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OMH Body Temperature DataPoint.md

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OMH Body Temperature DataPoint

OMH Body Temperature DataPoint to FHIR Observation Detailed Mapping

The following Table provides the detailed mapping for the OMH Body Temperature DataPoint to the OMH to FHIR Observation Profile TODO: add link to profile and mapping table:

Index OMH Body Temperature Element FHIR Attribute Mapping Instructions
1 body-temperature-3.0.json OMH to FHIR Observation Profile
2.1 body_temperature Observation.valueQuantity see valueQuantity elements below
2.2 body_temperature.value Observation.valueQuantity.value = body_temperature.value
2.3 body_temperature.unit Observation.valueQuantity.unit = body_temperature.unit
2.4 body_temperature.unit Observation.valueQuantity.system fixed to 'http://unitsofmeasure.org'
2.5 body_temperature.unit Observation.valueQuantity.code Map body_temperature.unit to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table
3 body.effective_time_frame Observation.effective[x] Mappping depends on type- see below
3.1 body.effective_time_frame.date_time Observation.effectiveDateTime = body.effective_time_frame.date_time
3.2 body.effective_time_frame.time_interval Observation.effectivePeriod see effectivePeriod elements below
3.2.1 body.effective_time_frame.time_interval.start_date_time Observation.effectivePeriod.start = body.effective_time_frame.time_interval.start_date_time
3.2.2 body.effective_time_frame.time_interval.end_date_time Observation.effectivePeriod.end = body.effective_time_frame.time_interval.end_date_time
8.1 body.measurement_location Observation.bodySite See bodySite elements below
8.2 body.measurement_location Observation.bodySIte.coding[0].code Map body.measurement_location to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table
8.3 body.measurement_location Observation.bodySIte.coding[0].system Map body.measurement_location to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table
8.4 body.measurement_location Observation.bodySIte.coding[0].display Map body.measurement_location to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table
9 body.descriptive_statistic Observation.code.coding[1] Map descriptive statistic to the OMH to FHIR additional Observation codings ( code system http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes).
9.1 body.descriptive_statistic Observation.code.coding[1].code concatenation of header.schema_id.name = 'body-temperature' + '-' + body.descriptive_statistic for example= body-temperature-maximum
9.2 body.descriptive_statistic Observation.code.coding[1].system fixed to '"http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes"'
9.3 body.descriptive_statistic Observation.code.coding[1].display concatenation of header.schema_id.name = 'body-temperature' + '-' + body.descriptive_statistic for example= body-temperature-maximum
10 body.temporal_relationship_to_physical_activity Observation.component[0] A mapping between temporal-relationship-to-physical-activity and FHIR Observation Component data elements. Multiple components mapping are appended as a list
10.A1 body.temporal_relationship_to_physical_activity Observation.component[0].code A mapping between temporal-relationship-to-physical-activity and FHIR Observation Component.code data elements.
10.A2 body.temporal_relationship_to_physical_activity Observation.component[0].code.coding[1].code = 'relative-to-activity'
10.A3 body.temporal_relationship_to_physical_activity Observation.component[0].code.coding[1].system = "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes"
10.A4 body.temporal_relationship_to_physical_activity Observation.component[0].code.coding[1].display = 'OMH to FHIR Temporal Relationship To Physical Activity'
10.B1 body.temporal_relationship_to_physical_activity Observation.component[0].valueCodeableConcept A mapping between body.temporal_relationship_to_physical_activity and FHIR Observation Component.valueCodeableConcept data elements.
10.B2 body.temporal_relationship_to_physical_activity Observation.component[0].valueCodeableConcept.coding[0].code Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table
10.B3 body.temporal_relationship_to_physical_activity Observation.component[0].valueCodeableConcept.coding[0].system Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table
10.B4 body.temporal_relationship_to_physical_activity Observation.component[0].valueCodeableConcept.coding[0].display Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table
10.B5 body.temporal_relationship_to_physical_activity Observation.component[0].valueCodeableConcept.text = body.temporal_relationship_to_physical_activity
11 body.temporal_relationship_to_sleep Observation.component[0] A mapping table between OMH schema ('datapoint_variables') and FHIR Observation Component data elements. Multiple components mapping are appended as a list
11.A1 body.temporal_relationship_to_sleep Observation.component[0].code A mapping between temporal-relationship-to-sleep and FHIR Observation Component.code data elements.
11.A2 body.temporal_relationship_to_sleep Observation.component[0].code.coding[1].code = 'relative-to-sleep'
11.A3 body.temporal_relationship_to_sleep Observation.component[0].code.coding[1].system = "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes"
11.A4 body.temporal_relationship_to_sleep Observation.component[0].code.coding[1].display = 'OMH to FHIR Temporal Relationship To Sleep'
11.B1 body.temporal_relationship_to_sleep Observation.component[0].valueCodeableConcept A mapping between body.temporal_relationship_to_sleep and FHIR Observation Component.valueCodeableConcept data elements.
11.B2 body.temporal_relationship_to_sleep Observation.component[0].valueCodeableConcept.coding[0].code Map body.temporal_relationship_to_sleep to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table
11.B3 body.temporal_relationship_to_sleep Observation.component[0].valueCodeableConcept.coding[0].system Map body.temporal_relationship_to_sleep to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table
11.B4 body.temporal_relationship_to_sleep Observation.component[0].valueCodeableConcept.coding[0].display Map body.temporal_relationship_to_sleep to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table
11.B5 body.temporal_relationship_to_sleep Observation.component[0].valueCodeableConcept.text = body.temporal_relationship_to_sleep

