{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"3D-Vac","owner":"DeepRank","isFork":false,"description":"Personalized cancer vaccine design through 3D modelling boosted geometric learning.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":6,"starsCount":3,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T16:30:55.405Z"}},{"type":"Public","name":"deeprank2","owner":"DeepRank","isFork":false,"description":"An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants. ","allTopics":["deep-learning","structural-biology","pytorch","convolutional-neural-networks","graph-neural-networks","protein-protein-interfaces","single-residue-variants"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":24,"starsCount":33,"forksCount":10,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-17T07:42:11.399Z"}},{"type":"Public","name":"h5xplorer","owner":"DeepRank","isFork":false,"description":"A customizable HDF5 browser with iPython console embbeded","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":5,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T22:11:05.458Z"}},{"type":"Public","name":"DeepRank-GNN-esm","owner":"DeepRank","isFork":false,"description":"Graph Network for protein-protein interface including language model features","allTopics":["deep-learning","scoring","language-model","protein-protein-interaction","utrecht-university","graph-networks","interface-classification"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":25,"forksCount":8,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-26T12:48:04.084Z"}},{"type":"Public archive","name":"Deeprank-GNN","owner":"DeepRank","isFork":false,"description":"Graph Network for protein-protein interface","allTopics":["graph","scoring","protein","pssm","utrecht-university","graph-networks","protein-protein-interactions","interface-classification"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":117,"forksCount":31,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-22T11:37:01.776Z"}},{"type":"Public","name":"staged-recipes","owner":"DeepRank","isFork":true,"description":"A place to submit conda recipes before they become fully fledged conda-forge feedstocks","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4873,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[247,309,436,398,379,283,329,378,275,294,498,334,223,166,420,308,289,166,361,511,402,361,60,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-06T13:56:37.130Z"}},{"type":"Public","name":"pdbprep","owner":"DeepRank","isFork":false,"description":"preprocess PDB files for deeprankcore","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":4,"starsCount":4,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T16:26:50.598Z"}},{"type":"Public archive","name":"DeepRank-Mut","owner":"DeepRank","isFork":false,"description":"Deep learning framework to predict functional effects of missense variants in human ","allTopics":["protein-structure","missense-mutations","3dcnn","variant-effect-prediction"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":4,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-26T12:29:22.248Z"}},{"type":"Public archive","name":"deeprank","owner":"DeepRank","isFork":false,"description":"This repository has been integrated in https://github.com/DeepRank/deeprank2","allTopics":["pytorch","docking","protein-protein-interaction","3d-cnn"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":74,"starsCount":145,"forksCount":27,"license":"Apache License 2.0","participation":[0,0,0,0,0,1,0,0,1,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-28T19:28:50.580Z"}},{"type":"Public","name":"pdb2sql","owner":"DeepRank","isFork":false,"description":"Fast and versatile biomolecular structure PDB file parser using SQL queries","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":24,"forksCount":12,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-17T08:11:23.858Z"}},{"type":"Public","name":"pdb2sql_benchmark","owner":"DeepRank","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-03T10:11:12.207Z"}},{"type":"Public","name":"haddock-tools","owner":"DeepRank","isFork":true,"description":"Set of useful HADDOCK utility scripts","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":17,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-14T17:00:55.621Z"}},{"type":"Public","name":"PSSMGen","owner":"DeepRank","isFork":false,"description":"Generates consistent PSSM and/or PDB files for protein-protein complexes","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":17,"forksCount":5,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-26T14:17:28.616Z"}},{"type":"Public","name":"iScore","owner":"DeepRank","isFork":false,"description":"iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":11,"starsCount":25,"forksCount":11,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-25T09:12:45.871Z"}},{"type":"Public","name":"scrapePDB","owner":"DeepRank","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-13T15:27:37.304Z"}},{"type":"Public","name":"PoNDeR","owner":"DeepRank","isFork":false,"description":"PointNet for Deep Rank: protein-protein interaction scoring using neural networks","allTopics":["deep-learning","pdb","point-cloud","protein-protein-interaction","structural-bioinformatics","pointnet"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":9,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-27T10:59:31.174Z"}},{"type":"Public","name":"DeepXplorer","owner":"DeepRank","isFork":false,"description":"Data browser for HDF5 files generated by DeepRank ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-25T15:49:46.474Z"}},{"type":"Public","name":"pypdb","owner":"DeepRank","isFork":true,"description":"A Python API for the RCSB Protein Data Bank (PDB)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":77,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-08-06T16:45:30.635Z"}},{"type":"Public","name":"graphRank","owner":"DeepRank","isFork":false,"description":"graph approach of ranking","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-01T20:41:47.755Z"}}],"repositoryCount":19,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"DeepRank repositories"}