diff --git a/elegy/callbacks/__init__.py b/elegy/callbacks/__init__.py index 0f0d7cea..77ea9c41 100644 --- a/elegy/callbacks/__init__.py +++ b/elegy/callbacks/__init__.py @@ -9,6 +9,7 @@ from .sigint import SigInt from .tensorboard import TensorBoard from .terminate_nan import TerminateOnNaN +from .wandb_callback import WandbCallback __all__ = [ "CallbackList", @@ -21,4 +22,5 @@ "RemoteMonitor", "CSVLogger", "TensorBoard", + "WandbCallback" ] diff --git a/elegy/callbacks/wandb_callback.py b/elegy/callbacks/wandb_callback.py new file mode 100644 index 00000000..baccc45f --- /dev/null +++ b/elegy/callbacks/wandb_callback.py @@ -0,0 +1,211 @@ +# Implementation based on tf.keras.callbacks.py and elegy.callbacks.TensorBoard +# https://github.com/tensorflow/tensorflow/blob/v2.2.0/tensorflow/python/keras/callbacks.py +# https://github.com/poets-ai/elegy/blob/master/elegy/callbacks/tensorboard.py + + +import math +import wandb +from typing import Union, Optional, Dict + +from .callback import Callback + + +class WandbCallback(Callback): + """ + Callback that streams epoch results to a [Weights & Biases](https://wandb.ai/) run. + + ```python + wandb.login() + wandb_logger = WandbCallback(project="sample-wandb-project", job_type="train") + model.fit(X_train, Y_train, callbacks=[wandb_logger]) + ``` + """ + + def __init__( + self, + project: Optional[str] = None, + name: Optional[str] = None, + entity: Optional[str] = None, + job_type: Optional[str] = None, + config: Union[Dict, str, None] = None, + update_freq: Union[str, int] = "epoch", + save_model: bool = False, + monitor: str = "val_loss", + mode: str = "min", + **kwargs, + ): + """ + Arguments: + project: (str, optional) The name of the project where you're sending the new run. + If the project is not specified, the run is put in an "Uncategorized" project. + name: (str, optional) A short display name for this run, which is how you'll + identify this run in the UI. By default we generate a random two-word name that + lets you easily cross-reference runs from the table to charts. Keeping these run + names short makes the chart legends and tables easier to read. If you're looking + for a place to save your hyperparameters, we recommend saving those in config. + entity: (str, optional) An entity is a username or team name where you're sending runs. + This entity must exist before you can send runs there, so make sure to create your + account or team in the UI before starting to log runs. If you don't specify an entity, + the run will be sent to your default entity, which is usually your username. + job_type: (str, optional) Specify the type of run, which is useful when you're grouping + runs together into larger experiments using group. For example, you might have multiple + jobs in a group, with job types like train and eval. Setting this makes it easy to + filter and group similar runs together in the UI so you can compare apples to apples. + config: (dict, argparse, absl.flags, str, optional) This sets `wandb.config`, a dictionary-like + object for saving inputs to your job, like hyperparameters for a model or settings for a + data preprocessing job. The config will show up in a table in the UI that you can use to + group, filter, and sort runs. Keys should not contain . in their names, and values should + be under 10 MB. If dict, argparse or `absl.flags`: will load the key value pairs into the + wandb.config object. If str: will look for a yaml file by that name, and load config from + that file into the `wandb.config` object. + update_freq: (str, int)`'batch'` or `'epoch'` or integer. When using `'batch'`, writes the + losses and metrics to TensorBoard after each batch. The same applies for `'epoch'`. If + using an integer, let's say `1000`, the callback will write the metrics and losses to + TensorBoard every 1000 batches. Note that writing too frequently to TensorBoard can slow + down your training. + save_model: (bool) Save a model when monitor beats all previous epochs if set to `True` otherwise + don't save models. + monitor: (str) name of metric to monitor. Defaults to `'val_loss'`. + mode: (str) one of {`'min'`, `'max'`, `'every'`}. `'min'` - save model when monitor is minimized. + `'max'` - save model when monitor is maximized. `'every'` - save model after every epoch. + """ + super().__init__() + self.run = ( + wandb.init( + project=project, + name=name, + entity=entity, + job_type=job_type, + config=config, + **kwargs, + ) + if wandb.run is None + else wandb.run + ) + self.keys = None + self.write_per_batch = True + self._constant_fields = ["size"] + self._constants = {} + self._save_model = save_model + self._monitor = monitor + self._mode = mode + self._monitor_metric_val = math.inf if mode == "min" else -math.inf + self._best_epoch = 0 + self._model_path = f"model-best-0" + self._model_checkpoint = self.model + try: + self.update_freq = int(update_freq) + except ValueError as e: + self.update_freq = 1 + if update_freq == "batch": + self.write_per_batch = True + elif update_freq == "epoch": + self.write_per_batch = False + else: + raise e + + def _gather_configs(self): + module_attributes = vars(vars(self.model)["module"]) + for _var in module_attributes: + if ( + type(module_attributes[_var]) == str + or type(module_attributes[_var]) == int + ): + wandb.run.config[_var] = module_attributes[_var] + + def _add_model_as_artifact(self, model_path: str, epoch: int): + artifact = wandb.Artifact( + f"model-{self.run.name}", + type="model", + metadata={ + "epoch": epoch, + "model_path": model_path + } + ) + artifact.add_dir(model_path) + self.run.log_artifact(artifact) + + def on_train_begin(self, logs=None): + self.steps = self.params["steps"] + self.global_step = 0 + self._gather_configs() + + def on_train_batch_end(self, batch: int, logs=None): + if not self.write_per_batch: + return + logs = logs or {} + for key in self._constant_fields: + self._constants[key] = logs[key] + logs.pop(key, None) + logs.pop("val_" + key, None) + self.global_step = batch + self.current_epoch * (self.steps) + if self.global_step % self.update_freq == 0: + if self.keys is None: + self.keys = logs.keys() + for key in self.keys: + log_key = key + if log_key[:4] != "val_": + log_key = "train_" + log_key + self.run.log({log_key: logs[key]}, step=self.global_step) + + def on_epoch_begin(self, epoch: int, logs=None): + self.current_epoch = epoch + + def on_epoch_end(self, epoch: int, logs=None): + logs = logs or {} + for key in self._constant_fields: + self._constants[key] = logs[key] + logs.pop(key, None) + logs.pop("val_" + key, None) + + if self.keys is None: + self.keys = logs.keys() + + if self.write_per_batch: + for key in logs: + log_key = key + if log_key[:4] != "val_": + log_key = "train_" + log_key + self.run.log({log_key: logs[key]}, step=self.global_step) + + elif epoch % self.update_freq == 0: + for key in logs: + log_key = key + if log_key[:4] != "val_": + log_key = "train_" + log_key + self.run.log({log_key: logs[key]}, step=epoch) + + if self._save_model: + if self._mode == "every": + self._best_epoch = epoch + self._model_path = f"model-{epoch + 1}-{self.run.name}" + print(f"Saving Model at {self._model_path}") + self._model_checkpoint = self.model + self._model_checkpoint.save(self._model_path) + + elif self._mode == "min" and logs[self._monitor] < self._monitor_metric_val: + self._best_epoch = epoch + self._model_path = f"model-best-{epoch + 1}-{self.run.name}" + print( + f"{self._monitor} decreased at epoch {epoch}. Saving Model at {self._model_path}" + ) + self._model_checkpoint = self.model + self._model_checkpoint.save(self._model_path) + self._monitor_metric_val = logs[self._monitor] + + elif self._mode == "max" and logs[self._monitor] > self._monitor_metric_val: + self._best_epoch = epoch + self._model_path = f"model-best-{epoch + 1}-{self.run.name}" + print( + f"{self._monitor} increased at epoch {epoch}. Saving Model at {self._model_path}" + ) + self._model_checkpoint = self.model + self._model_checkpoint.save(self._model_path) + self._monitor_metric_val = logs[self._monitor] + + self._add_model_as_artifact(self._model_path, epoch=self._best_epoch) + + def on_train_end(self, logs=None): + for key in self._constant_fields: + wandb.run.summary[key] = self._constants[key] + self.run.finish() diff --git a/poetry.lock b/poetry.lock index 66cc9573..c3c09078 100644 --- a/poetry.lock +++ b/poetry.lock @@ -44,7 +44,7 @@ frozenlist = ">=1.1.0" [[package]] name = "anyio" -version = "3.4.0" +version = "3.5.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" category = "dev" optional = false @@ -56,7 +56,7 @@ sniffio = ">=1.1" typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] +doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] trio = ["trio (>=0.16)"] @@ -76,20 +76,6 @@ category = "dev" optional = false python-versions = "*" -[[package]] -name = "argcomplete" -version = "1.12.3" -description = "Bash tab completion for argparse" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -importlib-metadata = {version = ">=0.23,<5", markers = "python_version == \"3.7\""} - -[package.extras] -test = ["coverage", "flake8", "pexpect", "wheel"] - [[package]] name = "argon2-cffi" version = "21.3.0" @@ -135,14 +121,14 @@ six = ">=1.6.1,<2.0" [[package]] name = "async-timeout" -version = "4.0.1" +version = "4.0.2" description = "Timeout context manager for asyncio programs" category = "dev" optional = false python-versions = ">=3.6" [package.dependencies] -typing-extensions = ">=3.6.5" +typing-extensions = {version = ">=3.6.5", markers = "python_version < \"3.8\""} [[package]] name = "asynctest" @@ -162,17 +148,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "21.2.0" +version = "21.4.0" description = "Classes Without Boilerplate" category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "babel" @@ -194,19 +180,19 @@ optional = false python-versions = "*" [[package]] -name = "backports.entry-points-selectable" -version = "1.1.1" -description = "Compatibility shim providing selectable entry points for older implementations" +name = "beautifulsoup4" +version = "4.10.0" +description = "Screen-scraping library" category = "dev" optional = false -python-versions = ">=2.7" +python-versions = ">3.0.0" [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +soupsieve = ">1.2" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] +html5lib = ["html5lib"] +lxml = ["lxml"] [[package]] name = "black" @@ -253,11 +239,11 @@ python-versions = "*" [[package]] name = "cachetools" -version = "4.2.4" +version = "5.0.0" description = "Extensible memoizing collections and decorators" category = "dev" optional = false -python-versions = "~=3.5" +python-versions = "~=3.7" [[package]] name = "certifi" @@ -288,7 +274,7 @@ python-versions = ">=3.6.1" [[package]] name = "charset-normalizer" -version = "2.0.9" +version = "2.0.12" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "dev" optional = false @@ -299,7 +285,7 @@ unicode_backport = ["unicodedata2"] [[package]] name = "chex" -version = "0.1.0" +version = "0.1.1" description = "Chex: Testing made fun, in JAX!" category = "main" optional = false @@ -350,11 +336,11 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] name = "coverage" -version = "6.2" +version = "6.3.2" description = "Code coverage measurement for Python" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] toml = ["tomli"] @@ -369,7 +355,7 @@ python-versions = ">=3.6" [[package]] name = "datasets" -version = "1.16.1" +version = "1.18.4" description = "HuggingFace community-driven open-source library of datasets" category = "dev" optional = false @@ -387,6 +373,7 @@ packaging = "*" pandas = "*" pyarrow = ">=3.0.0,<4.0.0 || >4.0.0" requests = ">=2.19.0" +responses = "<0.19" tqdm = ">=4.62.1" xxhash = "*" @@ -394,14 +381,15 @@ xxhash = "*" apache-beam = ["apache-beam (>=2.26.0)"] audio = ["librosa"] benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "transformers (==3.0.2)"] -dev = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch (<8.0.0)", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "soundfile", "transformers", "bs4", "conllu", "h5py", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "torchmetrics (==0.6.0)", "mauve-text", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "librosa", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (>=22.0,<23.0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)", "importlib-resources"] docs = ["docutils (==0.16.0)", "recommonmark", "sphinx (==3.1.2)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinxext-opengraph (==0.4.1)", "sphinx-copybutton", "fsspec (<2021.9.0)", "s3fs", "sphinx-panels", "sphinx-inline-tabs", "myst-parser", "Markdown (!=3.3.5)"] -quality = ["black (==21.4b0)", "flake8 (==3.7.9)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)"] +quality = ["black (>=22.0,<23.0)", "flake8 (>=3.8.3)", "isort (>=5.0.0)", "pyyaml (>=5.3.1)"] s3 = ["fsspec", "boto3", "botocore", "s3fs"] tensorflow = ["tensorflow (>=2.2.0,!=2.6.0,!=2.6.1)"] tensorflow_gpu = ["tensorflow-gpu (>=2.2.0,!=2.6.0,!=2.6.1)"] -tests = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-datadir", "pytest-xdist", "apache-beam (>=2.26.0)", "elasticsearch (<8.0.0)", "aiobotocore", "boto3", "botocore", "faiss-cpu (>=1.6.4)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs (==2021.08.1)", "tensorflow (>=2.3,!=2.6.0,!=2.6.1)", "torch", "torchaudio", "soundfile", "transformers", "bs4", "conllu", "h5py", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "torchmetrics (==0.6.0)", "mauve-text", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "Pillow (>=6.2.1)", "librosa", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] torch = ["torch"] +vision = ["Pillow (>=6.2.1)"] [[package]] name = "debugpy" @@ -413,7 +401,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [[package]] name = "decorator" -version = "5.1.0" +version = "5.1.1" description = "Decorators for Humans" category = "dev" optional = false @@ -475,6 +463,17 @@ python-versions = "*" [package.dependencies] six = ">=1.12.0" +[[package]] +name = "docker-pycreds" +version = "0.4.0" +description = "Python bindings for the docker credentials store API" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.4.0" + [[package]] name = "einops" version = "0.3.2" @@ -485,19 +484,19 @@ python-versions = "*" [[package]] name = "entrypoints" -version = "0.3" +version = "0.4" description = "Discover and load entry points from installed packages." category = "dev" optional = false -python-versions = ">=2.7" +python-versions = ">=3.6" [[package]] name = "filelock" -version = "3.4.0" +version = "3.6.0" description = "A platform independent file lock." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"] @@ -531,14 +530,14 @@ testing = ["atari-py (==0.2.5)", "clu", "gym (==0.18.3)", "jaxlib", "jraph", "ml [[package]] name = "fonttools" -version = "4.28.3" +version = "4.31.2" description = "Tools to manipulate font files" category = "main" optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=13.0.0)", "xattr"] +all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] graphite = ["lz4 (>=1.7.4.2)"] interpolatable = ["scipy", "munkres"] lxml = ["lxml (>=4.0,<5)"] @@ -547,24 +546,24 @@ plot = ["matplotlib"] symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] -unicode = ["unicodedata2 (>=13.0.0)"] +unicode = ["unicodedata2 (>=14.0.0)"] woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] [[package]] name = "frozenlist" -version = "1.2.0" +version = "1.3.0" description = "A list-like structure which implements collections.abc.MutableSequence" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "fsspec" -version = "2022.1.0" +version = "2022.2.0" description = "File-system specification" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] aiohttp = {version = "*", optional = true, markers = "extra == \"http\""} @@ -614,16 +613,39 @@ python-dateutil = ">=2.8.1" [package.extras] dev = ["twine", "markdown", "flake8", "wheel"] +[[package]] +name = "gitdb" +version = "4.0.9" +description = "Git Object Database" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +smmap = ">=3.0.1,<6" + +[[package]] +name = "gitpython" +version = "3.1.27" +description = "GitPython is a python library used to interact with Git repositories" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +gitdb = ">=4.0.1,<5" +typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""} + [[package]] name = "google-auth" -version = "2.3.3" +version = "2.6.2" description = "Google Authentication Library" category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" [package.dependencies] -cachetools = ">=2.0.0,<5.0" +cachetools = ">=2.0.0,<6.0" pyasn1-modules = ">=0.2.1" rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} six = ">=1.9.0" @@ -661,7 +683,7 @@ six = "*" [[package]] name = "grpcio" -version = "1.42.0" +version = "1.44.0" description = "HTTP/2-based RPC framework" category = "dev" optional = false @@ -671,7 +693,7 @@ python-versions = ">=3.6" six = ">=1.5.2" [package.extras] -protobuf = ["grpcio-tools (>=1.42.0)"] +protobuf = ["grpcio-tools (>=1.44.0)"] [[package]] name = "h5py" @@ -687,7 +709,7 @@ numpy = ">=1.14.5" [[package]] name = "huggingface-hub" -version = "0.2.1" +version = "0.4.0" description = "Client library to download and publish models on the huggingface.co hub" category = "dev" optional = false @@ -703,20 +725,20 @@ tqdm = "*" typing-extensions = ">=3.7.4.3" [package.extras] -all = ["pytest", "datasets", "black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] -dev = ["pytest", "datasets", "black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] -quality = ["black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] tensorflow = ["tensorflow"] testing = ["pytest", "datasets"] torch = ["torch"] +all = ["pytest", "datasets", "black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] +dev = ["pytest", "datasets", "black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] +quality = ["black (>=20.8b1)", "isort (>=5.5.4)", "flake8 (>=3.8.3)"] [[package]] name = "identify" -version = "2.4.0" +version = "2.4.12" description = "File identification library for Python" category = "dev" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7" [package.extras] license = ["ukkonen"] @@ -731,20 +753,20 @@ python-versions = ">=3.5" [[package]] name = "importlib-metadata" -version = "4.8.2" +version = "4.11.3" description = "Read metadata from Python packages" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" @@ -763,7 +785,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest- [[package]] name = "ipykernel" -version = "6.6.0" +version = "6.9.2" description = "IPython Kernel for Jupyter" category = "dev" optional = false @@ -771,12 +793,12 @@ python-versions = ">=3.7" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} -argcomplete = {version = ">=1.12.3", markers = "python_version < \"3.8.0\""} debugpy = ">=1.0.0,<2.0" -importlib-metadata = {version = "<5", markers = "python_version < \"3.8.0\""} ipython = ">=7.23.1" jupyter-client = "<8.0" matplotlib-inline = ">=0.1.0,<0.2.0" +nest-asyncio = "*" +psutil = "*" tornado = ">=4.2,<7.0" traitlets = ">=5.1.0,<6.0" @@ -785,7 +807,7 @@ test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] [[package]] name = "ipython" -version = "7.30.1" +version = "7.32.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -825,7 +847,7 @@ python-versions = "*" [[package]] name = "ipywidgets" -version = "7.6.5" +version = "7.7.0" description = "IPython HTML widgets for Jupyter" category = "dev" optional = false @@ -838,14 +860,14 @@ ipython-genutils = ">=0.2.0,<0.3.0" jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} nbformat = ">=4.2.0" traitlets = ">=4.3.1" -widgetsnbextension = ">=3.5.0,<3.6.0" +widgetsnbextension = ">=3.6.0,<3.7.0" [package.extras] test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] [[package]] name = "jax" -version = "0.2.26" +version = "0.2.28" description = "Differentiate, compile, and transform Numpy code." category = "main" optional = false @@ -853,22 +875,22 @@ python-versions = ">=3.7" [package.dependencies] absl-py = "*" -numpy = ">=1.18" +numpy = ">=1.19" opt_einsum = "*" scipy = ">=1.2.1" typing_extensions = "*" [package.extras] -cpu = ["jaxlib (==0.1.75)"] -cuda = ["jaxlib (==0.1.75+cuda11.cudnn82)"] -cuda11_cudnn805 = ["jaxlib (==0.1.75+cuda11.cudnn805)"] -cuda11_cudnn82 = ["jaxlib (==0.1.75+cuda11.cudnn82)"] +cpu = ["jaxlib (==0.1.76)"] +cuda = ["jaxlib (==0.1.76+cuda11.cudnn82)"] +cuda11_cudnn805 = ["jaxlib (==0.1.76+cuda11.cudnn805)"] +cuda11_cudnn82 = ["jaxlib (==0.1.76+cuda11.cudnn82)"] minimum-jaxlib = ["jaxlib (==0.1.74)"] -tpu = ["jaxlib (==0.1.75)", "libtpu-nightly (==0.1.dev20211208)", "requests"] +tpu = ["jaxlib (==0.1.76)", "libtpu-nightly (==0.1.dev20220128)", "requests"] [[package]] name = "jaxlib" -version = "0.1.75" +version = "0.1.76" description = "XLA library for JAX" category = "main" optional = false @@ -877,7 +899,7 @@ python-versions = ">=3.7" [package.dependencies] absl-py = "*" flatbuffers = ">=1.12,<3.0" -numpy = ">=1.18" +numpy = ">=1.19" scipy = "*" [[package]] @@ -937,7 +959,7 @@ dev = ["hypothesis"] [[package]] name = "jsonschema" -version = "4.2.1" +version = "4.4.0" description = "An implementation of JSON Schema validation for Python" category = "dev" optional = false @@ -948,6 +970,7 @@ attrs = ">=17.4.0" importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] @@ -971,7 +994,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.1.0" +version = "7.1.2" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -992,7 +1015,7 @@ test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-comm [[package]] name = "jupyter-console" -version = "6.4.0" +version = "6.4.3" description = "Jupyter terminal console" category = "dev" optional = false @@ -1001,7 +1024,7 @@ python-versions = ">=3.6" [package.dependencies] ipykernel = "*" ipython = "*" -jupyter-client = "*" +jupyter-client = ">=7.0.0" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" @@ -1010,7 +1033,7 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.9.1" +version = "4.9.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -1022,46 +1045,47 @@ traitlets = "*" [[package]] name = "jupyter-server" -version = "1.13.1" +version = "1.15.6" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -anyio = ">=3.1.0,<4" +anyio = ">=3.1.0" argon2-cffi = "*" -ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=6.1.1" jupyter-core = ">=4.6.0" nbconvert = "*" -nbformat = "*" +nbformat = ">=5.2.0" +packaging = "*" prometheus-client = "*" +pywinpty = {version = "*", markers = "os_name == \"nt\""} pyzmq = ">=17" Send2Trash = "*" terminado = ">=0.8.3" tornado = ">=6.1.0" -traitlets = ">=4.2.1" +traitlets = ">=5" websocket-client = "*" [package.extras] -test = ["coverage", "pytest (>=6.0)", "pytest-cov", "pytest-mock", "requests", "pytest-tornasync", "pytest-console-scripts", "ipykernel"] +test = ["coverage", "pytest (>=6.0)", "pytest-cov", "pytest-mock", "pytest-timeout", "requests", "pytest-tornasync", "pytest-console-scripts", "ipykernel"] [[package]] name = "jupyterlab" -version = "3.2.5" +version = "3.3.2" description = "JupyterLab computational environment" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] ipython = "*" jinja2 = ">=2.1" jupyter-core = "*" jupyter-server = ">=1.4,<2.0" -jupyterlab-server = ">=2.3,<3.0" +jupyterlab-server = ">=2.10,<3.0" nbclassic = ">=0.2,<1.0" packaging = "*" tornado = ">=6.1.0" @@ -1083,7 +1107,7 @@ pygments = ">=2.4.1,<3" [[package]] name = "jupyterlab-server" -version = "2.9.0" +version = "2.10.3" description = "A set of server components for JupyterLab and JupyterLab like applications ." category = "dev" optional = false @@ -1104,7 +1128,7 @@ test = ["codecov", "ipykernel", "pytest (>=5.3.2)", "pytest-cov", "jupyter-serve [[package]] name = "jupyterlab-widgets" -version = "1.0.2" +version = "1.1.0" description = "A JupyterLab extension." category = "dev" optional = false @@ -1112,7 +1136,7 @@ python-versions = ">=3.6" [[package]] name = "keras-nightly" -version = "2.8.0.dev2021121308" +version = "2.8.0.dev2021122108" description = "Deep learning for humans." category = "dev" optional = false @@ -1137,12 +1161,15 @@ tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "p [[package]] name = "kiwisolver" -version = "1.3.2" +version = "1.4.0" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false python-versions = ">=3.7" +[package.dependencies] +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + [[package]] name = "libclang" version = "13.0.0" @@ -1327,11 +1354,11 @@ python-versions = "*" [[package]] name = "multidict" -version = "5.2.0" +version = "6.0.2" description = "multidict implementation" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "multiprocess" @@ -1354,47 +1381,48 @@ python-versions = "*" [[package]] name = "nbclassic" -version = "0.3.4" +version = "0.3.7" description = "Jupyter Notebook as a Jupyter Server extension." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -jupyter-server = ">=1.8,<2.0" +jupyter-server = ">=1.8" notebook = "<7" +notebook-shim = ">=0.1.0" [package.extras] test = ["pytest", "pytest-tornasync", "pytest-console-scripts"] [[package]] name = "nbclient" -version = "0.5.9" +version = "0.5.13" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7.0" [package.dependencies] jupyter-client = ">=6.1.5" nbformat = ">=5.0" nest-asyncio = "*" -traitlets = ">=4.2" +traitlets = ">=5.0.0" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] [[package]] name = "nbconvert" -version = "6.3.0" +version = "6.4.4" description = "Converting Jupyter Notebooks" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] +beautifulsoup4 = "*" bleach = "*" defusedxml = "*" entrypoints = ">=0.2.2" @@ -1410,29 +1438,28 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"] -webpdf = ["pyppeteer (==0.2.6)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)"] +webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.1.3" +version = "5.2.0" description = "The Jupyter Notebook format" category = "dev" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" [package.dependencies] -ipython-genutils = "*" jsonschema = ">=2.4,<2.5.0 || >2.5.0" jupyter-core = "*" traitlets = ">=4.1" [package.extras] fast = ["fastjsonschema"] -test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] +test = ["check-manifest", "fastjsonschema", "testpath", "pytest"] [[package]] name = "nest-asyncio" @@ -1452,7 +1479,7 @@ python-versions = "*" [[package]] name = "notebook" -version = "6.4.6" +version = "6.4.10" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -1465,7 +1492,7 