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deps update and energy file bugfix. #35

deps update and energy file bugfix.

deps update and energy file bugfix. #35

name: Build jobs
run-name:
on:
push:
paths:
- 'src/**'
- 'lib/**'
- '3rd_party/**'
pull_request:
branches:
- master
release:
types: [published]
jobs:
build-develop-linux:
strategy:
fail-fast: false
matrix:
os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04]
compiler: [gcc-9, gcc-10, gcc-11, gcc-12, gcc-13, gcc-14, clang-11, clang-12, clang-13, clang-15, clang-16, clang-17]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
with:
submodules: true
- name: Setup C++
uses: aminya/setup-cpp@v0.37.0
with:
compiler: ${{ matrix.compiler }}
cmake: true
make: true
- name: "Install dependencies"
run: |
sudo apt update && sudo apt install -y \
cmake build-essential libboost-test-dev libtbb-dev \
libarchive-dev libboost-program-options-dev libboost-filesystem-dev \
libboost-system-dev libeigen3-dev liblzma-dev libbz2-dev zlib1g-dev zip
- name: "Compile supercell."
run: cmake . -DCMAKE_BUILD_TYPE=Release && make supercell -j 4
- name: "Check supercell"
run: 'src/sc_cli/supercell -d -i ./data/examples/Ca2Al2SiO7/Ca2Al2SiO7.cif | grep -q "The total number of combinations is 6"'
deploy-build-macos:
strategy:
fail-fast: false
runs-on: macos-13
steps:
- name: Set up Homebrew
id: set-up-homebrew
uses: Homebrew/actions/setup-homebrew@master
- name: "Install brew dependencies"
run: |
brew install boost eigen libarchive zlib
- name: "Get TBB"
uses: actions/checkout@v3
with:
repository: oneapi-src/oneTBB
ref: v2021.13.0
path: ./tbb
submodules: true
- name: "Compile and install tbb"
working-directory: ./tbb
run: |
cmake . -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=OFF -DTBB_TEST=OFF
make -j 4
sudo make install
- uses: actions/checkout@v3
with:
path: ./supercell
submodules: true
- name: "Compile supercell."
working-directory: ./supercell
run: |
export PKG_CONFIG_PATH="/usr/local/opt/libarchive/lib/pkgconfig"
cmake . -DCMAKE_BUILD_TYPE=Release -DLINK_STATIC_LIBS=ON -DLibArchive_INCLUDE_DIR=/usr/local/opt/libarchive/include && make supercell -j 4
- name: "Check supercell"
working-directory: ./supercell
run: 'src/sc_cli/supercell -d -i ./data/examples/Ca2Al2SiO7/Ca2Al2SiO7.cif | grep -q "The total number of combinations is 6"'
- name: "Check supercell dynamic libs."
working-directory: ./supercell
run: 'otool -l src/sc_cli/supercell'
- name: Upload Supercell
uses: actions/upload-artifact@v3.1.1
with:
name: macos-bin
path: ./supercell/src/sc_cli/supercell
deploy-build-linux:
strategy:
fail-fast: false
runs-on: ubuntu-latest
container: ubuntu:18.04
steps:
- name: "Install dependencies"
run: |
apt-get update && apt-get full-upgrade -y
apt-get install -y software-properties-common wget tar cmake build-essential \
ccache libboost-program-options-dev libboost-filesystem-dev libboost-test-dev \
libarchive-dev liblzma-dev libbz2-dev zlib1g-dev zip libboost-system-dev
add-apt-repository ppa:git-core/ppa
add-apt-repository ppa:ubuntu-toolchain-r/test
apt-get update
apt-get install -y git gcc-9 g++-9
- name: "Compile and install dependencies"
run: |
export CC=gcc-9
export CXX=g++-9
export PATH="/usr/lib/ccache:$PATH"
export BASE_DIR=${PWD}
mkdir eigen && cd eigen
wget -nv https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.tar.gz -O - | tar -zxf -
mkdir build && cd build
cmake ../eigen-3.4.0
make install
cd $BASE_DIR
git clone https://github.com/oneapi-src/oneTBB.git
cd oneTBB && git checkout v2021.13.0
mkdir cmake-build && cd cmake-build
cmake ../ -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=OFF -DTBB_TEST=OFF
make -j 4 && make install
cd $BASE_DIR
wget -nv https://github.com/libarchive/libarchive/releases/download/v3.7.4/libarchive-3.7.4.tar.gz -O - | tar -zxf -
cd libarchive-3.7.4
./configure --without-openssl --without-libb2 --without-xml2 --without-expat --disable-bsdtar
sed -ir '/^.*#define HAVE_LZMA_STREAM_ENCODER_MT 1.*$/d' config.h
make -j 4
make install
cd $BASE_DIR
- name: "Clone supercell"
uses: actions/checkout@v3
with:
path: ./supercell
submodules: true
- name: "Compile and install supercell"
run: |
export CC=gcc-9
export CXX=g++-9
export PATH="/usr/lib/ccache:$PATH"
