From 0be276d6ad9c623cf277fab6297ca9c30438baa8 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Fri, 12 May 2023 10:15:52 -0700 Subject: [PATCH 01/35] WIP DRY refactoring Goal is to refactor code so that there is minimal duplication, easily extensible to enable metatranscriptomics and future Assay types, and breakout all of the functionality from the main plugin function so they can be tested properly. --- qp_klp/__init__.py | 2 - qp_klp/klp.py | 178 ++++++++--- qp_klp/klp_util.py | 126 +++++++- qp_klp/process_amplicon_job.py | 468 ----------------------------- qp_klp/process_metagenomics_job.py | 437 --------------------------- 5 files changed, 254 insertions(+), 957 deletions(-) delete mode 100644 qp_klp/process_amplicon_job.py delete mode 100644 qp_klp/process_metagenomics_job.py diff --git a/qp_klp/__init__.py b/qp_klp/__init__.py index c8bb1222..6b055682 100644 --- a/qp_klp/__init__.py +++ b/qp_klp/__init__.py @@ -5,9 +5,7 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- - from qiita_client import QiitaPlugin, QiitaCommand - from .klp import sequence_processing_pipeline diff --git a/qp_klp/klp.py b/qp_klp/klp.py index 680f510f..313b264d 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -5,17 +5,20 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- - from functools import partial -from inspect import stack from os import environ +from qp_klp.klp_util import StatusUpdate from os import makedirs from os.path import join -from qp_klp.process_metagenomics_job import process_metagenomics -from qp_klp.process_amplicon_job import process_amplicon +from qiita_client import ArtifactInfo +from qp_klp.klp_util import (update_blanks_in_qiita, generate_special_map, + generate_pipeline, update_prep_templates, + get_registered_samples_in_qiita) +from random import sample as rsampl from sequence_processing_pipeline.Pipeline import Pipeline from sequence_processing_pipeline.PipelineError import PipelineError -from qp_klp.klp_util import StatusUpdate +from qp_klp.AmpliconStep import AmpliconStep +from qp_klp.MetagenomicStep import MetagenomicStep CONFIG_FP = environ["QP_KLP_CONFIG_FP"] @@ -40,66 +43,155 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): bool, list, str The results of the job """ - run_identifier = parameters.pop('run_identifier') user_input_file = parameters.pop('sample_sheet') lane_number = parameters.pop('lane_number') - job_pool_size = 30 - - # checking if this is running as part of the unittest - # https://stackoverflow.com/a/25025987 - skip_exec = True if [x for x in stack() if - 'unittest' in x.filename] else False - - # StatusUpdate uses qclient to easily update the status-line and maintain - # a certain amount of state needed to provide the updates users are - # accustomed to. E.g. "Step 1 of 6: Setting up pipeline" - status_line = StatusUpdate(qclient, job_id) - - status_line.update_current_message("Step 1: Setting up pipeline") if {'body', 'content_type', 'filename'} != set(user_input_file): return False, None, ("This doesn't appear to be a valid sample sheet " "or mapping file; please review.") - outpath = partial(join, out_dir) - final_results_path = outpath('final_results') + out_path = partial(join, out_dir) + final_results_path = out_path('final_results') makedirs(final_results_path, exist_ok=True) # replace any whitespace in the filename with underscores - uif_path = outpath(user_input_file['filename'].replace(' ', '_')) - # save raw data to file - with open(uif_path, 'w') as f: - f.write(user_input_file['body']) + uif_path = out_path(user_input_file['filename'].replace(' ', '_')) if Pipeline.is_sample_sheet(uif_path): # if file follows basic sample-sheet format, then it is most likely # a sample-sheet, even if it's an invalid one. - try: - ainfo = process_metagenomics(uif_path, lane_number, qclient, - run_identifier, out_dir, job_id, - skip_exec, job_pool_size, - final_results_path, CONFIG_FP, - status_line) - except PipelineError as e: - return False, None, str(e) + pipeline_type = 'metagenomic' + step_count = 6 elif Pipeline.is_mapping_file(uif_path): # if file is readable as a basic TSV and contains all of the required # headers, then treat this as a mapping file, even if it's an invalid # one. - try: - ainfo = process_amplicon(uif_path, qclient, run_identifier, - out_dir, job_id, skip_exec, - job_pool_size, final_results_path, - CONFIG_FP, status_line) - except PipelineError as e: - return False, None, str(e) + pipeline_type = 'amplicon' + lane_number = -1 + step_count = 5 else: # file doesn't look like a sample-sheet, or a valid mapping file. return False, None, ("Your uploaded file doesn't appear to be a sample" "-sheet or a mapping-file.") - status_line.update_current_message("Main Pipeline Finished, processing " - "results") + status_line = StatusUpdate(qclient, job_id, step_count) + status_line.update_current_message("Setting up pipeline") + + # save raw data to file + with open(uif_path, 'w') as f: + f.write(user_input_file['body']) + + try: + pipeline = generate_pipeline(pipeline_type, + uif_path, + lane_number, + CONFIG_FP, + run_identifier, + out_dir, + job_id) + + errors = [] + sn_tid_map_by_project = {} + + # TODO: Update get_project_info() so that it can return a list of + # samples in projects['samples']. Include blanks in projects['blanks'] + projects = pipeline.get_project_info(short_names=True) + + for project in projects: + qsam, tids = get_registered_samples_in_qiita(qclient, + project['qiita_id']) + + # compare the list of samples from the user against the list of + # registered samples from Qiita. If the project has tube-ids, then + # compare against tids rather than qsam. + samples = project['samples'] + sample_name_diff = samples - tids if tids else samples - qsam + + if tids: + # strip any leading zeroes from the sample-ids. Note that + # if a sample-id has more than one leading zero, all of + # them will be removed. + my_samples = {x.lstrip('0') for x in my_samples} + # once any leading zeros have been removed, recalculate + # sample_name_diff before continuing processing. + sample_name_diff = my_samples - qsam + + # before we report as an error, check tube_id. + if pipeline_type == 'metagenomic': + tids = qclient.get(f'{qurl}/categories=tube_id')[ + 'samples'] + + # generate a map of sample_names to tube_ids for + # GenPrepFileJob. + sn_tid_map_by_project[project_name] = { + y[0]: x.replace(f'{qiita_id}.', '') for x, y in + tids.items()} + tids = set(sn_tid_map_by_project[project_name].keys()) + tube_id_diff = my_samples - tids + if not tube_id_diff: + continue + len_tube_id_overlap = len(tube_id_diff) + tidsx = ', '.join( + tids if len(tids) < 6 else rsampl(tids, k=5)) + + error_tube_id = ( + f'tube_id in Qiita but {len_tube_id_overlap} missing ' + f'samples. Some samples from tube_id: {tidsx}.') + + len_overlap = len(sample_name_diff) + # selecting at random k=5 samples to minimize space in display + samx = ', '.join(qsam if len(qsam) < 6 else rsampl(qsam, k=5)) + + # selecting the up to 4 first samples to minimize space in + # display + missing = ', '.join(sorted(sample_name_diff)[:4]) + errors.append( + f'{project_name} has {len_overlap} missing samples (i.e. ' + f'{missing}). Some samples from Qiita: {samx}. ' + f'{error_tube_id}') + + if errors: + raise PipelineError('\n'.join(errors)) + + # find the uploads directory all trimmed files will need to be + # moved to and generate a map. + special_map = generate_special_map( + qclient.get("/qiita_db/artifacts/types/"), + pipeline.get_project_info()) + + if pipeline.type == 'metagenomic': + step = MetagenomicStep(pipeline, job_id, status_line, + sn_tid_map_by_project) + else: + # pipeline.type == 'amplicon': + step = AmpliconStep(pipeline, job_id, status_line, + sn_tid_map_by_project) + + step.convert_bcl_to_fastq() + + step.quality_control() + + step.generate_reports() + + step.generate_prep_file() + + sifs = step.work_in_progress() + + update_blanks_in_qiita(sifs, qclient) + + prep_file_paths = step.get_prep_file_paths() + + update_prep_templates(qclient, prep_file_paths) + + # generate commands to execute + step.generate_commands() + + step.execute_commands() + + except PipelineError as e: + return False, None, str(e) # return success, ainfo, and the last status message. - return True, ainfo, status_line.msg + paths = [(f'{final_results_path}/', 'directory')] + return (True, [ArtifactInfo('output', 'job-output-folder', paths)], + status_line.msg) diff --git a/qp_klp/klp_util.py b/qp_klp/klp_util.py index 8ed78a42..a40e5da0 100644 --- a/qp_klp/klp_util.py +++ b/qp_klp/klp_util.py @@ -1,6 +1,11 @@ -from os.path import join import pandas as pd from json import dumps +from metapool import KLSampleSheet +from os import makedirs +from os.path import join +from sequence_processing_pipeline.Pipeline import Pipeline +from sequence_processing_pipeline.PipelineError import PipelineError +from collections import defaultdict def update_blanks_in_qiita(sifs, qclient): @@ -74,23 +79,30 @@ def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): class StatusUpdate(): - def __init__(self, qclient, job_id): + def __init__(self, qclient, job_id, step_count): self.qclient = qclient self.job_id = job_id self.msg = '' + self.current_step = 0 + self.step_count = step_count - def update_job_step(self, status, id): + def update_job_status(self, status, id): # internal function implements a callback function for Pipeline.run(). # :param id: PBS/Torque/or some other informative and current job id. # :param status: status message self.qclient.update_job_step(self.job_id, - self.msg + f" ({id}: {status})") + self.msg + f" ({id}: {status})") - def update_current_message(self, msg): + def update_current_message(self, msg, include_step=True): # internal function that sets current_message to the new value before # updating the job step in the UI. - self.msg = msg - self.qclient.update_job_step(self.job_id, msg) + if include_step: + self.current_step += 1 + self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" + else: + self.msg = msg + + self.qclient.update_job_step(self.job_id, self.msg) class FailedSamplesRecord: @@ -149,3 +161,103 @@ def parse_prep_file(prep_file_path): # convert to standard dictionary. return metadata.to_dict('index') + + +def update_sample_sheet(sample_sheet_path, lane_number): + # use KLSampleSheet functionality to add/overwrite lane number. + sheet = KLSampleSheet(sample_sheet_path) + for sample in sheet: + sample['Lane'] = f'{lane_number}' + + with open(sample_sheet_path, 'w') as f: + sheet.write(f) + +def generate_special_map(results, projects): + # this function should be able to be tested by passing in simulated = + # results from qclient. + + # trimmed files are stored by qiita_id. Find the qiita_id + # associated with each project and ensure a subdirectory exists + # for when it comes time to move the trimmed files. + special_map = [] + for project in projects: + upload_path = join(results['uploads'], project['qiita_id']) + makedirs(upload_path, exist_ok=True) + special_map.append((project['project_name'], upload_path, + project['qiita_id'])) + + return special_map + +def generate_pipeline(pipeline_type, input_file_path, lane_number,config_fp, + run_identifier, out_dir, job_id): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + update_sample_sheet(input_file_path, lane_number) + return Pipeline(config_fp, run_identifier, input_file_path, None, + out_dir, job_id, pipeline_type) + elif pipeline_type == 'amplicon': + return Pipeline(config_fp, run_identifier, None, input_file_path, + out_dir, job_id, pipeline_type) + else: + raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") + +def get_data_type(pipeline_type, target_gene=None): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + return pipeline_type + elif pipeline_type == 'amplicon': + if target_gene: + for key in {'16S', '18S', 'ITS'}: + if key in target_gene: + return key + else: + raise ValueError("target_gene must be specified for amplicon type") + else: + raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") + + +def update_prep_templates(qclient, prep_file_paths): + ''' + Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. + :param qclient: + :param prep_file_paths: + :return: A dict of lists of prep-ids, keyed by study-id. + ''' + results = defaultdict(list) + + for study_id in prep_file_paths: + for prep_file_path in prep_file_paths[study_id]: + metadata = parse_prep_file(prep_file_path) + target_gene = metadata[list(metadata.keys())[0]]['target_gene'] + + data = {'prep_info': dumps(metadata), + 'study': study_id, + 'data_type': get_data_type(target_gene)} + + reply = qclient.post('/qiita_db/prep_template/', data=data) + prep_id = reply['prep'] + results[study_id].append(prep_id) + + return results + +def get_registered_samples_in_qiita(qclient, qiita_id): + ''' + Obtain lists for sample-names and tube-ids registered in Qiita. + :param qclient: QiitaClient object + :param qiita_id: Qiita ID for the project in question. + :return: a tuple of lists, one for sample-names and another for tube-ids. + ''' + samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') + + # remove Qiita ID as a prefix from the sample-names. + samples = {x.replace(f'{qiita_id}.', '') for x in samples} + + # find out if tube-ids are registered in the study. + categories = qclient.get(f'/api/v1/study/{qiita_id}' + '/samples/info')['categories'] + + if 'tube_id' in categories: + tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' + 'categories=tube_id')['samples'] + else: + tids = None + + return (samples, tids) diff --git a/qp_klp/process_amplicon_job.py b/qp_klp/process_amplicon_job.py deleted file mode 100644 index 20b54f11..00000000 --- a/qp_klp/process_amplicon_job.py +++ /dev/null @@ -1,468 +0,0 @@ -from metapool.prep import remove_qiita_id -from os import listdir, makedirs -from os import walk -from os.path import exists, join, isfile, basename -from qiita_client import ArtifactInfo -from qp_klp.klp_util import (map_sample_names_to_tube_ids, - update_blanks_in_qiita, parse_prep_file) -from random import sample as rsampl -from sequence_processing_pipeline.ConvertJob import ConvertJob -from sequence_processing_pipeline.FastQCJob import FastQCJob -from sequence_processing_pipeline.GenPrepFileJob import GenPrepFileJob -from sequence_processing_pipeline.Pipeline import Pipeline -from sequence_processing_pipeline.PipelineError import PipelineError -from subprocess import Popen, PIPE -import pandas as pd -import shutil -from json import dumps -from itertools import chain -from collections import defaultdict - - -def process_amplicon(mapping_file_path, qclient, run_identifier, out_dir, - job_id, skip_exec, job_pool_size, final_results_path, - config_fp, status_line): - - # Note: FailedSamplesRecord is not used by process_amplicon as the - # samples are processed as a single fastq file and hence that info - # is not available. - - # Create a Pipeline object - try: - pipeline = Pipeline(config_fp, run_identifier, None, - mapping_file_path, out_dir, job_id) - except PipelineError as e: - # Pipeline is the object that finds the input fp, based on - # a search directory set in configuration.json and a run_id. - if str(e).endswith("could not be found"): - msg = f"A path for {run_identifier} could not be found." - raise PipelineError(msg) - elif str(e).startswith("Sample-sheet has the following errors:"): - status_line.update_current_message(str(e)) - raise ValueError(str(e)) - else: - raise e - - # perform sample-id validation against Qiita - projects = pipeline.get_project_info() - - errors = [] - sn_tid_map_by_project = {} - - for project in projects: - project_name_with_qid = project['project_name'] - - # remove the qiita-id prepending the project_name - project_name = remove_qiita_id(project['project_name']) - qiita_id = project['qiita_id'] - - if qiita_id == project_name: - raise PipelineError("Values in the project_name column must " - "be appended with a Qiita ID.") - - # assume the BLANKS in the mapping-file are not prepended w/qiita-id - # or some other value. Confirmed w/wet-lab. - df = pipeline.mapping_file - df = df[df['project_name'] == project_name_with_qid] - - mf_samples = {s for s in df['sample_name'] - if not s.startswith('BLANK')} - - # collect needed info from Qiita here. - url = f'/api/v1/study/{qiita_id}/samples' - qsam = qclient.get(url) - qsam = {x.replace(f'{qiita_id}.', '') for x in qsam} - tube_id_present = 'tube_id' in qclient.get(f'{url}/info')['categories'] - if tube_id_present: - tids = qclient.get(f'{url}/categories=tube_id')['samples'] - - # compare the list of samples from the mapping file against the - # list of samples from Qiita. - sample_name_diff = mf_samples - qsam - sn_tid_map_by_project[project_name] = None - - if sample_name_diff: - # if tube_id is defined in the Qiita study, then any