Repositories list

• ProteoformNetworks

  Public
  Tests to prove usefulness of proteoform networks

  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•1•3•Updated Oct 18, 2023Oct 18, 2023

• Networks

  Public
  Protein and proteoform interaction networks created from Pathways in Reactome.

  0•0•0•0•Updated May 18, 2023May 18, 2023

• PathwayStructure

  Public
  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Apr 19, 2023Apr 19, 2023

• PathwayMatcher

  Public
  PathwayMatcher is a free, open-source software to search for pathways related to a list of genes, proteins or proteoforms in Reactome.

  Java

  •

  Other

  •2•2•0•3•Updated Jun 4, 2021Jun 4, 2021

• PathwayMatcher_Publication

  Public
  Source code, data files and figures for the PathwayMatcher manuscript.

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 27, 2020Mar 27, 2020

• ProteoformNetworks_resources

  Public
  Data files and result tables for the project ProteoformNetworks, which compares the overlap between trait modules at gene and proteoform level.

  0•0•0•0•Updated Oct 2, 2019Oct 2, 2019

• MappingFiles

  Public
  Tables create with Variant Effect Predictor (VEP) to map from genetic variants to gene names and Swiss Prot accessions.

  Apache License 2.0

  •0•0•0•0•Updated Apr 4, 2019Apr 4, 2019

• PathwayMatcher_Dev

  Public archive
  PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher

  developmentpathway-analysisproteoforms+ 3pathwaysreactomebiological-networks

  Java

  •

  Apache License 2.0

  •1•6•0•0•Updated Mar 4, 2019Mar 4, 2019

• Methods

  Public archive
  Java implementation of Methods to search and analyse pathways

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2019Feb 28, 2019

• Model

  Public archive
  Set of classes to represent the objects related to pathway analysis

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2019Feb 28, 2019

• Extractor

  Public archive
  Tool for creating static mapping files from multiples data types to the reactions and pathways in the Reactome graph database.

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 27, 2019Feb 27, 2019

• CodeStyle

  Public
  Guidelines for coding style across our projects.

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

• AnalysisGuidelines

  Public
  Creative Commons Attribution Share Alike 4.0 International

  •0•0•0•0•Updated Sep 16, 2018Sep 16, 2018

• PathFinder

  Public
  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 10, 2018Sep 10, 2018