diff --git a/ChangeLog b/ChangeLog index 90209941..4c97d61e 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,4 +1,4 @@ -Version 1.1.0+ +Version 1.2.0 2020-07-12 by luispedro * Add load_fastq_directory to builtin functions * Better messages when using `lock1` * Enable specifying *all* module resources by URL with download on first diff --git a/NGLess/Version.hs b/NGLess/Version.hs index 6883e9c9..e7b576fa 100644 --- a/NGLess/Version.hs +++ b/NGLess/Version.hs @@ -19,7 +19,7 @@ versionStr :: String versionStr = showVersion version dateStr :: String -dateStr = "Unreleased (post v1.1.1)" +dateStr = "12 July 2020" gitHashStr :: String gitHashStr = $(gitHash) diff --git a/README.md b/README.md index 31a6931b..88ccebfa 100644 --- a/README.md +++ b/README.md @@ -100,6 +100,7 @@ The following sequence of commands should download and build the software git clone https://github.com/ngless-toolkit/ngless cd ngless + stack setup make To install, you can use the following command (replace `` with diff --git a/docs/sources/reproducible.md b/docs/sources/reproducible.md index f8783153..ef78ef95 100644 --- a/docs/sources/reproducible.md +++ b/docs/sources/reproducible.md @@ -18,7 +18,7 @@ The `write()` function call supports the argument `auto_comments` which will add (as comments) meta information to the output. In particular, you can use the `{script}` auto comment to add the script to your output. For example: - ngless '0.8' + ngless '1.2' mapped = samfile('input.bam') counted = count(mapped, features=['seqname']) diff --git a/docs/sources/whatsnew.rst b/docs/sources/whatsnew.rst index 9b371226..d63df656 100644 --- a/docs/sources/whatsnew.rst +++ b/docs/sources/whatsnew.rst @@ -3,8 +3,10 @@ What's New (History) ==================== -Version 1.2.0 (Unreleased) --------------------------- +Version 1.2.0 +------------- + +Released *12 July 2020*. User-visible improvements ~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -13,7 +15,6 @@ User-visible improvements to the builtin namespace. This was previously available under the ``mocat`` module, but it had become much more flexible than the original MOCAT version, so it was no longer a descriptive name. - - Better messages in `parallel `__ module when there are no free locks. @@ -25,7 +26,7 @@ Internal improvements - Modules can now specify their annotation as a URL that NGLess downloads on a "as needed" basis: in version 1.1, only FASTA files were supported. - Memory consumption of `count() function `__ has been - improved when using GFF files. + improved when using GFF files (*ca.* ⅓ less memory used). - This one is *hopefully **not** user-visible*: Previously, NGLess would ship the Javascript libraries it uses for the HTML viewer and copy them into all its outputs. Starting in v1.2.0, the HTML viewer links to the live versions