diff --git a/src/mappings/apo_go.sssom.tsv b/src/mappings/apo_go.sssom.tsv new file mode 100644 index 0000000..f1a5db7 --- /dev/null +++ b/src/mappings/apo_go.sssom.tsv @@ -0,0 +1,87 @@ +subject_id subject_label predicate_id object_id object_label comment +APO:0000102 respiratory metabolism skos:exactMatch GO:0045333 cellular respiration +APO:0000101 fermentative metabolism skos:broadMatch GO:0006113 fermentation +APO:0000022 protein activity skos:narrowMatch GO:0003824 catalytic activity +APO:0000024 budding skos:exactMatch GO:0007114 cell budding +APO:0000027 filamentous growth skos:exactMatch GO:0030447 filamentous growth +APO:0000028 invasive growth skos:exactMatch GO:0036267 invasive filamentous growth +APO:0000029 pseudohyphal growth skos:exactMatch GO:0007124 pseudohyphal growth +APO:0000032 mating response skos:broadMatch GO:0019236 response to pheromone +APO:0000033 cell fusion skos:exactMatch GO:0140253 cell-cell fusion +APO:0000035 nuclear fusion during mating skos:exactMatch GO:0048288 nuclear membrane fusion involved in karyogamy +APO:0000036 pheromone production skos:exactMatch GO:0042811 pheromone biosynthetic process +APO:0000037 pheromone sensitivity skos:broadMatch GO:0019236 response to pheromone +APO:0000038 shmoo formation skos:exactMatch GO:0031382 mating projection formation +APO:0000039 meiosis skos:exactMatch GO:0051321 meiotic cell cycle +APO:0000040 meiotic recombination skos:exactMatch GO:0007131 reciprocal meiotic recombination +APO:0000041 sporulation skos:exactMatch GO:0043934 sporulation +APO:0000042 spore germination skos:exactMatch GO:0009847 spore germination +APO:0000043 spore wall formation skos:exactMatch GO:0042244 spore wall assembly +APO:0000046 silencing skos:exactMatch GO:0031507 heterochromatin formation +APO:0000047 transposable element transposition skos:exactMatch GO:0006313 DNA transposition +APO:0000065 flocculation skos:exactMatch GO:0000128 flocculation +APO:0000071 cytokinesis skos:exactMatch GO:0000910 cytokinesis +APO:0000072 mitotic cell cycle skos:exactMatch GO:0000278 mitotic cell cycle +APO:0000073 intracellular transport skos:exactMatch GO:0046907 intracellular transport +APO:0000074 autophagy skos:exactMatch GO:0006914 autophagy +APO:0000075 endocytosis skos:exactMatch GO:0006897 endocytosis +APO:0000076 mitochondrial transport skos:exactMatch GO:0006839 mitochondrial transport +APO:0000077 nuclear transport skos:exactMatch GO:0051169 nuclear transport +APO:0000078 protein secretion skos:exactMatch GO:0009306 protein secretion +APO:0000079 vacuolar transport skos:exactMatch GO:0007034 vacuolar transport +APO:0000096 nutrient utilization skos:exactMatch GO:0031667 response to nutrient levels +APO:0000098 utilization of carbon source skos:exactMatch GO:0015976 carbon utilization +APO:0000099 utilization of nitrogen source skos:exactMatch GO:0019740 nitrogen utilization +APO:0000100 nutrient uptake skos:broadMatch GO:0098739 import across plasma membrane +APO:0000105 mitochondrial genome maintenance skos:exactMatch GO:0000002 mitochondrial genome maintenance +APO:0000123 recovery from pheromone-induced cell cycle arrest skos:exactMatch GO:0000321 re-entry into mitotic cell cycle after pheromone arrest +APO:0000124 pheromone-induced cell cycle arrest skos:exactMatch GO:0000751 mitotic cell cycle G1 arrest in response to pheromone +APO:0000125 