From 3e66dda8f7bf19450ab92d4abb6129af8880e4b6 Mon Sep 17 00:00:00 2001
From: Florian De Temmerman <florian.detemmerman@pixelgen.com>
Date: Tue, 17 Oct 2023 16:31:08 +0200
Subject: [PATCH] enable writable tmpfs for singularity/apptainer

---
 nextflow.config | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index 6aabf162..946d7d02 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -161,6 +161,7 @@ profiles {
     singularity {
         singularity.enabled    = true
         singularity.autoMounts = true
+        singularity.runOptions = '--writable-tmpfs'
         conda.enabled          = false
         docker.enabled         = false
         podman.enabled         = false
@@ -199,6 +200,7 @@ profiles {
     apptainer {
         apptainer.enabled      = true
         apptainer.autoMounts   = true
+        apptainer.runOptions   = '--writable-tmpfs'
         conda.enabled          = false
         docker.enabled         = false
         singularity.enabled    = false