-
Notifications
You must be signed in to change notification settings - Fork 11
/
.gitlab-ci.yml
388 lines (307 loc) · 8.54 KB
/
.gitlab-ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
###########################################################################
# This file defines the build process for fsleyes, as hosted at:
#
# https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes
#
# 0. docker: (Re-)build docker test images (upstream only, manually
# invoked)
#
# 1. test: Unit tests
#
# 2. style: Check coding style
#
# 3. doc: Building/uploading user and API documentation using
# GitLab Pages.
#
# 4. build: Building source and wheel distributions for
# releases (tags on upstream only)
#
# 5. deploy: Uploading the source and wheel distributions
# PyPI (tags on upstream only, manually invoked)
#
# Custom docker images are used for several jobs - these images are
# available at:
#
# https://hub.docker.com/u/pauldmccarthy/
#
# These images can be re-built by manually invoked CI jobs defined within
# the "docker" stage.
#
# The test and style stages are executed on all branches of upstream and
# fork repositories.
#
# The doc stage executed on release branches of the upstream repository.
#
# The build and deploy stages are only executed on release tags on
# the upstream repository.
#
# Source and wheel distributions are deployed to pypi for release tags.
###########################################################################
stages:
- docker
- test
- style
- doc
- build
- deploy
#################################################################################
# A number of variables must be set for the jobs to work. The following
# variables are implicitly defined in any gitlab CI job:
#
# - CI_PROJECT_PATH - gitlab namespace/project
# - CI_COMMIT_REF_NAME - branch name, provided by gitlab
# - CI_COMMIT_TAG - present if build is running on a tag
#
# These variables must be explicitly set as "secret" variables:
#
# - SSH_PRIVATE_KEY_FSL_DOWNLOAD - private key for downloading some FSL
# files from a remote server (FSL_HOST)
#
# - FSL_HOST: - Username@host to download FSL data from
# (e.g. "paulmc@jalapeno.fmrib.ox.ac.uk")
#
# - FSL_ATLAS_DIR: - Location of the FSL atlas data on
# FSL_HOST.
#
# - TWINE_USERNAME: - Username to use when uploading to pypi
#
# - TWINE_PASSWORD: - Password to use when uploading to pypi
#
# - TWINE_REPOSITORY_URL: - Pypi repository to upload to
#
# - ZENODO_URL: - Zenodo URL to deposit release file to.
#
# - ZENODO_TOKEN: - Zenodo access token.
#
# - ZENODO_DEPOSIT_ID: - Deposit ID of previous Zenodo deposit.
###############################################################################
variables:
UPSTREAM_PROJECT: "fsl/fsleyes/fsleyes"
UPSTREAM_URL: "git@git.fmrib.ox.ac.uk"
####################################
# These anchors are used to restrict
# when and where jobs are executed.
####################################
.only_release_branches: &only_release_branches
only:
- /^v.+$/@fsl/fsleyes/fsleyes
.only_releases: &only_releases
only:
- tags@fsl/fsleyes/fsleyes
.setup_ssh: &setup_ssh
before_script:
- bash ./.ci/setup_ssh.sh
##############
# Docker stage
##############
# (Re-)builds docker images for testing.
.build-docker-image:
stage: docker
image: docker:latest
tags:
- docker_build
services:
- docker:dind
when: manual
allow_failure: true
script:
- mkdir -p $HOME/.docker/
- echo $DOCKER_AUTH_CONFIG > $HOME/.docker/config.json
- TAG="$(date +%Y%m%d).${CI_COMMIT_SHORT_SHA}"
- IMAGE="pauldmccarthy/$(basename $BUILDDIR)"
- DOCKERFILE=${BUILDDIR}/Dockerfile
- docker build -t "${IMAGE}:${TAG}" -t "${IMAGE}:latest" -f ${DOCKERFILE} ./.docker
- docker push "${IMAGE}:${TAG}"
- docker push "${IMAGE}:latest"
build-docker-image-fsleyes-py37-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py37-wxpy4-gtk3
build-docker-image-fsleyes-py38-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py38-wxpy4-gtk3
build-docker-image-fsleyes-py39-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py39-wxpy4-gtk3
build-docker-image-fsleyes-py310-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py310-wxpy4-gtk3
build-docker-image-fsleyes-py311-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py311-wxpy4-gtk3
build-docker-image-fsleyes-py312-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py312-wxpy4-gtk3
build-docker-image-fsleyes-py313-wxpy4-gtk3:
extends: .build-docker-image
variables:
BUILDDIR: .docker/fsleyes-py313-wxpy4-gtk3
############
# Test stage
############
.test_rules: &test_rules
rules:
# Set FSLEYES_SKIP_TESTS to skip tests
- if: '$FSLEYES_SKIP_TESTS != null'
when: never
# Don't test if "[skip-tests]"
# is in the commit message
- if: '$CI_COMMIT_MESSAGE =~ /\[skip-tests\]/'
when: never
- if: '$CI_PIPELINE_SOURCE == "merge_request_event"'
when: on_success
- if: '$CI_PIPELINE_SOURCE == "web"'
when: on_success
# some test jobs are only run on the upstream repo
.test_rules_upstream: &test_rules_upstream
rules:
# Releases are just tags on a release
# branch, so we don't need to test them.
- if: '$CI_COMMIT_TAG != null'
when: never
# Don't test if "[skip-tests]"
# is in the commit message
- if: '$CI_COMMIT_MESSAGE =~ /\[skip-tests\]/'
when: never
# Set FSLEYES_SKIP_TESTS to skip tests
- if: '$FSLEYES_SKIP_TESTS != null'
when: never
- if: '$CI_PROJECT_PATH != $UPSTREAM_PROJECT'
when: never
- if: $CI_PROJECT_PATH == $UPSTREAM_PROJECT && $CI_COMMIT_BRANCH =~ /^v.+$/
when: on_success
- if: '$CI_PIPELINE_SOURCE == "web"'
when: on_success
.test: &test_template
<<: *setup_ssh
<<: *test_rules
tags:
- docker
script:
- bash ./.ci/test_template.sh
artifacts:
when: on_failure
expire_in: 1 day
paths:
- failures/
# offscreen tests only on macos
test:macos:
<<: *test_rules
stage: test
tags:
- macOS
- shell
variables:
MACOS_OVERLAY_TEST: 1
script:
- bash ./.ci/test_template.sh
artifacts:
when: on_failure
expire_in: 1 day
paths:
- failures/
test:3.10:
stage: test
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_template
<<: *test_rules
test:3.11:
stage: test
image: pauldmccarthy/fsleyes-py311-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:3.12:
stage: test
image: pauldmccarthy/fsleyes-py312-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:3.13:
stage: test
image: pauldmccarthy/fsleyes-py313-wxpy4-gtk3
<<: *test_template
<<: *test_rules_upstream
test:build-pypi-dist:
stage: test
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_rules
tags:
- docker
script:
- source /test.venv/bin/activate
- bash ./.ci/build_pypi_dist.sh
#############
# Style stage
#############
style:
stage: style
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
<<: *test_template
variables:
TEST_STYLE: "true"
#############
# Pages stage
#############
pages:
<<: *only_release_branches
tags:
- docker
stage: doc
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
script:
- bash ./.ci/build_userdoc.sh
- bash ./.ci/build_apidoc.sh
artifacts:
paths:
- public
#############
# Build stage
#############
build-pypi-dist:
<<: *only_releases
stage: build
image: pauldmccarthy/fsleyes-py310-wxpy4-gtk3
tags:
- docker
# Make sure that the version in the code is
# up to date (i.e. equal to the tag name).
before_script:
- bash ./.ci/check_version.sh
script:
- bash ./.ci/build_pypi_dist.sh
artifacts:
expire_in: 1 day
paths:
- dist/*tar.gz
- dist/*whl
##############
# Deploy stage
##############
deploy-pypi:
<<: *only_releases
<<: *setup_ssh
stage: deploy
when: manual
image: python:3.10
tags:
- docker
dependencies:
- build-pypi-dist
script:
- bash ./.ci/deploy_pypi.sh
deploy-zenodo:
<<: *only_releases
<<: *setup_ssh
stage: deploy
when: manual
image: python:3.10
tags:
- docker
dependencies:
- build-pypi-dist
script:
- bash ./.ci/zenodo_deposit.sh fsleyes "$ZENODO_URL" "$ZENODO_TOKEN" "$ZENODO_DEPOSIT_ID"