utilization of phosphorus source skos:exactMatch GO:0006794 phosphorus utilization +APO:0000126 nuclear import skos:exactMatch GO:0051170 import into nucleus +APO:0000127 nuclear export skos:exactMatch GO:0051168 nuclear export +APO:0000128 peroxisomal transport skos:exactMatch GO:0043574 peroxisomal transport +APO:0000129 protein transport skos:exactMatch GO:0006886 intracellular protein transport +APO:0000130 small molecule transport skos:broadMatch GO:0006810 transport +APO:0000131 protein/peptide modification skos:exactMatch GO:0036211 protein modification process +APO:0000132 RNA localization skos:exactMatch GO:0006403 RNA localization +APO:0000143 chromosome/plasmid maintenance skos:relatedMatch GO:0051276 chromosome organization +APO:0000145 oxidative phosphorylation skos:exactMatch GO:0006119 oxidative phosphorylation +APO:0000155 apoptosis skos:exactMatch GO:0006915 apoptotic process +APO:0000157 utilization of iron source skos:broadMatch GO:0031667 response to nutrient levels +APO:0000159 biofilm formation skos:exactMatch GO:0042710 biofilm formation +APO:0000196 mating type switching skos:exactMatch GO:0007533 mating type switching +APO:0000208 chromosome segregation skos:exactMatch GO:0007059 chromosome segregation +APO:0000219 utilization of sulfur source skos:exactMatch GO:0006791 sulfur utilization +APO:0000220 necrotic cell death skos:exactMatch GO:0097300 programmed necrotic cell death +APO:0000221 septum formation skos:exactMatch GO:0000921 septin ring assembly +APO:0000222 chemical compound excretion skos:broadMatch GO:0007588 excretion +APO:0000225 mitotic recombination skos:exactMatch GO:0006312 mitotic recombination +APO:0000239 pexophagy skos:exactMatch GO:0000425 pexophagy +APO:0000240 mitophagy skos:exactMatch GO:0000423 mitophagy +APO:0000253 cell cycle progression skos:exactMatch GO:0007049 cell cycle +APO:0000254 cell cycle progression in G2 phase skos:exactMatch GO:0000085 mitotic G2 phase +APO:0000255 cell cycle progression in G1 phase skos:exactMatch GO:0000080 mitotic G1 phase +APO:0000256 cell cycle passage through START skos:exactMatch GO:0007089 traversing start control point of mitotic cell cycle +APO:0000257 cell cycle progression through the G2/M phase transition skos:exactMatch GO:0000086 G2/M transition of mitotic cell cycle +APO:0000258 cell cycle progression in M phase skos:exactMatch GO:0000087 mitotic M phase +APO:0000259 cell cycle passage through the metaphaseanaphase transition skos:exactMatch GO:0007091 metaphase/anaphase transition of mitotic cell cycle +APO:0000260 cell cycle progression in anaphase skos:exactMatch GO:0000090 mitotic anaphase +APO:0000262 cell cycle progression in mid anaphase skos:exactMatch GO:0000091 mitotic anaphase A +APO:0000263 cell cycle progression in late anaphase skos:exactMatch GO:0000092 mitotic anaphase B +APO:0000264 cell cycle progression in metaphase skos:exactMatch GO:0000089 mitotic metaphase +APO:0000265 cell cycle progression in telophase skos:exactMatch GO:0000093 mitotic telophase +APO:0000266 cell cycle progression in S phase skos:exactMatch GO:0000084 mitotic S phase +APO:0000267 entry into G0 (stationary phase) skos:exactMatch GO:0070314 G1 to G0 transition +APO:0000268 exit from G0 (stationary phase) skos:exactMatch GO:0045023 G0 to G1 transition +APO:0000269 cell cycle progression through the G1/S phase