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" -nbconvert = "*" +nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" prometheus-client = "*" @@ -1480,9 +1507,23 @@ docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "m json-logging = ["json-logging"] test = ["pytest", "coverage", "requests", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] +[[package]] +name = "notebook-shim" +version = "0.1.0" +description = "A shim layer for notebook traits and config" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +jupyter-server = ">=1.8,<2.0" + +[package.extras] +test = ["pytest", "pytest-tornasync", "pytest-console-scripts"] + [[package]] name = "numpy" -version = "1.21.4" +version = "1.21.5" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -1490,16 +1531,16 @@ python-versions = ">=3.7,<3.11" [[package]] name = "oauthlib" -version = "3.1.1" +version = "3.2.0" description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" category = "dev" optional = false python-versions = ">=3.6" [package.extras] -rsa = ["cryptography (>=3.0.0,<4)"] +rsa = ["cryptography (>=3.0.0)"] signals = ["blinker (>=1.4.0)"] -signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] +signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"] [[package]] name = "opt-einsum" @@ -1586,6 +1627,14 @@ category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +[[package]] +name = "pathtools" +version = "0.1.2" +description = "File system general utilities" +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "pexpect" version = "4.8.0" @@ -1607,19 +1656,19 @@ python-versions = "*" [[package]] name = "pillow" -version = "8.4.0" +version = "9.0.1" description = "Python Imaging Library (Fork)" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "platformdirs" -version = "2.4.0" +version = "2.5.1" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] @@ -1641,7 +1690,7 @@ dev = ["pre-commit", "tox"] [[package]] name = "pre-commit" -version = "2.16.0" +version = "2.17.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false @@ -1658,18 +1707,32 @@ virtualenv = ">=20.0.8" [[package]] name = "prometheus-client" -version = "0.12.0" +version = "0.13.1" description = "Python client for the Prometheus monitoring system." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.extras] twisted = ["twisted"] +[[package]] +name = "promise" +version = "2.3" +description = "Promises/A+ implementation for Python" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +six = "*" + +[package.extras] +test = ["pytest (>=2.7.3)", "pytest-cov", "coveralls", "futures", "pytest-benchmark", "mock"] + [[package]] name = "prompt-toolkit" -version = "3.0.24" +version = "3.0.28" description = "Library for building powerful interactive command lines in Python" category = "dev" optional = false @@ -1680,12 +1743,23 @@ wcwidth = "*" [[package]] name = "protobuf" -version = "3.19.1" +version = "3.19.4" description = "Protocol Buffers" category = "main" optional = false python-versions = ">=3.5" +[[package]] +name = "psutil" +version = "5.9.0" +description = "Cross-platform lib for process and system monitoring in Python." +category = "dev" +optional = false +python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +test = ["ipaddress", "mock", "unittest2", "enum34", "pywin32", "wmi"] + [[package]] name = "ptyprocess" version = "0.7.0" @@ -1704,11 +1778,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "pyarrow" -version = "6.0.1" +version = "7.0.0" description = "Python library for Apache Arrow" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] numpy = ">=1.16.6" @@ -1742,7 +1816,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.10.0" +version = "2.11.2" description = "Pygments is a syntax highlighting package written in Python." category = "main" optional = false @@ -1761,7 +1835,7 @@ Markdown = ">=3.2" [[package]] name = "pyparsing" -version = "3.0.6" +version = "3.0.7" description = "Python parsing module" category = "main" optional = false @@ -1772,11 +1846,11 @@ diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" -version = "0.18.0" +version = "0.18.1" description = "Persistent/Functional/Immutable data structures" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "pytest" @@ -1841,7 +1915,7 @@ tests = ["coverage (>=5.2.1,<6.0.0)", "invoke (>=1.4.1,<2.0.0)", "marshmallow (> [[package]] name = "pytz" -version = "2021.3" +version = "2022.1" description = "World timezone definitions, modern and historical" category = "dev" optional = false @@ -1849,7 +1923,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "302" +version = "303" description = "Python for Window Extensions" category = "dev" optional = false @@ -1857,11 +1931,11 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "1.1.6" +version = "2.0.5" description = "Pseudo terminal support for Windows from Python." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "pyyaml" @@ -1896,7 +1970,7 @@ py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "qtconsole" -version = "5.2.1" +version = "5.2.2" description = "Jupyter Qt console" category = "dev" optional = false @@ -1918,23 +1992,29 @@ test = ["flaky", "pytest", "pytest-qt"] [[package]] name = "qtpy" -version = "1.11.3" -description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5, PyQt4 and PySide) and additional custom QWidgets." +version = "2.0.1" +description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." category = "dev" optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" +python-versions = ">=3.6" + +[package.dependencies] +packaging = "*" + +[package.extras] +test = ["pytest (>=6.0.0)", "pytest-cov (>=3.0.0)", "pytest-qt"] [[package]] name = "regex" -version = "2021.11.10" +version = "2022.3.15" description = "Alternative regular expression module, to replace re." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "requests" -version = "2.26.0" +version = "2.27.1" description = "Python HTTP for Humans." category = "dev" optional = false @@ -1952,7 +2032,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "requests-oauthlib" -version = "1.3.0" +version = "1.3.1" description = "OAuthlib authentication support for Requests." category = "dev" optional = false @@ -1965,9 +2045,24 @@ requests = ">=2.0.0" [package.extras] rsa = ["oauthlib[signedtoken] (>=3.0.0)"] +[[package]] +name = "responses" +version = "0.18.0" +description = "A utility library for mocking out the `requests` Python library." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +requests = ">=2.0,<3.0" +urllib3 = ">=1.25.10" + +[package.extras] +tests = ["pytest (>=4.6)", "coverage (>=6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "types-mock", "types-requests", "mypy"] + [[package]] name = "rich" -version = "10.16.0" +version = "10.16.2" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" category = "main" optional = false @@ -2017,9 +2112,50 @@ nativelib = ["pyobjc-framework-cocoa", "pywin32"] objc = ["pyobjc-framework-cocoa"] win32 = ["pywin32"] +[[package]] +name = "sentry-sdk" +version = "1.5.8" +description = "Python client for Sentry (https://sentry.io)" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +certifi = "*" +urllib3 = ">=1.10.0" + +[package.extras] +aiohttp = ["aiohttp (>=3.5)"] +beam = ["apache-beam (>=2.12)"] +bottle = ["bottle (>=0.12.13)"] +celery = ["celery (>=3)"] +chalice = ["chalice (>=1.16.0)"] +django = ["django (>=1.8)"] +falcon = ["falcon (>=1.4)"] +flask = ["flask (>=0.11)", "blinker (>=1.1)"] +httpx = ["httpx (>=0.16.0)"] +pure_eval = ["pure-eval", "executing", "asttokens"] +pyspark = ["pyspark (>=2.4.4)"] +quart = ["quart (>=0.16.1)", "blinker (>=1.1)"] +rq = ["rq (>=0.6)"] +sanic = ["sanic (>=0.8)"] +sqlalchemy = ["sqlalchemy (>=1.2)"] +tornado = ["tornado (>=5)"] + +[[package]] +name = "setproctitle" +version = "1.2.2" +description = "A Python module to customize the process title" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +test = ["pytest (>=6.1,<6.2)"] + [[package]] name = "setuptools-scm" -version = "6.3.2" +version = "6.4.2" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false @@ -2030,7 +2166,8 @@ packaging = ">=20.0" tomli = ">=1.0.0" [package.extras] -toml = ["setuptools (>=42)", "tomli (>=1.0.0)"] +test = ["pytest (>=6.2)", "virtualenv (>20)"] +toml = ["setuptools (>=42)"] [[package]] name = "sh" @@ -2040,6 +2177,14 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "shortuuid" +version = "1.0.8" +description = "A generator library for concise, unambiguous and URL-safe UUIDs." +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "six" version = "1.16.0" @@ -2048,6 +2193,14 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "smmap" +version = "5.0.0" +description = "A pure Python implementation of a sliding window memory map manager" +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "sniffio" version = "1.2.0" @@ -2056,6 +2209,14 @@ category = "dev" optional = false python-versions = ">=3.5" +[[package]] +name = "soupsieve" +version = "2.3.1" +description = "A modern CSS selector implementation for Beautiful Soup." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "tabulate" version = "0.8.9" @@ -2098,7 +2259,7 @@ python-versions = ">=3.6" [[package]] name = "tensorboard-plugin-wit" -version = "1.8.0" +version = "1.8.1" description = "What-If Tool TensorBoard plugin." category = "dev" optional = false @@ -2106,7 +2267,7 @@ python-versions = "*" [[package]] name = "tensorboardx" -version = "2.4.1" +version = "2.5" description = "TensorBoardX lets you watch Tensors Flow without Tensorflow" category = "main" optional = false @@ -2115,14 +2276,22 @@ python-versions = "*" [package.dependencies] numpy = "*" protobuf = ">=3.8.0" +six = "*" [[package]] name = "tensorflow-io-gcs-filesystem" -version = "0.22.0" +version = "0.24.0" description = "TensorFlow IO" category = "dev" optional = false -python-versions = ">=3.6, <3.10" +python-versions = ">=3.7, <3.11" + +[package.extras] +tensorflow = ["tensorflow (>=2.8.0,<2.9.0)"] +tensorflow-aarch64 = ["tensorflow-aarch64 (>=2.8.0,<2.9.0)"] +tensorflow-cpu = ["tensorflow-cpu (>=2.8.0,<2.9.0)"] +tensorflow-gpu = ["tensorflow-gpu (>=2.8.0,<2.9.0)"] +tensorflow-rocm = ["tensorflow-rocm (>=2.8.0,<2.9.0)"] [[package]] name = "termcolor" @@ -2134,11 +2303,11 @@ python-versions = "*" [[package]] name = "terminado" -version = "0.12.1" +version = "0.13.3" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] ptyprocess = {version = "*", markers = "os_name != \"nt\""} @@ -2150,18 +2319,18 @@ test = ["pytest"] [[package]] name = "testpath" -version = "0.5.0" +version = "0.6.0" description = "Test utilities for code working with files and commands" category = "dev" optional = false python-versions = ">= 