pyproject.toml

[build-system]
requires      = ["setuptools"]
build-backend = "setuptools.build_meta"


[project]
name            = "fslpy"
dynamic         = ["version"]
description     = "FSL Python library"
readme          = {file = "README.rst", content-type="text/x-rst"}
license         = {text = "Apache License Version 2.0"}
requires-python = ">=3.8"
authors         = [{name = "Paul McCarthy", email = "pauldmccarthy@gmail.com"}]

dependencies = [
 "dill",
 "h5py >=2.9",
 "nibabel >=2.4",
 "numpy >=1",
 "scipy >=0.18"
]

classifiers = [
  "Development Status :: 3 - Alpha",
  "Intended Audience :: Developers",
  "License :: OSI Approved :: Apache Software License",
  "Programming Language :: Python :: 3.8",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Topic :: Software Development :: Libraries :: Python Modules"
]


[project.urls]
"Repository"    = "https://git.fmrib.ox.ac.uk/fsl/fslpy/"
"Documentation" = "https://open.win.ox.ac.uk/pages/fsl/fslpy/"


[project.optional-dependencies]
extra = [
  "indexed_gzip >=0.7",
  "wxpython >=4",
  "trimesh >=2.37.29",
  "rtree >=0.8.3",
  "Pillow >=3.2.0"
]
doc = [
  "sphinx",
  "sphinx_rtd_theme"
]
test = [
  "pytest",
  "coverage",
  "pytest-cov",
  "tomli; python_version < \"3.11\""
]
style = [
  "pylint",
  "flake8"
]


[project.scripts]
imcp           = "fsl.scripts.imcp:main"
imln           = "fsl.scripts.imln:main"
immv           = "fsl.scripts.immv:main"
imrm           = "fsl.scripts.imrm:main"
imglob         = "fsl.scripts.imglob:main"
imtest         = "fsl.scripts.imtest:main"
remove_ext     = "fsl.scripts.remove_ext:main"
fsl_abspath    = "fsl.scripts.fsl_abspath:main"
Text2Vest      = "fsl.scripts.Text2Vest:main"
Vest2Text      = "fsl.scripts.Vest2Text:main"
atlasq         = "fsl.scripts.atlasq:main"
atlasquery     = "fsl.scripts.atlasq:atlasquery_emulation"
fsl_ents       = "fsl.scripts.fsl_ents:main"
resample_image = "fsl.scripts.resample_image:main"
fsl_convert_x5 = "fsl.scripts.fsl_convert_x5:main"
fsl_apply_x5   = "fsl.scripts.fsl_apply_x5:main"


[tool.setuptools.packages.find]
include = ["fsl*"]
exclude = ["fsl.tests*"]


[tool.setuptools.package-data]
fsl = ["utils/filetree/trees/*"]


[tool.setuptools.dynamic]
version = {attr = "fsl.version.__version__"}


[tool.coverage.run]
include = ["fsl/*"]
omit    = ["fsl/tests/*", "fsl/data/imagewrapper.py"]


[tool.pytest.ini_options]
testpaths = ["fsl/tests"]
addopts   = "-v --cov=fsl --showlocals --import-mode=importlib"
markers   = [
  "fsltest:    Requires FSL",
  "wxtest:     Requires wxPython",
  "dicomtest:  Requires dcm2niix",
  "meshtest:   Requires trimesh and rtree",
  "igziptest:  Requires indexed_gzip",
  "piltest:    Requires Pillow",
  "noroottest: Need to be executed as non-root user (will fail otherwise)",
  "longtest:   Takes a long time",
  "unixtest:   Only works on *nix systems"]