Repositories list

• schematic

  Public
  Package for biomedical data model and metadata ingress management

  schemabiomedical-informaticsdata-ingress

  Python

  •

  MIT License

  •26•22•0•4•Updated Dec 13, 2024Dec 13, 2024

• snowflake

  Public
  Snowflake Administration, Transformations, and Analytics

  snowflake

  Python

  •

  Apache License 2.0

  •4•5•0•3•Updated Dec 13, 2024Dec 13, 2024

• sage-monorepo

  Public
  Where OpenChallenges, Schematic, and other Sage open source apps are built

  angularopenapischematic+ 11monorepofull-stackfairdeveloper-experiencenxagoraspecification-first+ 4

  TypeScript

  •

  Apache License 2.0

  •12•23•152•3•Updated Dec 13, 2024Dec 13, 2024

• BridgeServer2

  Public
  Bridge Server 2.0 running on Spring Boot

  Java

  •

  Other

  •22•5•0•1•Updated Dec 13, 2024Dec 13, 2024

• agora-data-manager

  Public
  Tool to manage agora data

  Shell

  •

  Apache License 2.0

  •9•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• synapse-web-monorepo

  Public
  Monorepo for Synapse Web projects

  TypeScript

  •23•5•3•27•Updated Dec 12, 2024Dec 12, 2024

• agora-data-tools

  Public
  A place for Agora's ETL and Data Testing

  Jupyter Notebook

  •

  Apache License 2.0

  •3•1•0•0•Updated Dec 12, 2024Dec 12, 2024

• Genie

  Public
  Validation and processing of GENIE files

  pythonetlgenie+ 2dpecomponc

  Python

  •

  MIT License

  •9•12•1•3•Updated Dec 12, 2024Dec 12, 2024

• genie-bpc-pipeline

  Public
  GENIE BPC pipeline scripts

  genie

  R

  •

  MIT License

  •1•2•0•5•Updated Dec 12, 2024Dec 12, 2024

• recover

  Public
  A data pipeline for processing data from the RECOVER project.

  Python

  •

  Apache License 2.0

  •1•5•0•1•Updated Dec 12, 2024Dec 12, 2024

• Synapse-Repository-Services

  Public
  The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

  Java

  •

  Apache License 2.0

  •53•36•0•7•Updated Dec 11, 2024Dec 11, 2024

• aws-htan-infra

  Public
  AWS CloudFormation templates for deploying HTAN infrastructure

  Apache License 2.0

  •4•1•1•0•Updated Dec 10, 2024Dec 10, 2024

• SynapseWebClient

  Public
  The web client of the Synapse REST service core

  JavaScript

  •

  Apache License 2.0

  •37•23•1•7•Updated Dec 10, 2024Dec 10, 2024

• shiny-base

  Public
  Base Docker image for Shiny applications

  Dockerfile

  •1•0•0•1•Updated Dec 9, 2024Dec 9, 2024

• Synapse-Stack-Builder

  Public
  Project for building a complete Synapse Stack

  Java

  •

  Apache License 2.0

  •19•5•0•2•Updated Dec 7, 2024Dec 7, 2024

• synapsePythonClient

  Public
  Programmatic interface to Synapse services for Python

  synapsepython

  Python

  •

  Apache License 2.0

  •68•67•3•3•Updated Dec 6, 2024Dec 6, 2024

• core-models

  Public
  Sage repository for data models and core models work

  Python

  •1•0•3•0•Updated Dec 6, 2024Dec 6, 2024

• GENIE-Sponsored-Projects

  Public
  This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files

  genie

  Python

  •

  MIT License

  •1•5•5•2•Updated Dec 5, 2024Dec 5, 2024

• nbconvert-webapp

  Public
  Converts ipynb file into html. Packaged for Lambda deployment

  Python

  •2•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• Synapse-ETL-Jobs

  Public
  Synapse ETL jobs project will be maintaining all the ETL jobs for Synapse

  Python

  •5•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• Exceptional-Longevity

  Public
  Repository to store scripts for data curation and backend portal drivers for the ELITE Portal.

  R

  •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• data_curator_config

  Public
  Project configurations for the Data Curator App

  20•2•0•0•Updated Dec 4, 2024Dec 4, 2024

• genie-bpc-quac-wrapper

  Public
  Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications

  genie

  R

  •

  MIT License

  •1•0•0•1•Updated Dec 4, 2024Dec 4, 2024

• knit2synapse

  Public
  Functionality to knit RMarkdown documents to Synapse wiki pages.

  R

  •

  Apache License 2.0

  •7•4•2•0•Updated Dec 4, 2024Dec 4, 2024

• cleanAD

  Public
  Tools for cleaning and organizing study data for the AD Knowledge Portal.

  R

  •

  Other

  •1•0•11•0•Updated Dec 4, 2024Dec 4, 2024

• synapse-docker-registry

  Public
  ECS deployment for the Synapse Docker registry

  Python

  •2•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• Synapse-Stack-Review-Agenda

  Public
  This is the agenda for the weekly Synapse stack release meeting

  HTML

  •6•0•0•2•Updated Dec 2, 2024Dec 2, 2024

• Agora

  Public
  TypeScript

  •

  MIT License

  •13•7•0•14•Updated Nov 28, 2024Nov 28, 2024

• genie-bpc-bladder-landscape-manu

  Public
  Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.

  R

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• genie-bpc-drug-off-label

  Public
  Repository for the code relating to off-label and off-guideline use of drugs in the BPC data.

  R

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024