Skip to content

Latest commit

 

History

History
83 lines (57 loc) · 3.58 KB

INSTALL.md

File metadata and controls

83 lines (57 loc) · 3.58 KB
Raw

Basic Setup

  • Copy config/database.yml.example to config/database.yml and enter your database connection information.
  • Copy .ruby-gemset.example to .ruby-gemset.
  • Copy .ruby-version.example to .ruby-version.
  • Reload directory to create rvm gemset.

nokogiri

if there are errors with nokogiri compilation with new xcode7: gem install nokogiri -- --with-xml2-include=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/libxml2 --use-system-libraries

openbabel

  • brew install cmake for OSX
  • install openbabel as described in its documentation

rmagick

  • brew install imagemagick gs for OSX
  • apt-get install libmagickcore-dev libmagickwand-dev for linux
  • if installing the rmagick gem fails you may try: IM_PREFIX=$(brew list imagemagick 2>&1 | grep -E 'identify$' | sed 's/bin\/identify$//g') PKG_CONFIG_PATH=${IM_PREFIX}lib/pkgconfig/ C_INCLUDE_PATH=${IM_PREFIX}include/ImageMagick*/ gem install rmagick (OSX only)

inkscape

  • sudo apt-get install inkscape for Linux
  • For Mac OSX, you need to install XQuartz before inkscape: brew install Caskroom/cask/xquartz, and brew install homebrew/gui/inkscape.

Dataset previews

  • brew install imagemagick mplayer for OSX
  • sudo apt-get -y install imagemagick mplayer for Linux

Application Setup

  • Execute bundle install.
  • Execute rake db:reset (this creates and seeds the database).

Environment variables

Production

  • cp .env.production{.example,} # optionally enter SFTP credentials

Deployment notes

The search feature uses the Postgres extension pg_trgm (http://www.postgresql.org/docs/9.3/static/pgtrgm.html). For the first installation on the production machine you have to install the postgres-contrib package in order to enable Postgres extensions. Just restart Postgres after installing the package.

If you like to reset the database (after cap production deploy) you have to execute the following commands (under the assumption your production database is called chemotion)

  • RAILS_ENV=production bundle exec rake db:drop db:create
  • sudo -u postgres psql -d chemotion -c "CREATE EXTENSION pg_trgm;"
  • RAILS_ENV=production bundle exec rake db:migrate db:seed

JS Setup & Testing

  • Install nvm: curl -o- https://raw.githubusercontent.com/creationix/nvm/v0.32.0/install.sh | bash (see https://github.com/creationix/nvm#installation) or for OSX: brew install nvm && echo "source $(brew --prefix nvm)/nvm.sh" >> ~/.profile
  • Execute nvm install nvm will automatically use node 0.10.40 (in order to work with current jest-version)
  • Execute npm install -g npm@3.10.8
  • Execute npm install.

Mailing in Development Environment

Run rake jobs:work for asynchronous handling of email notifications. Run mailcatcher in your console and go to localhost:1080 to see all sent mails.

Icon Font

  • put new icons as SVG files (e.g. '<ICON_NAME>.svg') in app/assets/images/svg_icons
  • run rake icons:compile

Icons are now available as css classes: '.icon-<ICON_NAME'

FontCustom Dependencies

  • brew install fontforge --with-python
  • brew install eot-utils

Docker setup

  • Initial setup: docker-compose up
  • For Linux users: use docker-compose run with user docker, e.g., docker-compose run --user=docker bundle exec rails g migration new_migration

Workarounds:

  • npm packages, database.yml und migrations still need to be performed manually
  • cp config/database.yml{.example,}
  • docker-compose run app bash
  • in the container: $ npm i && bundle exec rake db:setup