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    • JavaScript
      0000Updated Jan 5, 2024Jan 5, 2024
    • WebGL-based viewer for volumetric data
      TypeScript
      Apache License 2.0
      299000Updated Dec 1, 2023Dec 1, 2023
    • navis

      Public
      Python library for analysis of neuroanatomical data.
      Python
      GNU General Public License v3.0
      33000Updated Oct 16, 2023Oct 16, 2023
    • Discussion about regions, cell types, papers etc.
      0000Updated May 31, 2023May 31, 2023
    • workspace

      Public
      Jupyter Notebook
      0000Updated May 23, 2023May 23, 2023
    • 3D U-Net model for volumetric semantic segmentation written in pytorch
      Jupyter Notebook
      MIT License
      514000Updated May 11, 2023May 11, 2023
    • napari

      Public
      napari: a fast, interactive, multi-dimensional image viewer for python
      Python
      BSD 3-Clause "New" or "Revised" License
      425000Updated May 11, 2023May 11, 2023
    • Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics
      JavaScript
      2000Updated Jun 8, 2022Jun 8, 2022
    • JSON Schemas for neuroglancer data structures
      Python
      1000Updated Feb 16, 2022Feb 16, 2022
    • React component wrapper for neuroglancer
      JavaScript
      4000Updated Jun 18, 2021Jun 18, 2021
    • Python
      12000Updated Mar 12, 2021Mar 12, 2021
    • Code and data for the 2021 Open for Science tutorial for EM connectomics.
      Jupyter Notebook
      Other
      4000Updated Mar 10, 2021Mar 10, 2021
    • Django application serving data for synapse-guided circuit mapping in CATMAID
      Python
      2310Updated Apr 9, 2020Apr 9, 2020
    • CATMAID

      Public
      Collaborative Annotation Toolkit for Massive Amounts of Image Data
      JavaScript
      GNU General Public License v3.0
      57000Updated Oct 29, 2019Oct 29, 2019
    • pymaid

      Public
      Collection of Python 3 tools to work with neuron data from CATMAID servers
      Python
      GNU General Public License v3.0
      11000Updated Oct 9, 2019Oct 9, 2019
    • Tools to work with manual and auto-segmented data in FAFB
      Python
      GNU General Public License v3.0
      5000Updated Oct 7, 2019Oct 7, 2019
    • Flask application to serve data via CloudVolume
      Python
      BSD 2-Clause "Simplified" License
      3000Updated Oct 2, 2019Oct 2, 2019
    • catpy

      Public
      Python client for the CATMAID API
      Python
      MIT License
      3000Updated Sep 23, 2019Sep 23, 2019
    • arbor

      Public
      A python implementation of (some of) Arbor.js and related tools
      Python
      MIT License
      1000Updated Dec 2, 2018Dec 2, 2018
    • catalysis

      Public
      Python tools for interacting with CATMAID
      Python
      3000Updated Oct 18, 2018Oct 18, 2018