diff --git a/images.toml b/images.toml index c0eae28..0f9e100 100644 --- a/images.toml +++ b/images.toml @@ -9,6 +9,7 @@ expansionhunter_bw2 = 'b85cba004fba4e0223e632fae576bc7fad0da804' fastp = '0.23.4' fastqe = '0.3.1' fastqc = '0.11.9' +fraser = '1.12.1' gatk = '4.2.6.1' hap-py = '0.3.15' haplocheckcli = '64293b3481d52025a01a293f6cc891546c30660e' diff --git a/images/fraser/Dockerfile b/images/fraser/Dockerfile new file mode 100644 index 0000000..527cbc4 --- /dev/null +++ b/images/fraser/Dockerfile @@ -0,0 +1,15 @@ +FROM debian:bookworm-slim + +ENV MAMBA_ROOT_PREFIX /root/micromamba +ENV PATH $MAMBA_ROOT_PREFIX/bin:$PATH +ARG VERSION=${VERSION:-1.12.1} + +RUN apt-get update && apt-get install -y git wget bash bzip2 zip && \ + rm -r /var/lib/apt/lists/* && \ + rm -r /var/cache/apt/* && \ + wget -qO- https://api.anaconda.org/download/conda-forge/micromamba/0.8.2/linux-64/micromamba-0.8.2-he9b6cbd_0.tar.bz2 | tar -xvj -C /usr/local bin/micromamba && \ + mkdir ${MAMBA_ROOT_PREFIX} && \ + micromamba install -y --prefix ${MAMBA_ROOT_PREFIX} -c bioconda -c conda-forge \ + python=3.10 r-base=4.3.1 r-reshape2=1.4.4 r-tidyverse=2.0.0 \ + bioconductor-fraser=${VERSION} bioconductor-txdb.hsapiens.ucsc.hg38.knowngene bioconductor-org.hs.eg.db && \ + rm -r /root/micromamba/pkgs