transition skos:exactMatch GO:0044843 cell cycle G1/S phase transition +APO:0000271 RNA modification skos:exactMatch GO:0009451 RNA modification +APO:0000275 prion inheritance skos:broadMatch GO:0008150 biological_process +APO:0000276 prion formation skos:broadMatch GO:0008150 biological_process +APO:0000277 prion loss skos:broadMatch GO:0008150 biological_process +APO:0000288 adhesion skos:exactMatch GO:0007155 cell adhesion +APO:0000312 cell death skos:exactMatch GO:0008219 cell death +APO:0000338 micronucleophagy skos:broadMatch GO:0044804 nucleophagy +APO:0000339 ribophagy skos:exactMatch GO:0034517 ribophagy +APO:0000340 reticulophagy skos:exactMatch GO:0061709 reticulophagy +APO:0000341 nucleophagy skos:exactMatch GO:0044804 nucleophagy +APO:0000342 late nucleophagy skos:broadMatch GO:0044804 nucleophagy \ No newline at end of file diff --git a/src/mappings/apo_oba.sssom.tsv b/src/mappings/apo_oba.sssom.tsv new file mode 100644 index 0000000..1b414d1 --- /dev/null +++ b/src/mappings/apo_oba.sssom.tsv @@ -0,0 +1,189 @@ +subject_id subject_label predicate_id object_id object_label go go_label observable +APO:0000050 cellular morphology skos:exactMatch OBA:1001065 1 +APO:0000057 nuclear morphology skos:exactMatch OBA:1000019 1 +APO:0000054 cytoskeleton morphology skos:exactMatch OBA:1000013 cytoskeleton morphology 1 +APO:0000058 peroxisomal morphology skos:exactMatch OBA:0005997 1 +APO:0000144 telomere length skos:exactMatch OBA:0003784 1 +APO:0000055 mitochondrial morphology skos:exactMatch OBA:0002821 1 +APO:0000119 size of nucleus skos:exactMatch OBA:0000117 nuclear size 1 +APO:0000052 cell size skos:exactMatch OBA:0000055 cell size 1 +APO:0000141 critical cell size at START (G1 cell-size checkpoint) skos:broadMatch OBA:0000055 1 +APO:0000051 cell shape skos:exactMatch OBA:0000052 1 +APO:0000275 prion inheritance skos:broadMatch OBA:0100002 biological process attribute 1 +APO:0000276 prion formation skos:broadMatch OBA:0100002 biological process attribute 1 +APO:0000277 prion loss skos:broadMatch OBA:0100002 biological process attribute 1 +APO:0000053 cell wall morphology skos:exactMatch OBA:2045461 cell wall morphology GO:0005618 1 +APO:0000056 bud neck morphology skos:exactMatch OBA:2045462 bud neck morphology GO:0005935 1 +APO:0000212 bud morphology skos:exactMatch OBA:2045463 bud morphology GO:0005933 1 +APO:0000059 vacuolar morphology skos:exactMatch OBA:2045464 vacuolar morphology GO:0005773 1 +APO:0000120 actin cytoskeleton morphology skos:exactMatch OBA:2045465 actin cytoskeleton morphology GO:0015629 1 +APO:0000213 spindle morphology skos:exactMatch OBA:2045466 spindle morphology GO:0005819 1 +APO:0000118 nuclear position skos:exactMatch OBA:2045467 nuclear position GO:0005634 1 +APO:0000214 position of spindle pole body skos:exactMatch OBA:2045468 position of spindle pole body GO:0005816 1 +APO:0000193 resistance to enzymatic treatment skos:broadMatch OBA:2045469 response to external stimulus trait GO:0009605 1 +APO:0000104 mitochondrial rho- mutation frequency skos:broadMatch OBA:2045470 mitochondrial genome maintenance trait GO:0000002 1 +APO:0000089 budding index skos:exactMatch OBA:2045471 cell budding trait GO:0007114 1 +APO:0000256 cell cycle passage through START skos:exactMatch OBA:2045472 traversing start control point of mitotic cell cycle trait GO:0007089 traversing start control