From 2ad8589d34a916671115c6b9bb38ef23279c0939 Mon Sep 17 00:00:00 2001
From: Matt Welland <mattwellie@gmail.com>
Date: Tue, 12 Dec 2023 12:02:06 +1100
Subject: [PATCH] Adds Tabix to StrVCTVRE (#124)

---
 images/strvctvre/Dockerfile | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/images/strvctvre/Dockerfile b/images/strvctvre/Dockerfile
index a065b4a..0a7251d 100644
--- a/images/strvctvre/Dockerfile
+++ b/images/strvctvre/Dockerfile
@@ -14,14 +14,14 @@ RUN apt-get update && \
         liblzma-dev \
         libncurses5-dev \
         python3-dev \
+        tabix \
         wget && \
     apt-get clean -y  && \
     rm -rf /var/lib/apt/lists/* && \
     git clone https://github.com/andrewSharo/StrVCTVRE && \
     cd StrVCTVRE && \
-    git checkout ${VERSION}
-
-RUN pip install \
+    git checkout ${VERSION} && \
+    pip install \
     cyvcf2 \
     Cython \
     joblib \
@@ -31,3 +31,5 @@ RUN pip install \
     pybigwig \
     pysam \
     scikit-learn==1.0.2
+
+WORKDIR /StrVCTVRE