3.5" [package.extras] -test = ["pytest", "pathlib2"] +test = ["pytest"] [[package]] name = "tf-estimator-nightly" -version = "2.8.0.dev2021121309" +version = "2.8.0.dev2021122109" description = "TensorFlow Estimator." category = "dev" optional = false @@ -2207,11 +2376,11 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "tomli" -version = "1.2.2" +version = "2.0.1" description = "A lil' TOML parser" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "toolz" @@ -2247,7 +2416,7 @@ python-versions = ">= 3.5" [[package]] name = "tqdm" -version = "4.62.3" +version = "4.63.0" description = "Fast, Extensible Progress Meter" category = "dev" optional = false @@ -2274,7 +2443,7 @@ test = ["pytest"] [[package]] name = "treeo" -version = "0.0.8" +version = "0.0.9" description = "" category = "main" optional = false @@ -2285,7 +2454,7 @@ typing-extensions = ">=3.7.0" [[package]] name = "treex" -version = "0.6.5" +version = "0.6.8" description = "" category = "main" optional = false @@ -2297,11 +2466,11 @@ flax = ">=0.3.4,<0.4.0" optax = ">=0.0.9,<0.0.10" PyYAML = ">=5.4.1,<6.0.0" rich = ">=10.7.0,<11.0.0" -treeo = ">=0.0.8,<0.0.9" +treeo = ">=0.0.9,<0.0.10" [[package]] name = "typed-ast" -version = "1.5.1" +version = "1.5.2" description = "a fork of Python 2 and 3 ast modules with type comment support" category = "dev" optional = false @@ -2326,7 +2495,7 @@ doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=5.4.0,<6.0.0)", "markdown- [[package]] name = "typing-extensions" -version = "4.0.1" +version = "4.1.1" description = "Backported and Experimental Type Hints for Python 3.6+" category = "main" optional = false @@ -2334,27 +2503,26 @@ python-versions = ">=3.6" [[package]] name = "urllib3" -version = "1.26.7" +version = "1.26.9" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] -brotli = ["brotlipy (>=0.6.0)"] +brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"] secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] name = "virtualenv" -version = "20.10.0" +version = "20.13.4" description = "Virtual Python Environment builder" category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [package.dependencies] -"backports.entry-points-selectable" = ">=1.0.4" distlib = ">=0.3.1,<1" filelock = ">=3.2,<4" importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} @@ -2365,6 +2533,41 @@ six = ">=1.9.0,<2" docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"] testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"] +[[package]] +name = "wandb" +version = "0.12.11" +description = "A CLI and library for interacting with the Weights and Biases API." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +Click = ">=7.0,<8.0.0 || >8.0.0" +docker-pycreds = ">=0.4.0" +GitPython = ">=1.0.0" +pathtools = "*" +promise = ">=2.0,<3" +protobuf = ">=3.12.0" +psutil = ">=5.0.0" +python-dateutil = ">=2.6.1" +PyYAML = "*" +requests = ">=2.0.0,<3" +sentry-sdk = ">=1.0.0" +setproctitle = "*" +shortuuid = ">=0.5.0" +six = ">=1.13.0" +yaspin = ">=1.0.0" + +[package.extras] +aws = ["boto3"] +azure = ["azure-storage-blob"] +gcp = ["google-cloud-storage"] +grpc = ["grpcio (>=1.27.2)"] +kubeflow = ["kubernetes", "minio", "google-cloud-storage", "sh"] +launch = ["jupyter-repo2docker", "nbconvert", "chardet", "iso8601", "typing-extensions", "yaspin"] +media = ["numpy", "moviepy", "pillow", "bokeh", "soundfile", "plotly", "rdkit-pypi"] +sweeps = ["numpy (>=1.15,<1.21)", "scipy (>=1.5.4)", "pyyaml", "scikit-learn (==0.24.1)", "jsonschema (>=3.2.0)", "jsonref (>=0.2)", "pydantic (>=1.8.2)"] + [[package]] name = "watchdog" version = "2.1.6" @@ -2394,7 +2597,7 @@ python-versions = "*" [[package]] name = "websocket-client" -version = "1.2.3" +version = "1.3.1" description = "WebSocket client for Python with low level API options" category = "dev" optional = false @@ -2407,7 +2610,7 @@ test = ["websockets"] [[package]] name = "werkzeug" -version = "2.0.2" +version = "2.0.3" description = "The comprehensive WSGI web application library." category = "dev" optional = false @@ -2418,7 +2621,7 @@ watchdog = ["watchdog"] [[package]] name = "widgetsnbextension" -version = "3.5.2" +version = "3.6.0" description = "IPython HTML widgets for Jupyter" category = "dev" optional = false @@ -2429,7 +2632,7 @@ notebook = ">=4.4.1" [[package]] name = "wrapt" -version = "1.13.3" +version = "1.14.0" description = "Module for decorators, wrappers and monkey patching." category = "dev" optional = false @@ -2437,11 +2640,11 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [[package]] name = "xxhash" -version = "2.0.2" +version = "3.0.0" description = "Python binding for xxHash" category = "dev" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=3.6" [[package]] name = "yarl" @@ -2456,22 +2659,33 @@ idna = ">=2.0" multidict = ">=4.0" typing-extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""} +[[package]] +name = "yaspin" +version = "2.1.0" +description = "Yet Another Terminal Spinner" +category = "dev" +optional = false +python-versions = ">=3.6.2,<4.0.0" + +[package.dependencies] +termcolor = ">=1.1.0,<2.0.0" + [[package]] name = "zipp" -version = "3.6.0" +version = "3.7.0" description = "Backport of pathlib-compatible object wrapper for zip files" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", 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