cd supercell
cmake . -DCMAKE_BUILD_TYPE=Release -DLINK_STATIC_LIBS=ON && make supercell -j 2
ccache -s
- name: "Test supercell"
run: |
supercell/src/sc_cli/supercell -d -i supercell/data/examples/Ca2Al2SiO7/Ca2Al2SiO7.cif | grep -q "The total number of combinations is 6"
- name: Upload Supercell
uses: actions/upload-artifact@v3.1.1
with:
name: linux-bin
path: ./supercell/src/sc_cli/supercell
deploy-build-windows:
runs-on: ubuntu-20.04
steps:
- name: "Install dependencies"
run: |
sudo apt update && sudo apt -y full-upgrade
sudo apt install -y gcc cmake build-essential wine-stable autopoint gperf intltool libtool libtool-bin lzip p7zip-full python3 python3-mako
- name: "Download MXE"
uses: actions/checkout@v3
with:
repository: mxe/mxe
path: ./mxe
submodules: true
- name: Cache
uses: pat-s/always-upload-cache@v3.0.11
with:
path: ./mxe/.ccache
key: win-cache-${{ github.run_id }} # Can use time based key as well
restore-keys: |
win-cache-
- name: "Compile MXE"
working-directory: ./mxe
run: |
sed -i -r 's/ nettle / /g' src/libarchive.mk && sed -i -r 's/with-nettle/without-nettle --without-openssl --without-iconv /g' src/libarchive.mk
make MXE_TARGETS=x86_64-w64-mingw32.static MXE_PLUGIN_DIRS=plugins/gcc13 ccache
echo 'max_size = 15.0G' > .ccache/ccache/ccache.conf
.ccache/bin/ccache -s
make MXE_TARGETS=x86_64-w64-mingw32.static MXE_PLUGIN_DIRS=plugins/gcc13 ccache cc cmake intel-tbb boost eigen libarchive --jobs=4 JOBS=4
.ccache/bin/ccache -s
echo "${PWD}/usr/bin" >> $GITHUB_PATH
- name: "Clone supercell"
uses: actions/checkout@v3
with:
path: ./supercell
submodules: true
- name: "Compile Supercell"
working-directory: ./supercell
run: |
x86_64-w64-mingw32.static-cmake . -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_DOC=OFF -DLINK_STATIC_LIBS=ON
make supercell
- name: "Run supercell"
working-directory: ./supercell
run: 'wine64 src/sc_cli/supercell.exe -d -i ./data/examples/Ca2Al2SiO7/Ca2Al2SiO7.cif | grep -q "The total number of combinations is 6"'
- name: Upload Supercell
uses: actions/upload-artifact@v3.1.1
with:
name: windows-bin
path: ./supercell/src/sc_cli/supercell.exe
deploy-to-site:
if: github.event_name == 'release'
needs: [deploy-build-linux, deploy-build-macos, deploy-build-windows]
runs-on: ubuntu-latest
steps:
- name: "Install dependencies"
run: |
sudo apt-get update && sudo apt-get full-upgrade -y
sudo apt-get update
sudo apt-get install -y git wget tar openssh-client zip
- uses: actions/download-artifact@v3
with:
name: linux-bin
path: ./art/linux
- uses: actions/download-artifact@v3
with:
name: windows-bin
path: ./art/windows
- uses: actions/download-artifact@v3
with:
name: macos-bin
path: ./art/osx
- name: "Deploy to file"
env:
SITE_REPO_KEY: ${{ secrets.DEPLOY_KEY }}
run: |
mkdir ./site && cd ./site
# Save some useful information
ART_DIR=${PWD}/../art/
DEPLOY_REPO="git@github.com:orex/orex.github.io.git"
DEPLOY_BRANCH="master"
DEPLOY_DIR="supercell/external"
#
mkdir ~/.ssh
eval `ssh-agent -s`
echo "${SITE_REPO_KEY}" | ssh-add -
ssh-keyscan -t rsa github.com > ~/.ssh/known_hosts
# Clone the existing gh-pages for this repo into out/
# Create a new empty branch if gh-pages doesn't exist yet (should only happen on first deply)
git clone --recurse-submodules "${DEPLOY_REPO}" --branch "${DEPLOY_BRANCH}" out && cd out
REPO_PATH=${PWD}
# Now let's go have some fun with the cloned repo
git config user.name "Github Action"
git config user.email "kirill.okhotnikov@gmail.com"
#Main code
mkdir -p "${REPO_PATH}/${DEPLOY_DIR}/exe/."
cd `mktemp -d -t XXXXXX`
wget -nv https://github.com/orex/supercell/raw/deploy/README -O README
for i in ${ART_DIR}/*
do
cp -a "${i}"/* .
OS=`basename "${i}"`
if [[ "$OS" == "windows" ]]; then
zip -9 supercell-$OS.zip README supercell.exe
else
chmod +x supercell
tar czvf supercell-$OS.tar.gz README supercell
fi
rm -f supercell supercell.exe
done
cp -afv supercell-* "${REPO_PATH}/${DEPLOY_DIR}/exe/."
cd ${REPO_PATH}
ls -lah
# Commit the "changes", i.e. the new version.
# The delta will show diffs between new and old version
git add --no-ignore-removal .
git status
git commit -m "Deploy to GitHub Pages: ${GITHUB_SHA}"
# Now that we're all set up, we can push.
git push $DEPLOY_REPO $DEPLOY_BRANCH