point of mitotic cell cycle 1 +APO:0000257 cell cycle progression through the G2/M phase transition skos:exactMatch OBA:2045473 G2/M transition of mitotic cell cycle trait GO:0000086 G2/M transition of mitotic cell cycle 1 +APO:0000259 cell cycle passage through the metaphase-anaphase transition skos:exactMatch OBA:2045474 metaphase/anaphase transition of mitotic cell cycle trait GO:0007091 metaphase/anaphase transition of mitotic cell cycle 1 +APO:0000253 cell cycle progression skos:exactMatch OBA:2045475 cell cycle trait GO:0007049 cell cycle 1 +APO:0000254 cell cycle progression in G2 phase skos:exactMatch OBA:2045476 mitotic G2 phase trait GO:0000085 mitotic G2 phase 1 +APO:0000255 cell cycle progression in G1 phase skos:exactMatch OBA:2045477 mitotic G1 phase trait GO:0000080 mitotic G1 phase 1 +APO:0000258 cell cycle progression in M phase skos:exactMatch OBA:2045478 mitotic M phase trait GO:0000087 mitotic M phase 1 +APO:0000260 cell cycle progression in anaphase skos:exactMatch OBA:2045479 mitotic anaphase trait GO:0000090 mitotic anaphase 1 +APO:0000262 cell cycle progression in mid anaphase skos:exactMatch OBA:2045480 mitotic anaphase A trait GO:0000091 mitotic anaphase A 1 +APO:0000263 cell cycle progression in late anaphase skos:exactMatch OBA:2045481 mitotic anaphase B trait GO:0000092 mitotic anaphase B 1 +APO:0000264 cell cycle progression in metaphase skos:exactMatch OBA:2045482 mitotic metaphase trait GO:0000089 mitotic metaphase 1 +APO:0000265 cell cycle progression in telophase skos:exactMatch OBA:2045483 mitotic telophase trait GO:0000093 mitotic telophase 1 +APO:0000266 cell cycle progression in S phase skos:exactMatch OBA:2045484 mitotic S phase trait GO:0000084 mitotic S phase 1 +APO:0000267 entry into G0 (stationary phase) skos:exactMatch OBA:2045485 G1 to G0 transition trait GO:0070314 G1 to G0 transition 1 +APO:0000268 exit from G0 (stationary phase) skos:exactMatch OBA:2045486 G0 to G1 transition trait GO:0045023 G0 to G1 transition 1 +APO:0000269 cell cycle progression through the G1/S phase transition skos:exactMatch OBA:2045487 cell cycle G1/S phase transition trait GO:0044843 cell cycle G1/S phase transition 1 +APO:0000102 respiratory metabolism skos:exactMatch OBA:2045488 cellular respiration trait GO:0045333 cellular respiration 1 +APO:0000043 spore wall formation skos:exactMatch OBA:2045489 ascospore wall assembly trait GO:0030476 ascospore wall assembly 1 +APO:0000310 growth in exponential phase skos:broadMatch OBA:2045490 cell growth trait GO:0016049 cell growth 1 +APO:0000076 mitochondrial transport skos:exactMatch OBA:2045491 mitochondrial transport trait GO:0006839 mitochondrial transport 1 +APO:0000101 fermentative metabolism skos:broadMatch OBA:2045492 fermentation trait GO:0006113 fermentation 1 +APO:0000022 protein activity skos:narrowMatch OBA:2045493 catalytic activity trait GO:0003824 catalytic activity 1 +APO:0000024 budding skos:exactMatch OBA:2045471 cell budding trait GO:0007114 cell budding 1 +APO:0000027 filamentous growth skos:exactMatch OBA:2045494 filamentous growth trait GO:0030447 filamentous growth 1 +APO:0000028 invasive growth skos:exactMatch OBA:2045495 invasive filamentous growth trait GO:0036267 invasive filamentous growth 1 +APO:0000029 pseudohyphal growth skos:exactMatch OBA:2045496 pseudohyphal growth trait GO:0007124 pseudohyphal