You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
With the 0.2.0 rewrite we've probably changed our performance slightly (although I've run the benchmarks against both and they're very comparable). I removed the section we have in the README until we can benchmark our performance against readfq and Biopython again and maybe rust-bio? (and pfasta? See issue #2 ).
The text was updated successfully, but these errors were encountered:
If you plan on releasing some new performance stats, definitely compare against the latest kseq. With a recent patch it now parses up to 2GB/s on a good machine with some tailwind.
For 0.3.0 I redid the benchmarks with criterion and added benchmarks against other Rust FASTX parsers so I think this is closed.
Note that our microbenchmark performance now seems to be heavily biased on the buffer size; we see best performance with a buffer size of 256kb on large (~Gb) files, but suffer on the microbenchmarks where a buffer size of 8-16kb seems to be optimal.
With the 0.2.0 rewrite we've probably changed our performance slightly (although I've run the benchmarks against both and they're very comparable). I removed the section we have in the README until we can benchmark our performance against readfq and Biopython again and maybe rust-bio? (and pfasta? See issue #2 ).
The text was updated successfully, but these errors were encountered: