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mappingsOrthoXMLOO.xml
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mappingsOrthoXMLOO.xml
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<?xml version="1.0" encoding="UTF-8"?>
<Alignment>
<schemas><schema>1406106202578/orthoxml.xsd</schema></schemas>
<xmls><xml>1406106195967/InParanoid.A.fumigatus-E.coliK12.ortho.XML</xml>
</xmls>
<ontotarget>1406106207741/orthology.owl</ontotarget>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch>
<nodepath>//orthologGroup</nodepath>
</arch>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch>
<nodepath>/orthoXML/species/database/genes/gene/@id</nodepath>
</arch>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://miuras.inf.um.es/ontologies/swit/ncbi.owl#NCBI_1</id></class>
<arch>
<nodepath>/orthoXML/species</nodepath>
<infopath>@NCBITaxId</infopath>
<valuepath>@name</valuepath>
<specificURI>http://identifiers.org/taxonomy/</specificURI>
</arch>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch>
<nodepath>//paralogGroup</nodepath>
</arch>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch>
<nodepath>./geneRef/@id</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch>
<nodepath>./geneRef/@id</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch>
<nodepath>./orthologGroup</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch>
<nodepath>./paralogGroup</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch>
<nodepath>./paralogGroup</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasHomologous</id></predicate>
<target>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch>
<nodepath>./orthologGroup</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch>
<nodepath>/orthoXML/species/database/genes/gene/@id</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/dc/terms/identifier</id></predicate>
<target>
<arch>
<valuepath>../@geneId</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch><nodepath>/orthoXML/species/database/genes/gene/@id</nodepath></arch>
</source>
<predicate><id>http://purl.obolibrary.org/obo/RO_0002162</id></predicate>
<target>
<class><id>http://miuras.inf.um.es/ontologies/swit/ncbi.owl#NCBI_1</id></class>
<arch>
<nodepath>../../../../.</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#OrthologyDataset</id></class>
<arch>
<nodepath>/orthoXML</nodepath>
<infopath>@name</infopath>
</arch>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#OrthologyDataset</id></class>
<arch>
<nodepath>/orthoXML/@origin</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/pav/version</id></predicate>
<target>
<arch>
<valuepath>/orthoXML/@originVersion</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#OrthologyDataset</id></class>
<arch>
<nodepath>/orthoXML/@origin</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#hasSource</id></predicate>
<target>
<arch>
<valuepath>/orthoXML/@origin</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch>
<nodepath>//orthologGroup</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/dc/terms/identifier</id></predicate>
<target>
<arch>
<valuepath>./@id</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://rdfs.org/ns/void#inDataset</id></predicate>
<target>
<class><id>http://purl.org/net/orth#OrthologyDataset</id></class>
<arch>
<nodepath>/orthoXML/@origin</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://rdfs.org/ns/void#inDataset</id></predicate>
<target>
<class><id>http://purl.org/net/orth#OrthologyDataset</id></class>
<arch>
<nodepath>/orthoXML/@origin</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#Protein</id></class>
<arch>
<nodepath>/orthoXML/species/database/genes/gene/@id</nodepath>
</arch>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#Protein</id></class>
<arch>
<nodepath>/orthoXML/species/database/genes/gene/@id</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/dc/terms/identifier</id></predicate>
<target>
<arch>
<valuepath>../@protId</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#Gene</id></class>
<arch><nodepath>/orthoXML/species/database/genes/gene/@id</nodepath></arch>
</source>
<predicate><id>http://semanticscience.org/resource/SIO_010078</id></predicate>
<target>
<class><id>http://purl.org/net/orth#Protein</id></class>
<arch>
<nodepath>.</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://semanticscience.org/resource/SIO_000750</id></class>
<arch>
<nodepath>/orthoXML/species/database</nodepath>
</arch>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://semanticscience.org/resource/SIO_000750</id></class>
<arch>
<nodepath>/orthoXML/species/database</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/pav/version</id></predicate>
<target>
<arch>
<valuepath>./@version</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://semanticscience.org/resource/SIO_000750</id></class>
<arch>
<nodepath>/orthoXML/species/database</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/dc/terms/identifier</id></predicate>
<target>
<arch>
<valuepath>./@name</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#Protein</id></class>
<arch><nodepath>/orthoXML/species/database/genes/gene/@id</nodepath></arch>
</source>
<predicate><id>http://purl.obolibrary.org/obo/RO_0001018</id></predicate>
<target>
<class><id>http://semanticscience.org/resource/SIO_000750</id></class>
<arch>
<nodepath>../../../.</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="TaxRange"]/@value</nodepath>
<valuepath>@value</valuepath>
</arch>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="TaxRange"]/@value</nodepath>
<valuepath>@value</valuepath>
</arch>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasTaxonomicRange</id></predicate>
<target>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>./property[@name="TaxRange"]/@value</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasTaxonomicRange</id></predicate>
<target>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>./property[@name="TaxRange"]/@value</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="TaxRange"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRange</id></predicate>
<target>
<arch>
<valuepath>.</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="TaxRange"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRange</id></predicate>
<target>
<arch>
<valuepath>.</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="TaxRange"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRangeId</id></predicate>
<target>
<arch>
<valuepath>../../property[@name="taxon_id"]/@value</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="TaxRange"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRangeId</id></predicate>
<target>
<arch>
<valuepath>../../property[@name="taxon_id"]/@value</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="taxon_name"]/@value</nodepath>
<valuepath>@value</valuepath>
</arch>
</map>
<map>
<type>Arch2Class</type>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="taxon_name"]/@value</nodepath>
<valuepath>@value</valuepath>
</arch>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#OrthologsCluster</id></class>
<arch><nodepath>//orthologGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasTaxonomicRange</id></predicate>
<target>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>./property[@name="taxon_name"]/@value</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Rel</type>
<source>
<class><id>http://purl.org/net/orth#ParalogsCluster</id></class>
<arch><nodepath>//paralogGroup</nodepath></arch>
</source>
<predicate><id>http://purl.org/net/orth#hasTaxonomicRange</id></predicate>
<target>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>./property[@name="taxon_name"]/@value</nodepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="taxon_name"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRange</id></predicate>
<target>
<arch>
<valuepath>.</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="taxon_name"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRange</id></predicate>
<target>
<arch>
<valuepath>.</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//orthologGroup/property[@name="taxon_name"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRangeId</id></predicate>
<target>
<arch>
<valuepath>../../property[@name="taxon_id"]/@value</valuepath>
</arch>
</target>
</map>
<map>
<type>Arch2Prop</type>
<source>
<class><id>http://purl.org/net/orth#TaxonomicRange</id></class>
<arch>
<nodepath>//paralogGroup/property[@name="taxon_name"]/@value</nodepath>
</arch>
</source>
<predicate><id>http://purl.org/net/orth#taxRangeId</id></predicate>
<target>
<arch>
<valuepath>../../property[@name="taxon_id"]/@value</valuepath>
</arch>
</target>
</map>
</Alignment>