sample_names - # missing from the mapping-file may simply have a leading zero - # present. - if tube_id_present: - # strip any leading zeroes from the sample-ids. Note that - # if a sample-id has more than one leading zero, all of - # them will be removed. - mf_samples = {x.lstrip('0') for x in mf_samples} - # once any leading zeros have been removed, recalculate - # sample_name_diff before continuing processing. - sample_name_diff = mf_samples - qsam - - # before we report as an error, check tube_id. - - # generate a map of sample_names to tube_ids for - # GenPrepFileJob. - sn_tid_map_by_project[project_name] = { - y[0]: x.replace(f'{qiita_id}.', '') for x, y in - tids.items()} - tids = set(sn_tid_map_by_project[project_name].keys()) - tube_id_diff = mf_samples - tids - if not tube_id_diff: - continue - len_tube_id_overlap = len(tube_id_diff) - tidsx = ', '.join(tids if len(tids) < 6 else rsampl(tids, k=5)) - - error_tube_id = ( - f'tube_id in Qiita but {len_tube_id_overlap} missing ' - f'samples. Some samples from tube_id: {tidsx}.') - else: - error_tube_id = 'No tube_id column in Qiita.' - - len_overlap = len(sample_name_diff) - # selecting at random k=5 samples to minimize space in display - samx = ', '.join(qsam if len(qsam) < 6 else rsampl(qsam, k=5)) - # selecting the up to 4 first samples to minimize space in - # display - missing = ', '.join(sorted(sample_name_diff)[:4]) - errors.append( - f'{project_name} has {len_overlap} missing samples (i.e. ' - f'{missing}). Some samples from Qiita: {samx}. ' - f'{error_tube_id}') - - if errors: - raise PipelineError('\n'.join(errors)) - - # find the uploads directory all trimmed files will need to be - # moved to. - results = qclient.get("/qiita_db/artifacts/types/") - - # trimmed files are stored by qiita_id. Find the qiita_id - # associated with each project and ensure a subdirectory exists - # for when it comes time to move the trimmed files. - special_map = [] - for project in pipeline.get_project_info(): - upload_path = join(results['uploads'], project['qiita_id']) - makedirs(upload_path, exist_ok=True) - special_map.append((project['project_name'], upload_path, - project['qiita_id'])) - - status_line.update_current_message("Step 2 of 5: Converting BCL to fastq") - - config = pipeline.configuration['bcl2fastq'] - convert_job = ConvertJob(pipeline.run_dir, - pipeline.output_path, - # note that pipeline.sample_sheet in this case - # is the dummy sample-sheet created by Pipeline. - pipeline.sample_sheet, - config['queue'], - config['nodes'], - config['nprocs'], - config['wallclock_time_in_hours'], - config['per_process_memory_limit'], - config['executable_path'], - config['modules_to_load'], - job_id) - - # if skip_execution is True, then each Pipeline object will be - # initialized, their assertions tested, and an ainfo will be - # returned to the caller. However the Jobs will not actually - # be executed. This is useful for testing. - if not skip_exec: - convert_job.run(callback=status_line.update_job_step) - - status_line.update_current_message("Step 3 of 5: Generating FastQC & " - "MultiQC reports") - - config = pipeline.configuration['fastqc'] - - raw_fastq_files_path = join(pipeline.output_path, 'ConvertJob') - - # Since amplicon jobs do not require human-filtering or adapter-trimming, - # QCJob is not used. Simulate QCJob's output directory for use as input - # into FastQCJob. - projects = pipeline.get_project_info() - projects = [x['project_name'] for x in projects] - - for project_name in projects: - # copy the files from ConvertJob output to faked QCJob output folder. - # $WKDIR/$RUN_ID/QCJob/$PROJ_NAME/amplicon - faked_output_folder = join(pipeline.output_path, 'QCJob', - project_name, 'amplicon') - makedirs(faked_output_folder) - - # get list of all raw output files to be copied. - job_output = [join(raw_fastq_files_path, x) for x in - listdir(raw_fastq_files_path)] - job_output = [x for x in job_output if isfile(x)] - job_output = [x for x in job_output if x.endswith('fastq.gz')] - # Undetermined files are very small and should be filtered from - # results. - job_output = [x for x in job_output if - not basename(x).startswith('Undetermined')] - - # copy the file - for