Replace submodule with copy

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "libpotassco"]
-	path = libpotassco
-	url = https://github.com/potassco/libpotassco.git

libpotassco/.gitignore

@@ -0,0 +1,2 @@
+*.swp
+build*

libpotassco/.travis.yml

@@ -0,0 +1,47 @@
+sudo: false
+language: cpp
+matrix:
+  include:
+    - os: linux
+      compiler: gcc
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+            - george-edison55-precise-backports
+          packages:
+            - g++-4.9
+            - cmake
+            - cmake-data
+      env:
+        - COMPILER='g++-4.9'
+    - os: linux
+      compiler: gcc
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+            - george-edison55-precise-backports
+          packages:
+            - g++-5
+            - cmake
+            - cmake-data
+      env:
+        - COMPILER='g++-5'
+    - os: osx
+      osx_image: xcode8
+      env:
+        - COMPILER='clang++'
+
+install:
+  - export CMAKE=cmake  
+  - export CXX=$COMPILER
+  - $CMAKE --version
+  - $CXX --version
+script:
+  - mkdir $CXX && cd $CXX
+  - $CMAKE -DCMAKE_CXX_COMPILER=$CXX -DLIB_POTASSCO_BUILD_TESTS=ON -DCMAKE_BUILD_TYPE=Debug -DCMAKE_CXX_FLAGS="-Wall -Wextra" ../
+  - make -j3 && make test CTEST_OUTPUT_ON_FAILURE=1
+  - $CMAKE -DCMAKE_CXX_COMPILER=$CXX -DLIB_POTASSCO_BUILD_TESTS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_FLAGS="-Wall -Wextra" ../
+  - make -j3 && make test CTEST_OUTPUT_ON_FAILURE=1
+

libpotassco/CMakeLists.txt

@@ -0,0 +1,66 @@
+cmake_minimum_required(VERSION 3.1)
+project(LIB_POTASSCO VERSION 1.0 LANGUAGES CXX)
+if (POLICY CMP0063)
+	cmake_policy(SET CMP0063 NEW)
+endif()
+# enable folders in IDEs like Visual Studio
+set_property(GLOBAL PROPERTY USE_FOLDERS ON)
+
+option(LIB_POTASSCO_BUILD_TESTS "whether or not to build tests"          OFF)
+option(LIB_POTASSCO_BUILD_APP   "whether or not to build lpconvert tool" ON)
+option(LIB_POTASSCO_INSTALL_LIB "whether or not to install libpotassco"  OFF)
+set(include_dest  "include/potassco-${LIB_POTASSCO_VERSION}")
+set(library_dest  "lib/potassco-${LIB_POTASSCO_VERSION}")
+
+if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
+	message(STATUS "No build type selected - using 'Release'")
+	set(CMAKE_BUILD_TYPE "Release")
+endif()
+
+if (NOT MSVC)
+	if (NOT CMAKE_ARCHIVE_OUTPUT_DIRECTORY)
+		set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
+	endif()
+	if (NOT CMAKE_LIBRARY_OUTPUT_DIRECTORY)
+		set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
+	endif()
+	if (NOT CMAKE_RUNTIME_OUTPUT_DIRECTORY)
+		set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
+	endif()
+else()
+    set(VC_RELEASE_LINK_OPTIONS /LTCG)
+	SET(CMAKE_EXE_LINKER_FLAGS_RELEASE    "${CMAKE_EXE_LINKER_FLAGS_RELEASE}    ${VC_RELEASE_LINK_OPTIONS}")
+	SET(CMAKE_MODULE_LINKER_FLAGS_RELEASE "${CMAKE_MODULE_LINKER_FLAGS_RELEASE} ${VC_RELEASE_LINK_OPTIONS}")
+	SET(CMAKE_SHARED_LINKER_FLAGS_RELEASE "${CMAKE_SHARED_LINKER_FLAGS_RELEASE} ${VC_RELEASE_LINK_OPTIONS}")
+	SET(CMAKE_STATIC_LINKER_FLAGS_RELEASE "${CMAKE_STATIC_LINKER_FLAGS_RELEASE} ${VC_RELEASE_LINK_OPTIONS}")
+endif()
+
+add_subdirectory(src)
+if(LIB_POTASSCO_BUILD_TESTS)
+	enable_testing()
+	add_subdirectory(tests)
+endif()
+if(LIB_POTASSCO_BUILD_APP)
+	add_subdirectory(app)
+endif()
+
+# optional doc target
+find_package(Doxygen)
+if(DOXYGEN_FOUND)
+	set(doxyfile "${CMAKE_CURRENT_SOURCE_DIR}/doc/Doxyfile")
+	add_custom_target(doc_potassco
+		COMMAND ${DOXYGEN_EXECUTABLE} ${doxyfile}
+		WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/doc"
+		COMMENT "Generating documentation..."
+		VERBATIM)
+	set_target_properties(doc_potassco PROPERTIES FOLDER doc)
+endif()
+
+# export
+configure_file(cmake/potassco-config-version.cmake.in
+	${CMAKE_CURRENT_BINARY_DIR}/potassco-config-version.cmake
+	@ONLY)
+if(LIB_POTASSCO_INSTALL_LIB)
+	install(FILES cmake/potassco-config.cmake ${CMAKE_CURRENT_BINARY_DIR}/potassco-config-version.cmake DESTINATION "${library_dest}")
+	install(EXPORT potassco DESTINATION "${library_dest}")
+endif()

