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Add marginal log likelihood sampling #549

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BradyPlanden opened this issue Nov 8, 2024 · 0 comments · May be fixed by #550
Open
4 tasks

Add marginal log likelihood sampling #549

BradyPlanden opened this issue Nov 8, 2024 · 0 comments · May be fixed by #550
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enhancement New feature or request

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@BradyPlanden
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Feature description

Add marginal likelihood sampling methods to enable model selection workflows. A few common implementations are:

  • Annealed Importance Sampling [1]
  • Bridge Sampling [2]
  • Nested Sampling [3]
  • Bayesian Quadrature [4]
  1. R. M. Neal, ‘Annealed Importance Sampling’, Sep. 04, 1998, arXiv: arXiv:physics/9803008.
  2. Bennett, C. H. Efficient estimation of free energy differences from Monte Carlo data. Journal of Computational Physics, 22(2):245–268, 1976. Direct PDF
  3. J. Skilling, ‘Nested Sampling’, in AIP Conference Proceedings, Garching (Germany): AIP, 2004, pp. 395–405. doi: 10.1063/1.1835238.
  4. H. Chai, J.-F. Ton, R. Garnett, and M. A. Osborne, ‘Automated Model Selection with Bayesian Quadrature’, Mar. 01, 2019, arXiv: arXiv:1902.09724.

Motivation

Marginal log-likelihood is a very useful metric for model selection; however, direct computation of this integral is commonly intractable due to dimensional expansion for anything but the lowest number of parameters. To acquire this information, sampling and alternative bayesian integration methods have been investigated.

Possible implementation

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Additional context

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@BradyPlanden BradyPlanden added the enhancement New feature or request label Nov 8, 2024
@BradyPlanden BradyPlanden linked a pull request Nov 8, 2024 that will close this issue
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