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c302_A_IClamp.net.nml
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c302_A_IClamp.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_IClamp">
<notes>
Parameters and setting used to generate this network:
Data reader: SpreadsheetDataReader
c302 version: 0.8.0
owmeta version: 0.12.3
owmeta_core version: 0.13.5
Cells: ['ADAL', 'PVCL']
Cell stimulated: []
Connection: []
Connection numbers overridden: None
Connection numbers scaled: None
Connection polarities override: None
Muscles: ['MDR01']
Known BioParameters:
BioParameter: chem_exc_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_erev = -80mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: unphysiological_offset_current = 0pA (SRC: KnownError, certainty 0)
BioParameter: unphysiological_offset_current_del = 0ms (SRC: KnownError, certainty 0)
BioParameter: unphysiological_offset_current_dur = 200ms (SRC: KnownError, certainty 0)
</notes>
<iafCell id="generic_muscle_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<iafCell id="generic_neuron_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<pulseGenerator id="offset_current" delay="0ms" duration="200ms" amplitude="0pA"/>
<pulseGenerator id="stim_ADAL_1" delay="100ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_PVCL_1" delay="100ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_MDR01_1" delay="100ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_ADAL_2" delay="1100ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_PVCL_2" delay="1100ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_MDR01_2" delay="1100ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_ADAL_3" delay="2100ms" duration="800ms" amplitude="3pA"/>
<pulseGenerator id="stim_PVCL_3" delay="2100ms" duration="800ms" amplitude="3pA"/>
<pulseGenerator id="stim_MDR01_3" delay="2100ms" duration="800ms" amplitude="3pA"/>
<pulseGenerator id="stim_ADAL_4" delay="3100ms" duration="800ms" amplitude="4pA"/>
<pulseGenerator id="stim_PVCL_4" delay="3100ms" duration="800ms" amplitude="4pA"/>
<pulseGenerator id="stim_MDR01_4" delay="3100ms" duration="800ms" amplitude="4pA"/>
<pulseGenerator id="stim_ADAL_5" delay="4100ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_PVCL_5" delay="4100ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_MDR01_5" delay="4100ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_ADAL_6" delay="5100ms" duration="800ms" amplitude="6pA"/>
<pulseGenerator id="stim_PVCL_6" delay="5100ms" duration="800ms" amplitude="6pA"/>
<pulseGenerator id="stim_MDR01_6" delay="5100ms" duration="800ms" amplitude="6pA"/>
<network id="c302_A_IClamp">
<property tag="recommended_duration_ms" value="6000"/>
<property tag="recommended_dt_ms" value="0.05"/>
<population id="ADAL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value=""/>
<property tag="neurotransmitter" value="Glutamate"/>
<property tag="OpenWormBackerAssignedName" value="Xabe"/>
<instance id="0">
<location x="8.65" y="-239.25" z="31.050000000000001"/>
</instance>
</population>
<population id="PVCL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="PDFR-1; SER-2"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<property tag="OpenWormBackerAssignedName" value="Ramana Kumar"/>
<instance id="0">
<location x="0.85" y="404.150019999999984" z="5.5"/>
</instance>
</population>
<population id="MDR01" component="generic_muscle_iaf_cell" size="1" type="populationList">
<property tag="color" value="0 .6 0"/>
<instance id="0">
<location x="-80.0" y="-270.0" z="80.0"/>
</instance>
</population>
<inputList id="Input_ADAL_stim_ADAL_1" population="ADAL" component="stim_ADAL_1">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_1" population="PVCL" component="stim_PVCL_1">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_1" population="MDR01" component="stim_MDR01_1">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_ADAL_stim_ADAL_2" population="ADAL" component="stim_ADAL_2">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_2" population="PVCL" component="stim_PVCL_2">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_2" population="MDR01" component="stim_MDR01_2">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_ADAL_stim_ADAL_3" population="ADAL" component="stim_ADAL_3">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_3" population="PVCL" component="stim_PVCL_3">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_3" population="MDR01" component="stim_MDR01_3">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_ADAL_stim_ADAL_4" population="ADAL" component="stim_ADAL_4">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_4" population="PVCL" component="stim_PVCL_4">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_4" population="MDR01" component="stim_MDR01_4">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_ADAL_stim_ADAL_5" population="ADAL" component="stim_ADAL_5">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_5" population="PVCL" component="stim_PVCL_5">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_5" population="MDR01" component="stim_MDR01_5">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_ADAL_stim_ADAL_6" population="ADAL" component="stim_ADAL_6">
<input id="0" target="../ADAL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_PVCL_stim_PVCL_6" population="PVCL" component="stim_PVCL_6">
<input id="0" target="../PVCL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_MDR01_stim_MDR01_6" population="MDR01" component="stim_MDR01_6">
<input id="0" target="../MDR01/0/generic_muscle_iaf_cell" destination="synapses"/>
</inputList>
</network>
</neuroml>