fastq_file in job_output: - new_path = join(faked_output_folder, basename(fastq_file)) - shutil.copyfile(fastq_file, new_path) - - # FastQC expects the ConvertJob output to also be organized by - # project. Since this would entail running the same ConvertJob - # multiple times on the same input with just a name-change in - # the dummy sample-sheet, we instead perform ConvertJob once - # and copy the output from ConvertJob's output folder into - # ConvertJob's output folder/project1, project2 ... projectN. - faked_output_folder = join(raw_fastq_files_path, project_name) - makedirs(faked_output_folder) - job_output = [join(raw_fastq_files_path, x) for x in - listdir(raw_fastq_files_path)] - job_output = [x for x in job_output if isfile(x)] - job_output = [x for x in job_output if x.endswith('fastq.gz')] - job_output = [x for x in job_output if - not basename(x).startswith('Undetermined')] - - for raw_fastq_file in job_output: - new_path = join(faked_output_folder, basename(raw_fastq_file)) - shutil.copyfile(raw_fastq_file, new_path) - - # Run FastQCJob on faked directories - processed_fastq_files_path = join(pipeline.output_path, 'QCJob') - - fastqc_job = FastQCJob(pipeline.run_dir, - pipeline.output_path, - raw_fastq_files_path, - processed_fastq_files_path, - config['nprocs'], - config['nthreads'], - config['fastqc_executable_path'], - config['modules_to_load'], - job_id, - config['queue'], - config['nodes'], - config['wallclock_time_in_hours'], - config['job_total_memory_limit'], - job_pool_size, - config['multiqc_config_file_path'], - config['job_max_array_length'], - True) - - if not skip_exec: - fastqc_job.run(callback=status_line.update_job_step) - - status_line.update_current_message("Step 4 of 5: Generating Prep " - "Information Files") - - config = pipeline.configuration['seqpro'] - # until seqpro_mf is merged into seqpro, modify seqpro_path to - # reference the former rather than the latter. - seqpro_path = config['seqpro_path'].replace('seqpro', 'seqpro_mf') - project_list = fastqc_job.project_names - gpf_job = GenPrepFileJob( - pipeline.run_dir, - raw_fastq_files_path, - processed_fastq_files_path, - pipeline.output_path, - mapping_file_path, - seqpro_path, - project_list, - config['modules_to_load'], - job_id, - is_amplicon=True) - - touched_studies_prep_info = defaultdict(list) - - if not skip_exec: - gpf_job.run(callback=status_line.update_job_step) - - # concatenate the lists of paths across all study_ids into a single - # list. Replace sample-names w/tube-ids in all relevant prep-files. - preps = list(chain.from_iterable(gpf_job.prep_file_paths.values())) - map_sample_names_to_tube_ids(preps, sn_tid_map_by_project) - - # if seq_pro is run, prep_file_paths will be populated by run(). - - add_sif_info = [] - - qid_pn_map = {x['qiita_id']: x['project_name'] for - x in pipeline.get_project_info()} - - # in case we really do need to query for samples again: - # assume set of valid study_ids can be determined from prep_file_paths. - for study_id in gpf_job.prep_file_paths: - url = f'/api/v1/study/{study_id}/samples' - samples = list(qclient.get(url)) - # generate a list of (sample-name, project-name) pairs. - project_name = qid_pn_map[study_id] - samples = [(x, project_name) for x in samples] - add_sif_info.append(pd.DataFrame(data=samples, - columns=['sample_name', - 'project_name'])) - - # convert the list of dataframes into a single dataframe. - add_sif_info = pd.concat(add_sif_info, - ignore_index=True).drop_duplicates() - - # generate SIF files with add_sif_info as additional metadata input. - # duplicate sample-names and non-blanks will be handled properly. - sifs = pipeline.generate_sample_info_files(add_sif_info) - - update_blanks_in_qiita(sifs, qclient) - - for study_id in gpf_job.prep_file_paths: - for prep_file_path in gpf_job.prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) - - # determine data_type based on target_gene column. - target_gene = metadata[list(metadata.keys())[0]]['target_gene'] - for key in {'16S', '18S', 'ITS'}: - if key in target_gene: - data_type = key - break - - data = {'prep_info': dumps(metadata), - 'study': study_id, - 