diff --git a/setup.py b/setup.py
index 684c6046f..187e82956 100644
--- a/setup.py
+++ b/setup.py
@@ -42,11 +42,13 @@
       test_suite='nose.collector',
       packages=['qiita_core',
                 'qiita_db',
-                'qiita_db/metadata_template/',
+                'qiita_db/handlers',
+                'qiita_db/metadata_template',
                 'qiita_pet',
                 'qiita_pet/uimodules',
                 'qiita_pet/handlers',
                 'qiita_pet/handlers/study_handlers',
+                'qiita_pet/handlers/api_proxy',
                 'qiita_ware'
                 ],
       package_data={