docs/workflow_metaphlan3.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 16 -->
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<title>16</title>
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<title>0&#45;&gt;16</title>
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<!-- 1&#45;&gt;0 -->
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<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<text text-anchor="middle" x="115.5" y="-514" font-family="sans" font-size="10.00">sample: bg1_ag1_s1</text>
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<!-- 2&#45;&gt;1 -->
<g id="edge3" class="edge">
<title>2&#45;&gt;1</title>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<!-- 2&#45;&gt;5 -->
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<title>2&#45;&gt;5</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="121.5" y="-447.5" font-family="sans" font-size="10.00">raw_report</text>
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<!-- 3&#45;&gt;0 -->
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<title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="289.5" y="-514" font-family="sans" font-size="10.00">sample: bg1_ag1_s2</text>
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<!-- 4&#45;&gt;3 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M248.4,-503.88C223.34,-493.43 191.3,-480.08 165.69,-469.41"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="166.8,-466.08 156.22,-465.47 164.1,-472.54 166.8,-466.08"/>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
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<!-- 4&#45;&gt;6 -->
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<title>4&#45;&gt;6</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="318.45,-478.5 320.48,-468.1 312.41,-474.96 318.45,-478.5"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<!-- 5&#45;&gt;8 -->
<g id="edge9" class="edge">
<title>5&#45;&gt;8</title>
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<polygon fill="grey" stroke="grey" stroke-width="2" points="200.98,-403.4 193.3,-396.1 194.76,-406.6 200.98,-403.4"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#566bd8" stroke-width="2" d="M448,-396C448,-396 377,-396 377,-396 371,-396 365,-390 365,-384 365,-384 365,-372 365,-372 365,-366 371,-360 377,-360 377,-360 448,-360 448,-360 454,-360 460,-366 460,-372 460,-372 460,-384 460,-384 460,-390 454,-396 448,-396"/>
<text text-anchor="middle" x="412.5" y="-375.5" font-family="sans" font-size="10.00">rmhost_bowtie2</text>
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<!-- 5&#45;&gt;10 -->
<g id="edge11" class="edge">
<title>5&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M266.98,-432.05C293.9,-422.24 327.98,-409.82 356.39,-399.46"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="298.5" y="-375.5" font-family="sans" font-size="10.00">trimming_report</text>
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<!-- 6&#45;&gt;9 -->
<g id="edge10" class="edge">
<title>6&#45;&gt;9</title>
<path fill="none" stroke="grey" stroke-width="2" d="M322.59,-431.7C318.95,-423.73 314.55,-414.1 310.51,-405.26"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="313.66,-403.74 306.32,-396.1 307.29,-406.65 313.66,-403.74"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="529.5" y="-375.5" font-family="sans" font-size="10.00">rmhost_bowtie2</text>
</g>
<!-- 6&#45;&gt;12 -->
<g id="edge13" class="edge">
<title>6&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M376.65,-432.76C405.15,-422.74 441.92,-409.81 472.26,-399.13"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="473.59,-402.38 481.87,-395.76 471.27,-395.77 473.59,-402.38"/>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#56b9d8" stroke-width="2" d="M218,-324C218,-324 109,-324 109,-324 103,-324 97,-318 97,-312 97,-312 97,-300 97,-300 97,-294 103,-288 109,-288 109,-288 218,-288 218,-288 224,-288 230,-294 230,-300 230,-300 230,-312 230,-312 230,-318 224,-324 218,-324"/>
<text text-anchor="middle" x="163.5" y="-303.5" font-family="sans" font-size="10.00">trimming_report_merge</text>
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<!-- 7&#45;&gt;16 -->
<g id="edge20" class="edge">
<title>7&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M168.08,-287.87C174.59,-263.56 186.56,-218.82 194.27,-190.01"/>
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<!-- 8&#45;&gt;7 -->
<g id="edge7" class="edge">
<title>8&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M179.31,-359.7C176.97,-351.9 174.15,-342.51 171.55,-333.83"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="174.86,-332.68 168.63,-324.1 168.15,-334.69 174.86,-332.68"/>
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<!-- 9&#45;&gt;7 -->
<g id="edge8" class="edge">
<title>9&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M265.48,-359.88C247.42,-350.51 224.85,-338.81 205.55,-328.8"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="207.14,-325.69 196.65,-324.19 203.92,-331.9 207.14,-325.69"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#56d8c1" stroke-width="2" d="M322.5,-324C322.5,-324 260.5,-324 260.5,-324 254.5,-324 248.5,-318 248.5,-312 248.5,-312 248.5,-300 248.5,-300 248.5,-294 254.5,-288 260.5,-288 260.5,-288 322.5,-288 322.5,-288 328.5,-288 334.5,-294 334.5,-300 334.5,-300 334.5,-312 334.5,-312 334.5,-318 328.5,-324 322.5,-324"/>