growth 1 +APO:0000032 mating response skos:broadMatch OBA:2045497 response to pheromone trait GO:0019236 response to pheromone 1 +APO:0000033 cell fusion skos:exactMatch OBA:2045498 cell-cell fusion trait GO:0140253 cell-cell fusion 1 +APO:0000035 nuclear fusion during mating skos:exactMatch OBA:2045499 nuclear membrane fusion involved in karyogamy trait GO:0048288 nuclear membrane fusion involved in karyogamy 1 +APO:0000036 pheromone production skos:exactMatch OBA:2045500 pheromone biosynthetic process trait GO:0042811 pheromone biosynthetic process 1 +APO:0000037 pheromone sensitivity skos:broadMatch OBA:2045497 response to pheromone trait GO:0019236 response to pheromone 1 +APO:0000038 shmoo formation skos:exactMatch OBA:2045501 mating projection formation trait GO:0031382 mating projection formation 1 +APO:0000039 meiosis skos:exactMatch OBA:2045502 meiotic cell cycle trait GO:0051321 meiotic cell cycle 1 +APO:0000040 meiotic recombination skos:exactMatch OBA:2045503 reciprocal meiotic recombination trait GO:0007131 reciprocal meiotic recombination 1 +APO:0000041 sporulation skos:exactMatch OBA:2045504 sporulation trait GO:0043934 sporulation 1 +APO:0000042 spore germination skos:exactMatch OBA:2045505 spore germination trait GO:0009847 spore germination 1 +APO:0000046 silencing skos:exactMatch OBA:2045506 heterochromatin formation trait GO:0031507 heterochromatin formation 1 +APO:0000047 transposable element transposition skos:exactMatch OBA:2045507 DNA transposition trait GO:0006313 DNA transposition 1 +APO:0000065 flocculation skos:exactMatch OBA:2045508 flocculation trait GO:0000128 flocculation 1 +APO:0000071 cytokinesis skos:exactMatch OBA:2045509 cytokinesis trait GO:0000910 cytokinesis 1 +APO:0000072 mitotic cell cycle skos:exactMatch OBA:2045510 mitotic cell cycle trait GO:0000278 mitotic cell cycle 1 +APO:0000073 intracellular transport skos:exactMatch OBA:2045511 intracellular transport trait GO:0046907 intracellular transport 1 +APO:0000074 autophagy skos:exactMatch OBA:2045512 autophagy trait GO:0006914 autophagy 1 +APO:0000075 endocytosis skos:exactMatch OBA:2045513 endocytosis trait GO:0006897 endocytosis 1 +APO:0000077 nuclear transport skos:exactMatch OBA:2045514 nuclear transport trait GO:0051169 nuclear transport 1 +APO:0000078 protein secretion skos:exactMatch OBA:2045515 protein secretion trait GO:0009306 protein secretion 1 +APO:0000079 vacuolar transport skos:exactMatch OBA:2045516 vacuolar transport trait GO:0007034 vacuolar transport 1 +APO:0000096 nutrient utilization skos:exactMatch OBA:2045517 response to nutrient levels trait GO:0031667 response to nutrient levels 1 +APO:0000098 utilization of carbon source skos:exactMatch OBA:2045518 carbon utilization trait GO:0015976 carbon utilization 1 +APO:0000099 utilization of nitrogen source skos:exactMatch OBA:2045519 nitrogen utilization trait GO:0019740 nitrogen utilization 1 +APO:0000100 nutrient uptake skos:broadMatch OBA:2045520 import across plasma membrane trait GO:0098739 import across plasma membrane 1 +APO:0000105 mitochondrial genome maintenance skos:exactMatch OBA:2045470 mitochondrial genome maintenance trait GO:0000002 mitochondrial genome maintenance 1 +APO:0000123 recovery from pheromone-induced cell cycle arrest skos:exactMatch OBA:2045521 re-entry into mitotic cell cycle after pheromone arrest trait GO:0000321 