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10 repositories

proteinmpnn_ddg
Public
Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
Python
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MIT License
•4•35•0•0•Updated Dec 10, 2024Dec 10, 2024
ADOPT
Public
ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers
Jupyter Notebook
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MIT License
•1•16•12•0•Updated Dec 3, 2024Dec 3, 2024
contrastive-finetuning-plms
Public
Optimizing protein language models with Sentence Transformers - ADOPT2
Python
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Apache License 2.0
•1•3•0•0•Updated Dec 3, 2024Dec 3, 2024
ColabDesign
Public
Making Protein Design accessible to all via Google Colab!
Python
•152•0•0•0•Updated Jun 19, 2024Jun 19, 2024
nerfax
Public
An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
proteins dynamics simulations molecular numerical jax
Jupyter Notebook
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Apache License 2.0
•4•15•0•0•Updated Jun 12, 2024Jun 12, 2024
pepkalc
Public
Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.
bioinformatics polymer simulation prediction protein biophysics protein-sequence electrostatics protonation
Python
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Other
•1•5•0•0•Updated Aug 23, 2022Aug 23, 2022
ProteoNeMo
Public
Ongoing research training transformer models on proteome at scale
Python
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Apache License 2.0
•1•5•3•0•Updated Aug 11, 2022Aug 11, 2022
dspp-keras
Public
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
machine-learning ai tensorflow keras prediction biotechnology database polymer biology protein-structure
Python
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GNU Affero General Public License v3.0
•21•169•1•0•Updated Jun 15, 2022Jun 15, 2022
Machine-learning-for-proteins
Public
Listing of papers about machine learning for proteins.
GNU General Public License v3.0
•204•8•0•0•Updated Mar 15, 2021Mar 15, 2021
dspp-data
Public
Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.
machine-learning tensorflow protein-structure keras prediction dataset protein protein-sequences keras-models tensorflow-models
2•4•1•0•Updated Jun 4, 2017Jun 4, 2017