08dcb91e1e361780b50d075cef3b Mon Sep 17 00:00:00 2001 From: John SJ Anderson Date: Thu, 22 Aug 2024 10:27:48 -0700 Subject: [PATCH] Add TSV version of clade-to-genotype mapping, per PR feedback [#12] --- nextclade/README.md | 3 +++ nextclade/defaults/clade-to-genotype.tsv | 8 ++++++++ 2 files changed, 11 insertions(+) create mode 100644 nextclade/defaults/clade-to-genotype.tsv diff --git a/nextclade/README.md b/nextclade/README.md index fbd5ced..991cabc 100644 --- a/nextclade/README.md +++ b/nextclade/README.md @@ -27,6 +27,9 @@ following genotypes as described in the aforementioned two papers: | Clade VI | South America I | | Clade VII | South America II | +(N.b., this table is available as a TSV in this repo, at +`nextclade/defaults/clade-to-genotype.tsv`.) + ## How to create a new tree * Run the workflow: `nextstrain build .` diff --git a/nextclade/defaults/clade-to-genotype.tsv b/nextclade/defaults/clade-to-genotype.tsv new file mode 100644 index 0000000..ff69d0a --- /dev/null +++ b/nextclade/defaults/clade-to-genotype.tsv @@ -0,0 +1,8 @@ +Clade Genotype +Clade I Angola +Clade II East Africa +Clade III East Central/Africa +Clade IV West Africa I +Clade V West Africa II +Clade VI South America I +Clade VII South America II