Examples:

OMH body-temperature schema instance - Basal temperature

The following OMH body-temperature schema instance:

{
    "header": {
        "id": "080997cb-224e-499e-8584-90b6d50184c7",
        "creation_date_time": "2020-05-30T01:15:47.285652Z",
        "schema_id": {
            "namespace": "omh",
            "name": "body-temperature",
            "version": "3.0"
        },
        "acquisition_provenance": {
            "source_name": "Acme body-temperature device",
            "source_creation_date_time": "2020-05-30T01:15:47.285652Z",
            "source_data_point_id": "fc18d8d4-9cbf-4163-9514-2ad54fe0397b",
            "modality": "sensed"
        },
        "user_id": "e78f7659-c0d4-4308-8961-ff4180f0dff1"
    },
    "body": {
        "body_temperature": {
            "value": 96.5,
            "unit": "F"
        },
        "effective_time_frame": {
            "date_time": "2013-02-05T06:25:00Z"
        },
        "temporal_relationship_to_sleep": "on waking"
    }
}

Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)

{
    "resourceType": "Observation",
    "meta": {
        "profile": [
            "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
        ]
    },
    "identifier": [
        {
            "system": "https://omh.org/shimmer/ids",
            "value": "080997cb-224e-499e-8584-90b6d50184c7"
        }
    ],
    "status": "unknown",
    "category": [
        {
            "coding": [
                {
                    "system": "http://terminology.hl7.org/CodeSystem/observation-category",
                    "code": "vital-signs",
                    "display": "Vital Signs"
                }
            ]
        }
    ],
    "code": {
        "coding": [
            {
                "system": "http://loinc.org",
                "code": "8310-5",
                "display": "Body temperature"
            }
        ]
    },
    "subject": {
        "identifier": {
            "system": "https://omh.org/shimmer/patient_ids",
            "value": "e78f7659-c0d4-4308-8961-ff4180f0dff1"
        }
    },
    "effectiveDateTime": "2013-02-05T06:25:00Z",
    "issued": "2020-05-30T01:15:47.285652Z",
    "valueQuantity": {
        "value": 96.5,
        "unit": "F",
        "system": "http://unitsofmeasure.org",
        "code": "[degF]"
    },
    "device": {
        "extension": [
            {
                "url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
                "valueCode": "sensed"
            }
        ],
        "display": "Acme body-temperature device"
    },
    "component": [
        {
            "code": {
                "coding": [
                    {
                        "system": "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes",
                        "code": "relative-to-sleep",
                        "display": "OMH to FHIR Temporal Relationship To Sleep"
                    }
                ]
            },
            "valueCodeableConcept": {
                "coding": [
                    {
                        "system": "http://snomed.info/sct",
                        "code": "307156004",
                        "display": "On waking"
                    }
                ],
                "text": "on waking"
            }
        }
    ]
}

OMH body-temperature schema instance - Valid temperature with measuremet_location

The following OMH body-temperature schema instance:

{
    "header": {
        "id": "de15187e-cd8a-46eb-90e7-5ff1303007dc",
        "creation_date_time": "2020-05-30T01:36:06.311337Z",
        "schema_id": {
            "namespace": "omh",
            "name": "body-temperature",
            "version": "3.0"
        },
        "acquisition_provenance": {
            "source_name": "Acme body-temperature device",
            "source_creation_date_time": "2020-05-30T01:36:06.311337Z",
            "source_data_point_id": "8b6aa922-5d03-4471-8e2d-0bc13e3bff6c",
            "modality": "sensed"
        },
        "user_id": "95718638-98b4-4c3d-8040-0301d2b805f4"
    },
    "body": {
        "body_temperature": {
            "value": 97,
            "unit": "F"
        },
        "effective_time_frame": {
            "date_time": "2013-02-05T07:25:00Z"
        },
        "measurement_location": "forehead"
    }
}

Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)

{
    "resourceType": "Observation",
    "meta": {
        "profile": [
            "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
        ]
    },
    "identifier": [
        {
            "system": "https://omh.org/shimmer/ids",
            "value": "de15187e-cd8a-46eb-90e7-5ff1303007dc"
        }
    ],
    "status": "unknown",
    "category": [
        {
            "coding": [
                {
                    "system": "http://terminology.hl7.org/CodeSystem/observation-category",
                    "code": "vital-signs",
                    "display": "Vital Signs"
                }
            ]
        }
    ],
    "code": {
        "coding": [
            {
                "system": "http://loinc.org",
                "code": "8310-5",
                "display": "Body temperature"
            }
        ]
    },
    "subject": {
        "identifier": {
            "system": "https://omh.org/shimmer/patient_ids",
            "value": "95718638-98b4-4c3d-8040-0301d2b805f4"
        }
    },
    "effectiveDateTime": "2013-02-05T07:25:00Z",
    "issued": "2020-05-30T01:36:06.311337Z",
    "valueQuantity": {
        "value": 97,
        "unit": "F",
        "system": "http://unitsofmeasure.org",
        "code": "[degF]"
    },
    "bodySite": {
        "coding": [
            {
                "system": "http://www.fhir.org/guides/mfhir/CodeSystem/body-location",
                "code": "forehead"
            }
        ],
        "text": "forehead"
    },
    "device": {
        "extension": [
            {
                "url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
                "valueCode": "sensed"
            }
        ],
        "display": "Acme body-temperature device"
    }
}

OMH body-temperature schema instance - valid temperature with statistic

The following OMH body-temperature schema instance:

{
    "header": {
        "id": "e694349f-ac2c-4712-86b1-c09152c35667",
        "creation_date_time": "2020-05-30T01:43:16.250809Z",
        "schema_id": {
            "namespace": "omh",
            "name": "body-temperature",
            "version": "3.0"
        },
        "acquisition_provenance": {
            "source_name": "Acme body-temperature device",
            "source_creation_date_time": "2020-05-30T01:43:16.250809Z",
            "source_data_point_id": "3e36c93c-1e40-4f9f-8d9d-8570aec95d55",
            "modality": "sensed"
        },
        "user_id": "2c95c8db-5b06-4651-a606-b51406fcc4d4"
    },
    "body": {
        "body_temperature": {
            "value": 96.5,
            "unit": "F"
        },
        "effective_time_frame": {
            "time_interval": {
                "start_date_time": "2020-02-05T06:00:00-08:00",
                "end_date_time": "2020-02-06T06:00:00-08:00"
            }
        },
        "measurement_location": "oral",
        "descriptive_statistic": "maximum"
    }
}

Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)

{
    "resourceType": "Observation",
    "meta": {
        "profile": [
            "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
        ]
    },
    "identifier": [
        {
            "system": "https://omh.org/shimmer/ids",
            "value": "e694349f-ac2c-4712-86b1-c09152c35667"
        }
    ],
    "status": "unknown",
    "category": [
        {
            "coding": [
                {
                    "system": "http://terminology.hl7.org/CodeSystem/observation-category",
                    "code": "vital-signs",
                    "display": "Vital Signs"
                }
            ]
        }
    ],
    "code": {
        "coding": [
            {
                "system": "http://loinc.org",
                "code": "8310-5",
                "display": "Body temperature"
            },
            {
                "system": "http://hl7.org/fhir/omh_fhir_observation_codes",
                "code": "body-temperature-maximum",
                "display": "Body Temperature-Maximum"
            }
        ]
    },
    "subject": {
        "identifier": {
            "system": "https://omh.org/shimmer/patient_ids",
            "value": "2c95c8db-5b06-4651-a606-b51406fcc4d4"
        }
    },
    "effectivePeriod": {
        "start": "2020-02-05T06:00:00-08:00",
        "end": "2020-02-06T06:00:00-08:00"
    },
    "issued": "2020-05-30T01:43:16.250809Z",
    "valueQuantity": {
        "value": 96.5,
        "unit": "F",
        "system": "http://unitsofmeasure.org",
        "code": "[degF]"
    },
    "bodySite": {
        "coding": [
            {
                "system": "http://www.fhir.org/guides/mfhir/CodeSystem/intervention-administration-route",
                "code": "oral"
            }
        ],
        "text": "oral"
    },
    "device": {
        "extension": [
            {
                "url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
                "valueCode": "sensed"
            }
        ],
        "display": "Acme body-temperature device"
    }
}




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