Repositories list

• Dockers

  Public
  A repository of recipes for Docker containers built for the NCI-RBL

  dockercontainers

  C

  •2•2•1•0•Updated Oct 22, 2024Oct 22, 2024

• .github

  Public
  Public GitHub Profile

  MIT License

  •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

• iCLIP_V3

  Public
  Stable release for iCLIP V3

  Nextflow

  •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• RBL-14

  Public
  Characterize miRNA-bound chimera reads in AGO2 CLASH

  0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

• iCLIP

  Public
  RNA Biology Pipeline to Characterize protein-RNA Interactions

  HTML

  •

  MIT License

  •2•4•5•0•Updated May 25, 2023May 25, 2023

• RNA-seek

  Public
  A comprehensive quality-control and quantification RNA-seq pipeline

  Python

  •

  MIT License

  •12•0•0•0•Updated May 2, 2023May 2, 2023

• MOP2-Pipeline

  Public
  A pipeline for the RBL to run Master Of Pores 2 on the FRCE cluster

  0•0•0•0•Updated Nov 8, 2022Nov 8, 2022

• Wu_tRNA_seq

  Public
  Analysis of tRNAseq data from the Colin Wu lab using mimseq (mim-tRNASeq) toolkit.

  0•0•0•0•Updated Jul 29, 2022Jul 29, 2022

• 4SUseq

  Public
  Analysis of 4SU labeled (and unlabeled) total RNA samples.

  rnaseqvariant-calling4suseq+ 2pipelineanalysis

  Python

  •1•1•0•0•Updated Oct 20, 2021Oct 20, 2021

• RBL_RBL3

  Public
  CCBR related projects

  Python

  •0•1•0•0•Updated Jul 30, 2021Jul 30, 2021

• CLIP_Analysis_Soyeong

  Public
  HTML

  •0•0•2•0•Updated Feb 1, 2021Feb 1, 2021

• ONT_RNAseq

  Public
  ONT RNAseq analysis (cDNA)

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 23, 2020Nov 23, 2020

• RNAediting_pipeline

  Public
  HTML

  •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

• 3-_End_Identification

  Public
  0•0•0•0•Updated Sep 30, 2020Sep 30, 2020