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Traceback (most recent call last):
File "/opt/conda/envs/nibabies/bin/nibabies", line 8, in<module>sys.exit(main())
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/cli/run.py", line 59, in main
retval = build_workflow(config_file)
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/cli/workflow.py", line 76, in build_workflow
retval["workflow"] = init_nibabies_wf(config.execution.unique_labels)
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/workflows/base.py", line 130, in init_nibabies_wf
single_subject_wf = init_single_subject_wf(
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/workflows/base.py", line 459, in init_single_subject_wf
func_preproc_wf = init_func_preproc_wf(bold_file, spaces, has_fieldmap=has_fieldmap)
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/workflows/bold/base.py", line 964, in init_func_preproc_wf
subcortical_mni_alignment_wf = init_subcortical_mni_alignment_wf()
File "/opt/conda/envs/nibabies/lib/python3.10/site-packages/nibabies/workflows/bold/alignment.py", line 144, in init_subcortical_mni_alignment_wf
atlas_xfm = resource_filename("nibabies", "data/MNIInfant_to_MNI1526NLinAsym.mat")
NameError: name 'resource_filename' is not defined
Add any additional information or context about the problem here.
It's a multi-echo infant dataset that @madisoth shared with me.
The text was updated successfully, but these errors were encountered:
What happened?
Running Nibabies on a multi-echo infant dataset led to the error
name 'resource_filename' is not defined
.What command did you use?
singularity run --home $HOME --cleanenv \ -B /cbica/home/salot/datasets/infant_dset:/data \ /cbica/home/salot/singularity/nibabies-24_0_0dev.simg \ /data \ /data/derivatives/nibabies \ participant \ -w /cbica/home/salot/datasets/infant_dset_work \ --nprocs 1 \ --omp-nthreads 1 \ --output-spaces func T1w MNIInfant:cohort-1 \ --me-output-echos \ --project-goodvoxels \ --cifti-output \ --fs-license-file freesurfer_license.txt \ --skip_bids_validation
What version of NiBabies are you using?
v24.1.0.dev17+ge29ee42 (unstable from 2024/02/07)
Relevant log output
Add any additional information or context about the problem here.
It's a multi-echo infant dataset that @madisoth shared with me.
The text was updated successfully, but these errors were encountered: