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JoesFlow

The goal of JoesFlow is to analyze high-dimensional single cell data from flow cytometry, scRNA-seq, CITE-seq and any kind of single cell matrix data. JoesFlow utilizes novel scRNA-seq dimension reduction techniques to generate interpretable and informative visualizations that incorporate all aspects of a dataset in an unbiased manner.

Full documentation can be found at https://niaid.github.io/JoesFlow/.