libpotassco/LICENSE

@@ -0,0 +1,22 @@
+libpotassco
+
+Copyright (c) 2015-2017 Benjamin Kaufmann
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of
+this software and associated documentation files (the "Software"), to deal in
+the Software without restriction, including without limitation the rights to
+use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+of the Software, and to permit persons to whom the Software is furnished to do
+so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
+

libpotassco/README.md

@@ -0,0 +1,64 @@
+# libpotassco
+
+[![Build Status master](https://badges.herokuapp.com/travis/potassco/libpotassco?branch=master&label=master)](https://travis-ci.org/potassco/libpotassco?branch=master)
+
+libpotassco is a small C++ utility library used by various potassco projects
+that mostly provides functions and types for
+ - parsing, writing, and converting logic programs in [aspif][aspif] and smodels format,
+ - passing information between a grounder and a solver,
+ - defining and parsing command-line options and for creating command-line applications.
+
+Furthermore, it comes with the tool `lpconvert` that converts either between aspif and smodels format
+or to a human-readable text format.
+
+libpotassco is part of the potassco project. For further information please visit:
+
+  http://potassco.org/
+
+## Installation
+
+The preferred way to build libpotassco is to use [CMake][cmake] 
+version 3.1 or later.
+
+The following options can be used to configure the build:
+
+    LIB_POTASSCO_BUILD_APP  : whether or not to build the lpconvert tool
+    LIB_POTASSCO_BUILD_TESTS: whether or not to build unit tests
+
+For example, to build libpotassco in release mode in directory `<dir>`:
+
+    cmake -H. -B<dir>
+    cmake --build <dir>
+
+The following options can be used to configure the installation:
+
+    CMAKE_INSTALL_PREFIX    : install path prefix
+    LIB_POTASSCO_INSTALL_LIB: whether or not to install libpotassco
+
+For example, to install lpconvert and libpotassco under `/home/<usr>`:
+
+    cmake -H. -B<dir> -DCMAKE_INSTALL_PREFIX=/home/<usr> -DLIB_POTASSCO_INSTALL_LIB=ON
+    cmake --build <dir> --target install
+
+To use libpotassco in a cmake-based project either:
+
+- Place the library inside your project, e.g. using [git submodules](http://git-scm.com/docs/git-submodule).
+- Call `add_subdirectory(<path_to_libpotassco>)`.
+
+or, if libpotassco is installed in `CMAKE_PREFIX_PATH`:
+- Call `find_package(potassco <major>.<minor> CONFIG)`.
+
+Finally, call `target_link_libraries(your_target PUBLIC potassco)` to link to the potassco library.
+
+## Documentation
+Source code documentation can be generated with [Doxygen][doxygen].
+Either explicitly:
+
+    cd doc/
+    doxygen
+
+or via the `doc_potassco` target when using cmake.
+
+[aspif]: http://www.cs.uni-potsdam.de/wv/pdfformat/gekakaosscwa16b.pdf  "Aspif specification"
+[cmake]: https://cmake.org/
+[doxygen]: http://www.stack.nl/~dimitri/doxygen/

libpotassco/app/CMakeLists.txt

@@ -0,0 +1,5 @@
+add_executable(lpconvert lpconvert.cpp)
+target_link_libraries(lpconvert libpotassco)
+set_target_properties(lpconvert PROPERTIES FOLDER exe)
+
+install(TARGETS lpconvert EXPORT lpconvert DESTINATION "bin")

