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Allow ingress of segmentations in different spaces through --derivatives flag #293

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audreymhoughton opened this issue Jun 7, 2023 · 0 comments · Fixed by #305
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enhancement New feature or request
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@audreymhoughton
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A short summary of what you would like to see in NiBabies.

  • allow ingress of files with this naming structure:
    sub-01_ses-A_space-T1w_desc-aseg_dseg.nii.gz
    sub-01_ses-A_space-T2w_desc-aseg_dseg.nii.gz
    sub-01_ses-A_space-T1w_desc-brain_mask.nii.gz
    sub-01_ses-A_space-T2w_desc-brain_mask.nii.gz
  • with corresponding sidecars with the field ["SpatialReference"](SpatialReference key allowed values) giving the path to the file of the space the brain mask and segmentation are in
    Example: "SpatialReference": ["ses-X/anat/sub-Y_ses-X_run-1_T2w.nii.gz"]

Do you have any interest in helping implement the feature?

No :(

Add any additional information or context about the request here.

I can provide an example --derivatives dir with the corresponding inputs for testing if needed

@audreymhoughton audreymhoughton added the enhancement New feature or request label Jun 7, 2023
@mgxd mgxd added this to the 23.2.0 milestone Jul 14, 2023
@mgxd mgxd closed this as completed in #305 Aug 30, 2023
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