re-entry into mitotic cell cycle after pheromone arrest 1 +APO:0000124 pheromone-induced cell cycle arrest skos:exactMatch OBA:2045522 mitotic cell cycle G1 arrest in response to pheromone trait GO:0000751 mitotic cell cycle G1 arrest in response to pheromone 1 +APO:0000125 utilization of phosphorus source skos:exactMatch OBA:2045523 phosphorus utilization trait GO:0006794 phosphorus utilization 1 +APO:0000126 nuclear import skos:exactMatch OBA:2045524 import into nucleus trait GO:0051170 import into nucleus 1 +APO:0000127 nuclear export skos:exactMatch OBA:2045525 nuclear export trait GO:0051168 nuclear export 1 +APO:0000128 peroxisomal transport skos:exactMatch OBA:2045526 peroxisomal transport trait GO:0043574 peroxisomal transport 1 +APO:0000129 protein transport skos:exactMatch OBA:2045527 intracellular protein transport trait GO:0006886 intracellular protein transport 1 +APO:0000130 small molecule transport skos:broadMatch OBA:2045528 transport trait GO:0006810 transport 1 +APO:0000131 protein/peptide modification skos:exactMatch OBA:2045529 protein modification process trait GO:0036211 protein modification process 1 +APO:0000132 RNA localization skos:exactMatch OBA:2045530 RNA localization trait GO:0006403 RNA localization 1 +APO:0000143 chromosome/plasmid maintenance skos:relatedMatch OBA:2045531 chromosome organization trait GO:0051276 chromosome organization 1 +APO:0000145 oxidative phosphorylation skos:exactMatch OBA:2045532 oxidative phosphorylation trait GO:0006119 oxidative phosphorylation 1 +APO:0000155 apoptosis skos:exactMatch OBA:2045533 apoptotic process trait GO:0006915 apoptotic process 1 +APO:0000157 utilization of iron source skos:broadMatch OBA:2045517 response to nutrient levels trait GO:0031667 response to nutrient levels 1 +APO:0000159 biofilm formation skos:exactMatch OBA:2045534 biofilm formation trait GO:0042710 biofilm formation 1 +APO:0000196 mating type switching skos:exactMatch OBA:2045535 mating type switching trait GO:0007533 mating type switching 1 +APO:0000208 chromosome segregation skos:exactMatch OBA:2045536 chromosome segregation trait GO:0007059 chromosome segregation 1 +APO:0000219 utilization of sulfur source skos:exactMatch OBA:2045537 sulfur utilization trait GO:0006791 sulfur utilization 1 +APO:0000220 necrotic cell death skos:exactMatch OBA:2045538 programmed necrotic cell death trait GO:0097300 programmed necrotic cell death 1 +APO:0000221 septum formation skos:exactMatch OBA:2045539 septin ring assembly trait GO:0000921 septin ring assembly 1 +APO:0000222 chemical compound excretion skos:broadMatch OBA:2045540 excretion trait GO:0007588 excretion 1 +APO:0000225 mitotic recombination skos:exactMatch OBA:2045541 mitotic recombination trait GO:0006312 mitotic recombination 1 +APO:0000239 pexophagy skos:exactMatch OBA:2045542 pexophagy trait GO:0000425 pexophagy 1 +APO:0000240 mitophagy skos:exactMatch OBA:2045543 mitophagy trait GO:0000423 mitophagy 1 +APO:0000271 RNA modification skos:exactMatch OBA:2045544 RNA modification trait GO:0009451 RNA modification 1 +APO:0000288 adhesion skos:exactMatch OBA:2045545 cell adhesion trait GO:0007155 cell adhesion 1 +APO:0000312 cell death skos:exactMatch OBA:2045546 cell death trait GO:0008219 cell death 1 +APO:0000338 micronucleophagy skos:broadMatch OBA:2045547 nucleophagy trait GO:0044804 nucleophagy 1 +APO:0000339 ribophagy skos:exactMatch OBA:2045548 ribophagy trait GO:0034517 ribophagy 1 +APO:0000340 reticulophagy skos:exactMatch OBA:2045549 reticulophagy trait GO:0061709 reticulophagy 1 +APO:0000341 nucleophagy skos:exactMatch OBA:2045547 nucleophagy trait GO:0044804 nucleophagy 1 +APO:0000342 late nucleophagy skos:broadMatch OBA:2045547 nucleophagy trait GO:0044804 nucleophagy 1 + +APO:0000200 budding pattern skos:exactMatch 1 +APO:0000025 axial budding pattern skos:exactMatch 1 +APO:0000026 bipolar budding pattern skos:exactMatch 1 + +APO:0000223 mating projection morphology skos:exactMatch 1 +APO:0000226 subcellular morphology skos:exactMatch 1 +APO:0000243 Golgi morphology skos:exactMatch 1 +APO:0000270 endoplasmic reticulum morphology skos:exactMatch 1 +APO:0000273 nucleolar morphology skos:exactMatch 1 +APO:0000335 size of nucleolus skos:exactMatch 1 +APO:0000044 sporulation efficiency skos:exactMatch 1 +APO:0000111 viability skos:exactMatch 1 +APO:0000048 virulence skos:exactMatch 1 +APO:0000216 fitness skos:exactMatch 1 +APO:0000218 redox state skos:exactMatch 1 +APO:0000297 mitochondrial distribution skos:exactMatch 1 +APO:0000298 peroxisomal distribution skos:exactMatch 1 +APO:0000299 vacuolar distribution skos:exactMatch 1 +APO:0000300 endoplasmic reticulum distribution skos:exactMatch 1 +APO:0000301 Golgi distribution skos:exactMatch 1 +APO:0000302 vesicle distribution skos:exactMatch 1 +APO:0000327 hydrostatic pressure resistance skos:exactMatch 1 +APO:0000034 mating efficiency skos:exactMatch 1 +APO:0000110 competitive fitness skos:exactMatch 1 +APO:0000315 plasma membrane morphology skos:exactMatch 1 +APO:0000242 lipid particle morphology skos:exactMatch 1 +APO:0000303 endomembrane system morphology skos:exactMatch 1 +APO:0000316 chronological lifespan skos:exactMatch 1 +APO:0000030 lifespan skos:exactMatch 1 +APO:0000317 replicative lifespan skos:exactMatch 1 +APO:0000307 anaerobic growth skos:exactMatch 1 +APO:0000308 fermentative growth skos:exactMatch 1 +APO:0000309 respiratory growth skos:exactMatch 1 +APO:0000095 chemical compound accumulation skos:exactMatch 1 +APO:0000109 survival rate in stationary phase skos:exactMatch 1 +APO:0000209 protein/peptide distribution skos:exactMatch 1 + +APO:0000149 protein/peptide accumulation skos:exactMatch 1 +APO:0000224 RNA accumulation skos:exactMatch 1 +APO:0000274 prion state skos:exactMatch 1 + +APO:0000197 colony sectoring skos:exactMatch 1 +APO:0000060 colony appearance skos:exactMatch 1 +APO:0000061 colony color skos:exactMatch 1 +APO:0000062 colony shape skos:exactMatch 1 +APO:0000063 colony size skos:exactMatch 1 +APO:0000064 liquid culture appearance skos:exactMatch 1 + +APO:0000092 temperature sensitive growth skos:exactMatch 1 +APO:0000093 thermotolerance skos:exactMatch 1 +APO:0000333 acquired thermotolerance skos:exactMatch 1 +APO:0000334 innate thermotolerance skos:exactMatch 1 +APO:0000199 chitin deposition skos:exactMatch 1 +APO:0000106 vegetative growth skos:exactMatch 1 + + 1 +APO:0000194 ionizing radiation resistance skos:exactMatch 1 +APO:0000195 gamma ray resistance skos:exactMatch 1 +APO:0000198 mutation frequency skos:exactMatch 1 +APO:0000080 stress resistance skos:exactMatch 1 +APO:0000081 killer toxin resistance skos:exactMatch 1 +APO:0000082 osmotic stress resistance skos:exactMatch 1 +APO:0000083 oxidative