<text text-anchor="middle" x="291.5" y="-303.5" font-family="sans" font-size="10.00">rmhost_report</text>
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<!-- 10&#45;&gt;14 -->
<g id="edge17" class="edge">
<title>10&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M382.9,-359.88C366.93,-350.64 347.04,-339.13 329.89,-329.21"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="331.62,-326.17 321.21,-324.19 328.12,-332.23 331.62,-326.17"/>
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<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M460.5,-324C460.5,-324 364.5,-324 364.5,-324 358.5,-324 352.5,-318 352.5,-312 352.5,-312 352.5,-300 352.5,-300 352.5,-294 358.5,-288 364.5,-288 364.5,-288 460.5,-288 460.5,-288 466.5,-288 472.5,-294 472.5,-300 472.5,-300 472.5,-312 472.5,-312 472.5,-318 466.5,-324 460.5,-324"/>
<text text-anchor="middle" x="412.5" y="-303.5" font-family="sans" font-size="10.00">profiling_metaphlan3</text>
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<!-- 10&#45;&gt;19 -->
<g id="edge25" class="edge">
<title>10&#45;&gt;19</title>
<path fill="none" stroke="grey" stroke-width="2" d="M412.5,-359.7C412.5,-351.98 412.5,-342.71 412.5,-334.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="416,-334.1 412.5,-324.1 409,-334.1 416,-334.1"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d8c356" stroke-width="2" stroke-dasharray="5,2" d="M543.5,-468C543.5,-468 439.5,-468 439.5,-468 433.5,-468 427.5,-462 427.5,-456 427.5,-456 427.5,-444 427.5,-444 427.5,-438 433.5,-432 439.5,-432 439.5,-432 543.5,-432 543.5,-432 549.5,-432 555.5,-438 555.5,-444 555.5,-444 555.5,-456 555.5,-456 555.5,-462 549.5,-468 543.5,-468"/>
<text text-anchor="middle" x="491.5" y="-447.5" font-family="sans" font-size="10.00">rmhost_bowtie2_index</text>
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<!-- 11&#45;&gt;10 -->
<g id="edge12" class="edge">
<title>11&#45;&gt;10</title>
<path fill="none" stroke="grey" stroke-width="2" d="M471.97,-431.7C462.12,-422.97 450.01,-412.24 439.3,-402.75"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="441.61,-400.12 431.8,-396.1 436.97,-405.36 441.61,-400.12"/>
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<!-- 11&#45;&gt;12 -->
<g id="edge14" class="edge">
<title>11&#45;&gt;12</title>
<path fill="none" stroke="grey" stroke-width="2" d="M500.89,-431.7C505.26,-423.64 510.56,-413.89 515.4,-404.98"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="518.52,-406.56 520.21,-396.1 512.37,-403.22 518.52,-406.56"/>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<text text-anchor="middle" x="533.5" y="-303.5" font-family="sans" font-size="10.00">rmhost_report</text>
</g>
<!-- 12&#45;&gt;15 -->
<g id="edge18" class="edge">
<title>12&#45;&gt;15</title>
<path fill="none" stroke="grey" stroke-width="2" d="M530.49,-359.7C530.93,-351.98 531.46,-342.71 531.95,-334.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="535.45,-334.29 532.52,-324.1 528.46,-333.89 535.45,-334.29"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
<path fill="none" stroke="#56d873" stroke-width="2" d="M702.5,-324C702.5,-324 606.5,-324 606.5,-324 600.5,-324 594.5,-318 594.5,-312 594.5,-312 594.5,-300 594.5,-300 594.5,-294 600.5,-288 606.5,-288 606.5,-288 702.5,-288 702.5,-288 708.5,-288 714.5,-294 714.5,-300 714.5,-300 714.5,-312 714.5,-312 714.5,-318 708.5,-324 702.5,-324"/>
<text text-anchor="middle" x="654.5" y="-303.5" font-family="sans" font-size="10.00">profiling_metaphlan3</text>
</g>
<!-- 12&#45;&gt;20 -->
<g id="edge26" class="edge">
<title>12&#45;&gt;20</title>
<path fill="none" stroke="grey" stroke-width="2" d="M560.08,-359.88C576.57,-350.64 597.12,-339.13 614.84,-329.21"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="616.79,-332.13 623.8,-324.19 613.37,-326.02 616.79,-332.13"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="272.5" y="-231.5" font-family="sans" font-size="10.00">rmhost_report_merge</text>
</g>
<!-- 13&#45;&gt;16 -->
<g id="edge21" class="edge">
<title>13&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M254.95,-215.7C246.27,-207.14 235.64,-196.66 226.15,-187.3"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="228.43,-184.63 218.85,-180.1 223.51,-189.62 228.43,-184.63"/>
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<!-- 14&#45;&gt;13 -->
<g id="edge15" class="edge">
<title>14&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M286.8,-287.7C284.69,-279.9 282.14,-270.51 279.78,-261.83"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="283.14,-260.84 277.14,-252.1 276.38,-262.67 283.14,-260.84"/>
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<!-- 15&#45;&gt;13 -->
<g id="edge16" class="edge">
<title>15&#45;&gt;13</title>
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<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
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<text text-anchor="middle" x="270.5" y="-87.5" font-family="sans" font-size="10.00">qcreport_plot</text>
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<!-- 16&#45;&gt;17 -->
<g id="edge22" class="edge">
<title>16&#45;&gt;17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M218.56,-143.7C227,-135.14 237.32,-124.66 246.54,-115.3"/>
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<!-- 21 -->
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