A free and open-source pedigree tool powered by PhenoTips®

Open Pedigree is a robust browser-based genomic pedigree drawing solution using Prototype, Raphaël, and PhenoTips.

Features

✔ Robust support for complex families, intergenerational linkages, and consanguinity

✔ Shade nodes with disorders and/or candidate genes

✔ Quickly start with family templates

✔ Automatic consanguinity detection

✔ Import from PED, LINKAGE, GEDCOM (Cyrillic), BOADICEA, or GA4GH Pedigree (FHIR)

Getting started

Command line

Quickly get started with open pedigree on your computer:

git clone git@github.com:phenotips/open-pedigree.git
cd open-pedigree
npm install
npm start

Open a browser to http://localhost:9000/

Docker

You can also use the supplied Docker image to run the applicarion. To get started:

git clone git@github.com:phenotips/open-pedigree.git
cd open-pedigree
docker build . -t open-pedigree
docker run -p 9000:9000 -d open-pedigree

Contributing

Contributions welcome! Fork the repository and create a pull request to share your improvements with the community.

In order to ensure that the licensing is clear and stays open, you'll be asked to sign a CLA with your first pull request.

Support

This is free software! Create an issue in GitHub to ask others for help, or try fixing the issue yourself and then make a pull request to contribute it back to the core.

If you are interested in the Enterprise/commercial version, please contact PhenoTips.

License

Copyright (c) 2019-2022 Gene42 Inc. o/a PhenoTips

Open Pedigree is distributed under the LGPL-2.1 (GNU Lesser General Public License).

You can easily comply with this license by:

• including prominent notice of the use of Open Pedigree in your software
• retaining all copyright notices in the software
• ensuring that any and all changes you make to the software are published and open-sourced under the LGPL