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createMachine.sh
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createMachine.sh
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#!/bin/sh
# Useful external repositories for SuSE.
zypper ar -f http://download.opensuse.org/update/leap/$VERSION_SUSE/ update | echo 'a'
zypper ar -f http://ftp.gwdg.de/pub/linux/packman/suse/openSUSE_Leap_$VERSION_SUSE/ packman | echo 'a'
zypper ar -f http://download.opensuse.org/repositories/Education/openSUSE_Leap_$VERSION_SUSE/ education | echo 'a'
zypper ar -f http://download.opensuse.org/repositories/devel:/libraries:/c_c++/openSUSE_Leap_$VERSION_SUSE/ cplus | echo 'a'
zypper refresh
zypper --non-interactive update
zypper clean
# Install requirements for Orchestra and ESE. Some, like 'rpm' and 'libz' are
# already in the default image.
zypper --non-interactive --gpg-auto-import-keys install \
make imake rsync socat xmessage xclock emacs \
which gzip xorg-x11-fonts libXpm4-32bit libXm4-32bit \
libUil4-32bit libMrm4-32bit glibc-32bit libgcc_s1-32bit \
zlib-devel
zypper clean
# More generic utilities
zypper --non-interactive --gpg-auto-import-keys install \
vim vim-data tcsh sudo tar which less xterm wget zsh \
hostname cmake gcc gcc-c++ xeyes postgresql-plpython \
gcc8 gcc8-c++ gcc8-fortran python3-psycopg2 doxygen \
xfig # texlive-latex texlive-extratools texlive-dvips \
# texlive-beamer texlive-collection-fontsextra \
# texlive-collection-fontsrecommended
zypper clean
# To buld and install AFNI:
zypper --non-interactive --gpg-auto-import-keys install \
libXft-devel libXp-devel libXpm-devel \
libXmu-devel libpng12-devel libjpeg62 \
libXt-devel libXext-devel \
libXi-devel libexpat-devel netpbm m4 \
libnetpbm-devel libGLU1 motif motif-devel \
gsl-devel glu-devel freeglut-devel \
netcdf netcdf-devel glib2-devel R-base-devel
# zypper clean
# Gadgetron and ISMRMRD development:
zypper --non-interactive --gpg-auto-import-keys install \
python3-devel python3-numpy python3-numpy-devel \
python3-matplotlib python3-Sphinx python3-Cython \
python3-six python3-virtualenv libpython2_7-1_0 \
dcmtk dcmtk-devel libdcmtk3_6 \
cblas armadillo-devel glew glew-devel git \
fftw3-devel lapacke-devel pugixml-devel \
openmpi-devel libopenblas_openmp-devel \
libqt4-devel plplot-devel plplotcxx-devel \
python3-torch-devel \
hdf5 hdf5-devel # \ SuSE-supplied HDF version not
# compatible with Orchestra development environment.
# Use libraries supplied with that environment instead
# to build GE-ISMRMRD converter. Use this version for
# gadgetron.
zypper clean
zypper --non-interactive --gpg-auto-import-keys install \
boost-license1_66_0 \
libboost_chrono1_66_0-devel \
libboost_container1_66_0-devel \
libboost_date_time1_66_0-devel \
libboost_filesystem1_66_0-devel \
libboost_math1_66_0-devel \
libboost_numpy-py3-1_66_0-devel \
libboost_program_options1_66_0-devel \
libboost_python-py2_7-1_66_0-devel \
libboost_python-py3-1_66_0-devel \
libboost_regex1_66_0-devel \
libboost_serialization1_66_0-devel \
libboost_signals1_66_0-devel \
libboost_system1_66_0-devel \
libboost_thread1_66_0-devel \
libboost_timer1_66_0-devel \
libboost_test1_66_0-devel \
libboost_random1_66_0-devel
zypper clean
# For Siemens-ISMRMRD converter:
zypper --non-interactive --gpg-auto-import-keys install \
xsd libxerces-c-devel libxslt-devel tinyxml-devel libxml2-devel
zypper clean