This repository contains Google Colab notebooks that reproduce the figures and results from the paper:

Jase Gehring, Jong Hwee Park, Sisi Chen, Matthew Thomson and Lior Pachter, Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins, Nature Biotechnology (2019) doi:10.1038/s41587-019-0372-z

Notebooks

• Figures and results associated with the 96 sample multiplex experiment
• Figures and results associated with the four sample multiplex experiment
• Figures and results associated with the limits of multiplexing experiment