Big scape

BiG-SCAPE

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

code and conda installation guide at:
https://git.wageningenur.nl/medema-group/BiG-SCAPE

If you have docker installed jus download the image nselem/big-scape:
docker pull nselem/big-scape

And then run the image at the directory where you have your inputdir

docker run -i -t -v $(pwd):/usr/src nselem/big-scape /bin/bash
python /home/BiG-SCAPE/bigscape.py -i myInputfolder -o myOutputFolder