Add transforming adaptation

CHANGELOG.md

@@ -2,14 +2,16 @@
 
 All notable changes to this project will be documented in this file.
 
-## [0.12.0] - 2024-07-05
+## [0.13.0] - 2024-10-23
 
 ### Bug Fixes
 
 - Expose adaptation settings (Adrian Seyboldt)
 
 - Append missing values for non-diverging draws (Adrian Seyboldt)
 
+- Fix bug where step size stats were not updated after tuning (Adrian Seyboldt)
+
 
 ### Features
 
@@ -21,6 +23,14 @@ All notable changes to this project will be documented in this file.
 
 - Add low-rank modified mass matrix adaptation (Adrian Seyboldt)
 
+- Make cpu_math parallelization configurable (Adrian Seyboldt)
+
+- Add transforming adaptation (Adrian Seyboldt)
+
+- Improve error info for BadInitGrad (Adrian Seyboldt)
+
+- Do not report invalid gradients for transform adapt (Adrian Seyboldt)
+
 
 ### Miscellaneous Tasks
 
@@ -30,11 +40,19 @@ All notable changes to this project will be documented in this file.
 
 - Update changelog (Adrian Seyboldt)
 
+- Prepare release (Adrian Seyboldt)
+
+- Prepare release (Adrian Seyboldt)
+
+- Update dependencies (Adrian Seyboldt)
+
 
 ### Refactor
 
 - Switch to arrow-rs (Adrian Seyboldt)
 
+- Refactor mass matrix adaptation traits (Adrian Seyboldt)
+
 
 ### Styling
 

Cargo.toml

@@ -1,9 +1,9 @@
 [package]
 name = "nuts-rs"
-version = "0.12.1"
+version = "0.13.0"
 authors = [
-  "Adrian Seyboldt <adrian.seyboldt@gmail.com>",
-  "PyMC Developers <pymc.devs@gmail.com>",
+    "Adrian Seyboldt <adrian.seyboldt@gmail.com>",
+    "PyMC Developers <pymc.devs@gmail.com>",
 ]
 edition = "2021"
 license = "MIT"
@@ -23,10 +23,10 @@ rand_distr = "0.4.3"
 multiversion = "0.7.2"
 itertools = "0.13.0"
 thiserror = "1.0.43"
-arrow = { version = "52.0.0", default-features = false, features = ["ffi"] }
+arrow = { version = "53.1.0", default-features = false, features = ["ffi"] }
 rand_chacha = "0.3.1"
 anyhow = "1.0.72"
-faer = "0.19.1"
+faer = { version = "0.19.4", default-features = false, features = ["std"] }
 pulp = "0.18.21"
 rayon = "1.10.0"
 
@@ -36,7 +36,7 @@ pretty_assertions = "1.4.0"
 criterion = "0.5.1"
 nix = "0.29.0"
 approx = "0.5.1"
-ndarray = "0.15.6"
+ndarray = "0.16.1"
 
 [[bench]]
 name = "sample"