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empty GT fields #6

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kubranarci opened this issue Oct 14, 2024 · 0 comments
Open

empty GT fields #6

kubranarci opened this issue Oct 14, 2024 · 0 comments

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@kubranarci
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When GT field is empty in the input vcf file, using GT reformatting such"

GT: value: $FORMAT/GT number: 1 type: string description: Genotype

leads to have a GT field at format but not in sample (it is being empty)

instead, if we have it like this:

format: GT: value: ./.

it will automatically add ./. without checking if the field is empty.

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