stress resistance skos:exactMatch 1 +APO:0000084 radiation resistance skos:exactMatch 1 +APO:0000085 UV resistance skos:exactMatch 1 +APO:0000086 X ray resistance skos:exactMatch 1 +APO:0000087 resistance to chemicals skos:exactMatch 1 +APO:0000090 metal resistance skos:exactMatch 1 +APO:0000091 starvation resistance skos:exactMatch 1 +APO:0000201 acid pH resistance skos:exactMatch 1 +APO:0000202 alkaline pH resistance skos:exactMatch 1 +APO:0000203 hypoosmotic stress resistance skos:exactMatch 1 +APO:0000204 hyperosmotic stress resistance skos:exactMatch 1 +APO:0000205 ionic stress resistance skos:exactMatch 1 +APO:0000147 heat sensitivity skos:exactMatch 1 +APO:0000148 cold sensitivity skos:exactMatch 1 +APO:0000326 desiccation resistance skos:exactMatch 1 +APO:0000241 freeze-thaw resistance skos:exactMatch 1 +APO:0000215 toxin resistance skos:exactMatch 1 \ No newline at end of file diff --git a/src/mappings/apo_pato.sssom.tsv b/src/mappings/apo_pato.sssom.tsv new file mode 100644 index 0000000..b1782c5 --- /dev/null +++ b/src/mappings/apo_pato.sssom.tsv @@ -0,0 +1,25 @@ +subject_id subject_label predicate_id object_id object_label comment observable? +APO:0000003 decreased skos:exactMatch PATO:0002301 decreased quality #N/A +APO:0000004 increased skos:exactMatch PATO:0002300 increased quality #N/A +APO:0000112 inviable skos:exactMatch PATO:0000718 lethal (sensu genetics) Alternatively: PATO:0001422 dead 1 +APO:0000113 viable skos:exactMatch PATO:0000719 viable 1 +APO:0000002 abnormal skos:exactMatch PATO:0000069 deviation (from_normal) #N/A +APO:0000117 normal skos:exactMatch PATO:0000461 normal #N/A +APO:0000245 decreased rate skos:exactMatch PATO:0000911 decreased rate #N/A +APO:0000152 haploinsufficient skos:broadMatch PATO:0000069 deviation (from_normal) This is a class which is an amalgam of phenotype and genotype. 1 +APO:0000005 absent skos:exactMatch PATO:0000462 absent #N/A +APO:0000097 auxotrophy skos:exactMatch PATO:0000422 auxotrophic 1 +APO:0000246 increased rate skos:exactMatch PATO:0000912 increased rate #N/A +APO:0000252 normal rate skos:exactMatch PATO:0045000 normal rate #N/A +APO:0000250 arrested skos:exactMatch PATO:0000297 arrested #N/A +APO:0000249 delayed skos:exactMatch PATO:0000502 delayed #N/A +APO:0000330 haploproficient skos:broadMatch PATO:0000719 viable This is a class which is an amalgam of phenotype and genotype. 1 +APO:0000045 sterile skos:exactMatch PATO:0000956 sterile 1 +APO:0000248 increased duration skos:exactMatch PATO:0000498 increased duration #N/A +APO:0000251 premature skos:exactMatch PATO:0000694 premature #N/A +APO:0000247 decreased duration skos:exactMatch PATO:0000499 decreased duration #N/A +APO:0000149 protein/peptide accumulation skos:broadMatch PATO:0002269 accumulation 1 +APO:0000153 petite skos:broadMatch PATO:0040045 population growth rate This is a complex phenotype. It can be modelled as 1: abnormal GO:0009060 aerobic respiration, or 2: decreased colony size. 1 +APO:0000154 petite-negative skos:broadMatch PATO:0040045 population growth rate This is a conditional phenotype, where the observable characteristics depend on a particular genotype. In other words, this class is an amalgam of phenotype and genotype. 1 +APO:0000336 aneuploidy skos:exactMatch PATO:0001385 1 +APO:0000337 polyploidy skos:exactMatch PATO:0001377 1 \ No newline at end of file