{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"open-virome","owner":"serratus-bio","isFork":false,"description":"monorepo for data explorer UI and APIs","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":23,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-20T20:56:07.469Z"}},{"type":"Public","name":"logan-backend","owner":"serratus-bio","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T23:19:08.142Z"}},{"type":"Public","name":"pangenome","owner":"serratus-bio","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T16:36:11.146Z"}},{"type":"Public","name":"serratus.io","owner":"serratus-bio","isFork":false,"description":"Front-end code for Serratus project website","allTopics":["reactjs","d3js","tailwindcss","aws-amplify"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":7,"issueCount":30,"starsCount":11,"forksCount":11,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T19:01:37.193Z"}},{"type":"Public","name":"biosample-sql","owner":"serratus-bio","isFork":false,"description":"making some sense out of biosample_set.xml.gz","allTopics":["aws-lambda","aurora-serverless"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T14:54:06.038Z"}},{"type":"Public","name":"serratus-geo-utils","owner":"serratus-bio","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-13T20:23:13.425Z"}},{"type":"Public","name":"serratus-utils","owner":"serratus-bio","isFork":false,"description":"Small scripts that perform useful functions related to the serratus platform.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-07T19:25:42.810Z"}},{"type":"Public","name":"serratus-summary-api","owner":"serratus-bio","isFork":false,"description":"serving Serratus summary data via a public API","allTopics":["aws-elastic-beanstalk","flask-sqlalchemy","aurora-serverless"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":5,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-23T17:09:59.649Z"}},{"type":"Public","name":"bs2csv","owner":"serratus-bio","isFork":false,"description":"Python script to extract Biosample metadata to a csv file","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-15T18:31:52.029Z"}},{"type":"Public","name":"serratus-summary-uploader","owner":"serratus-bio","isFork":false,"description":"parse and upload Serratus summary files to various AWS offerings via AWS Lambda","allTopics":["aws-lambda","aws-athena","aws-aurora","concurrency"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-10T20:25:43.575Z"}},{"type":"Public","name":"serratus-summary-utils","owner":"serratus-bio","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-09T16:46:46.059Z"}},{"type":"Public","name":"palmid-lambda","owner":"serratus-bio","isFork":true,"description":"AWS Lambda service for `palmid` R-package/container","allTopics":["aws","lambda","virus"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-05T14:37:34.732Z"}},{"type":"Public","name":"serratus-summary-api-debug","owner":"serratus-bio","isFork":true,"description":"serving Serratus summary data via a public API","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-29T20:02:06.774Z"}},{"type":"Public","name":"tantalus","owner":"serratus-bio","isFork":false,"description":"R Data Exploration for Serratus","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":14,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-29T16:59:56.827Z"}},{"type":"Public","name":"palmdb","owner":"serratus-bio","isFork":true,"description":"Database of virus RdRP barcode sequences","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-30T15:38:38.074Z"}},{"type":"Public","name":"serratus","owner":"serratus-bio","isFork":true,"description":"Archival Fork of the main Serratus repository.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":33,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-14T07:21:57.523Z"}},{"type":"Public","name":"palmscan","owner":"serratus-bio","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-11T01:51:47.442Z"}},{"type":"Public","name":"sraruninfo-sql","owner":"serratus-bio","isFork":false,"description":"making Serratus SRA run metadata query-able","allTopics":["aws-lambda","aurora-serverless"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-02-26T04:12:25.257Z"}},{"type":"Public archive","name":"serratus-summary-api-athena","owner":"serratus-bio","isFork":false,"description":"POC for serving Serratus summary data via AWS Athena","allTopics":["expressjs","aws-codepipeline","aws-elastic-beanstalk","aws-athena"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-02-13T20:00:54.686Z"}},{"type":"Public","name":"serratus-db","owner":"serratus-bio","isFork":false,"description":"code for Serratus database curation and API routes","allTopics":["ef-core","aws-rds-postgres"],"primaryLanguage":{"name":"C#","color":"#178600"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-18T23:06:55.886Z"}},{"type":"Public","name":"diamond","owner":"serratus-bio","isFork":true,"description":"Accelerated BLAST compatible local sequence aligner.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":183,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-08-23T07:16:15.619Z"}},{"type":"Public","name":"nidhoggr","owner":"serratus-bio","isFork":true,"description":"Archival fork","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-08-02T00:26:03.587Z"}},{"type":"Public","name":"serratus-batch-assembly","owner":"serratus-bio","isFork":false,"description":"Archive-Only. See: https://gitlab.pasteur.fr/rchikhi_pasteur/serratus-batch-assembly","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT No Attribution","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-27T19:47:41.801Z"}},{"type":"Public","name":"darth","owner":"serratus-bio","isFork":false,"description":"Archival fork","allTopics":[],"primaryLanguage":{"name":"Pep8","color":"#C76F5B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-27T19:45:51.840Z"}},{"type":"Public archive","name":"serratus-api","owner":"serratus-bio","isFork":false,"description":"[deprecated] See serratus-summary-api repo for latest implementation.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-10T20:06:36.606Z"}},{"type":"Public","name":"samtools","owner":"serratus-bio","isFork":true,"description":"Tools (written in C using htslib) for manipulating next-generation sequencing data","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":577,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-24T14:05:56.908Z"}},{"type":"Public","name":"seqkit","owner":"serratus-bio","isFork":true,"description":"A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":157,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-16T13:34:32.948Z"}}],"repositoryCount":27,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"serratus-bio repositories"}