From 05cc3970bf142972151bdbe80ab946dc0425e17d Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Thu, 4 Jan 2024 09:44:14 +0000 Subject: [PATCH 1/2] fix to #1150 --- bin/tx2gene.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/tx2gene.py b/bin/tx2gene.py index 963676ef1..d8256f5f9 100755 --- a/bin/tx2gene.py +++ b/bin/tx2gene.py @@ -62,7 +62,7 @@ def discover_transcript_attribute(gtf_file: str, transcripts: Set[str]) -> str: attributes_str = cols[8] attributes = dict(re.findall(r'(\S+) "(.*?)(? Date: Thu, 4 Jan 2024 09:46:09 +0000 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8614fd74e..b4c728e20 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -25,6 +25,7 @@ Special thanks to the following for their contributions to the release: - [PR #1144](https://github.com/nf-core/rnaseq/pull/1144) - Interface to kmer size for pseudoaligners - [PR #1149](https://github.com/nf-core/rnaseq/pull/1149) - Fix and patch version commands for Fastp, FastQC and UMI-tools modules ([#1103](https://github.com/nf-core/rnaseq/issues/1103)) - [PR #1150](https://github.com/nf-core/rnaseq/pull/1150) - Be more flexible on attribute values in GTFs ([#1132](https://github.com/nf-core/rnaseq/issues/1132)) +- [PR #1151](https://github.com/nf-core/rnaseq/pull/1151) - fix to #1150: reinstate conditional ### Parameters