libpotassco/app/lpconvert.cpp

@@ -0,0 +1,123 @@
+//
+// Copyright (c) 2015-2017 Benjamin Kaufmann
+//
+// This file is part of Potassco.
+//
+// Permission is hereby granted, free of charge, to any person obtaining a copy
+// of this software and associated documentation files (the "Software"), to
+// deal in the Software without restriction, including without limitation the
+// rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+// sell copies of the Software, and to permit persons to whom the Software is
+// furnished to do so, subject to the following conditions:
+//
+// The above copyright notice and this permission notice shall be included in
+// all copies or substantial portions of the Software.
+//
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+// FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
+// IN THE SOFTWARE.
+//
+
+#include <potassco/aspif.h>
+#include <potassco/aspif_text.h>
+#include <potassco/convert.h>
+#include <potassco/application.h>
+#include <potassco/program_opts/typed_value.h>
+#include <fstream>
+#include <iostream>
+#include <cctype>
+#include <cstdlib>
+
+using namespace Potassco::ProgramOptions;
+
+class LpConvert : public Potassco::Application {
+public:
+	virtual const char* getName()       const { return "lpconvert"; }
+	virtual const char* getVersion()    const { return "1.0.0"; }
+	virtual PosOption   getPositional() const { return &positional; }
+	virtual const char* getUsage()      const {
+		return
+			"[options] [<file>]\n"
+			"Convert program in <file> or standard input";
+	}
+	virtual void initOptions(OptionContext& root);
+	virtual void validateOptions(const OptionContext&, const ParsedOptions&, const ParsedValues&) {}
+	virtual void setup() {}
+	virtual void run();
+	virtual void printVersion() {
+		Potassco::Application::printVersion();
+		printf("libpotassco version %s\n", LIB_POTASSCO_VERSION);
+		printf("Copyright (C) Benjamin Kaufmann\n");
+		printf("License: The MIT License <https://opensource.org/licenses/MIT>\n");
+		fflush(stdout);
+	}
+private:
+	static bool positional(const std::string&, std::string& optOut) {
+		optOut = "input";
+		return true;
+	}
+	static int error(int line, const char* what) {
+		fprintf(stderr, "*** ERROR: In line %d: %s\n", line, what);
+		static_cast<LpConvert*>(Application::getInstance())->exit(EXIT_FAILURE);
+		return EXIT_FAILURE;
+	}
+	std::string input_;
+	std::string output_;
+	bool potassco_;
+	bool filter_;
+	bool text_;
+};
+
+void LpConvert::initOptions(OptionContext& root) {
+	OptionGroup convert("Conversion Options");
+	convert.addOptions()
+		("input,i,@2", storeTo(input_),  "Input file")
+		("potassco,p", flag(potassco_ = false), "Enable potassco extensions")
+		("filter,f"  , flag(filter_ = false), "Hide converted potassco predicates")
+		("output,o"  , storeTo(output_)->arg("<file>"), "Write output to <file> (default: stdout)")
+		("text,t"    , flag(text_ = false), "Convert to ground text format")
+	;
+	root.add(convert);
+}
+void LpConvert::run() {
+	std::ifstream iFile;
+	std::ofstream oFile;
+	if (!input_.empty() && input_ != "-") {
+		iFile.open(input_.c_str());
+		POTASSCO_EXPECT(iFile.is_open(), "Could not open input file!");
+	}
+	if (!output_.empty() && output_ != "-") {
+		POTASSCO_EXPECT(input_ != output_, "Input and output must be different!");
+		oFile.open(output_.c_str());
+		POTASSCO_EXPECT(oFile.is_open(), "Could not open output file!");
+	}
+	std::istream& in = iFile.is_open() ? iFile : std::cin;
+	std::ostream& os = oFile.is_open() ? oFile : std::cout;
+	Potassco::AspifTextOutput text(os);
+	POTASSCO_EXPECT(in.peek() == 'a' || std::isdigit(in.peek()), "Unrecognized input format!");
+	if (in.peek() == 'a') {
+		Potassco::SmodelsOutput  writer(os, potassco_, 0);
+		Potassco::SmodelsConvert smodels(writer, potassco_);
+		Potassco::readAspif(in, !text_ ? static_cast<Potassco::AbstractProgram&>(smodels) : text, &error);
+	}
+	else {
+		Potassco::AspifOutput aspif(os);
+		Potassco::SmodelsInput::Options opts;
+		if (potassco_) {
+			opts.enableClaspExt().convertEdges().convertHeuristic();
+			if (filter_) { opts.dropConverted(); }
+		}
+		Potassco::readSmodels(in, !text_? static_cast<Potassco::AbstractProgram&>(aspif) : text, &error, opts);
+	}
+	iFile.close();
+	oFile.close();
+}
+
+int main(int argc, char** argv) {
+	LpConvert app;
+	return app.main(argc, argv);
+}

libpotassco/cmake/potassco-config-version.cmake.in

@@ -0,0 +1,19 @@
+# Note: Adapted from Jonathan Müller's blog post on supporting CMake install:
+# https://foonathan.github.io/blog/2016/03/03/cmake-install.html
+#
+# checks version: major must match, minor must be less than or equal
+
+set(PACKAGE_VERSION @LIB_POTASSCO_VERSION@)
+
+if("${PACKAGE_FIND_VERSION_MAJOR}" EQUAL "@LIB_POTASSCO_VERSION_MAJOR@")
+    if ("${PACKAGE_FIND_VERSION_MINOR}" EQUAL "@LIB_POTASSCO_VERSION_MINOR@")
+        set(PACKAGE_VERSION_EXACT TRUE)
+    elseif(NOT ("@LIB_POTASSCO_VERSION_MAJOR@" EQUAL 0)
+           AND "${PACKAGE_FIND_VERSION_MINOR}" LESS "@LIB_POTASSCO_VERSION_MINOR@")
+        set(PACKAGE_VERSION_COMPATIBLE TRUE)
+    else()
+        set(PACKAGE_VERSION_UNSUITABLE TRUE)
+    endif()
+else()
+    set(PACKAGE_VERSION_UNSUITABLE TRUE)
+endif()

libpotassco/cmake/potassco-config.cmake

@@ -0,0 +1,2 @@
+include("${CMAKE_CURRENT_LIST_DIR}/potassco.cmake")
+