NAMESPACE

# Generated by roxygen2: do not edit by hand

export(clusterBanksy)
export(clusterNames)
export(compareClusters)
export(computeBanksy)
export(connectClusters)
export(getBanksyMatrix)
export(runBanksyPCA)
export(runBanksyUMAP)
export(simulateDataset)
export(smoothLabels)
importFrom(RcppHungarian,HungarianSolver)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(aricode,AMI)
importFrom(aricode,ARI)
importFrom(aricode,MARI)
importFrom(aricode,MARIraw)
importFrom(aricode,NID)
importFrom(aricode,NMI)
importFrom(aricode,NVI)
importFrom(aricode,RI)
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,`:=`)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(dbscan,kNN)
importFrom(dbscan,sNN)
importFrom(igraph,as.undirected)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph_from_data_frame)
importFrom(irlba,prcomp_irlba)
importFrom(leidenAlg,leiden.community)
importFrom(matrixStats,rowSds)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(stats,dnorm)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(utils,combn)
importFrom(utils,packageVersion)
importFrom(utils,tail)
importFrom(uwot,umap)