'data_type': data_type} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - - touched_studies_prep_info[study_id].append(prep_id) - else: - # replace sample-names w/tube-ids in all relevant prep-files. - map_sample_names_to_tube_ids(join(pipeline.output_path, - 'GenPrepFileJob', 'PrepFiles', - ('230224_M05314_0347_000000000-KVMH3' - '.ABTX_20230227_11052.1.tsv')), - sn_tid_map_by_project) - - # assume testing conditions and assign preps to study 1. - metadata = { - 'SKB8.640193': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq'}, - 'SKD8.640184': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq'}} - - data = {'prep_info': dumps(metadata), - 'study': '1', - 'data_type': '16S'} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - touched_studies_prep_info['1'] = [prep_id] - - sifs = pipeline.generate_sample_info_files() - - status_line.update_current_message("Step 5 of 5: Copying results to " - "archive") - - cmds = [f'cd {out_dir}; tar zcvf logs-ConvertJob.tgz ConvertJob/logs', - f'cd {out_dir}; tar zcvf reports-ConvertJob.tgz ' - 'ConvertJob/Reports', - f'cd {out_dir}; tar zcvf logs-FastQCJob.tgz ' - 'FastQCJob/logs', - f'cd {out_dir}; tar zcvf reports-FastQCJob.tgz ' - 'FastQCJob/fastqc', - f'cd {out_dir}; tar zcvf logs-GenPrepFileJob.tgz ' - 'GenPrepFileJob/logs', - f'cd {out_dir}; tar zcvf prep-files.tgz ' - 'GenPrepFileJob/PrepFiles' - ] - - if sifs: - # just use the filenames for tarballing the sifs. - # the sifs should all be stored in the {out_dir} by default. - tmp = [basename(x) for x in sifs] - # convert sifs into a list of filenames. - tmp = ' '.join(tmp) - cmds.append(f'cd {out_dir}; tar zcvf sample-files.tgz {tmp}') - - csv_fps = [] - for root, dirs, files in walk(join(gpf_job.output_path, 'PrepFiles')): - for csv_file in files: - csv_fps.append(join(root, csv_file)) - - touched_studies = [] - - for project, upload_dir, qiita_id in special_map: - # sif filenames are of the form: - blanks_file = f'{run_identifier}_{project}_blanks.tsv' - if sifs and [x for x in sifs if blanks_file in x]: - # move uncompressed sifs to upload_dir. - cmds.append(f'cd {out_dir}; mv {blanks_file} {upload_dir}') - - # record that something is being moved into a Qiita Study. - # this will allow us to notify the user which Studies to - # review upon completion. - touched_studies.append((qiita_id, project)) - - # Note that even though QCJob was invoked, the output directories - # were faked and hence existing tested code is reused here. - if exists(f'{out_dir}/QCJob/{project}/filtered_sequences'): - cmds.append(f'cd {out_dir}; mv ' - f'QCJob/{project}/filtered_sequences/* ' - f'{upload_dir}') - elif exists(f'{out_dir}/QCJob/{project}/trimmed_sequences'): - cmds.append(f'cd {out_dir}; mv ' - f'QCJob/{project}/trimmed_sequences/* ' - f'{upload_dir}') - elif exists(f'{out_dir}/QCJob/{project}/amplicon'): - cmds.append(f'cd {out_dir}; mv ' - f'QCJob/{project}/amplicon/* ' - f'{upload_dir}') - else: - raise PipelineError("QCJob output not in expected location") - - for csv_file in csv_fps: - if project in csv_file: - cmds.append(f'cd {out_dir}; mv {csv_file} {upload_dir}') - break - - # create a set of unique study-ids that were touched by the Pipeline - # and return this information to the user. - touched_studies = sorted(list(set(touched_studies))) - - data = [] - for qiita_id, project in touched_studies: - for prep_id in touched_studies_prep_info[qiita_id]: - study_url = f'{qclient._server_url}/study/description/{qiita_id}' - prep_url = (f'{qclient._server_url}/study/description/' - f'{qiita_id}?prep_id={prep_id}') - data.append({'Project': project, 'Qiita Study ID': qiita_id, - 'Qiita Prep ID': prep_id, 'Qiita URL': study_url, - 'Prep URL': prep_url}) - - df = pd.DataFrame(data) - - with open(join(out_dir, 'touched_studies.html'), 'w') as f: - f.write(df.to_html(border=2, index=False, justify="left", - render_links=True, escape=False)) - - # copy all tgz files, including sample-files.tgz, to final_results. - cmds.append(f'cd {out_dir}; mv *.tgz final_results') - cmds.append(f'cd {out_dir}; mv FastQCJob/multiqc final_results') - - if exists(join(out_dir, 'touched_studies.html')): - cmds.append(f'cd {out_dir}; mv touched_studies.html final_results') - - if exists(join(out_dir, 'failed_samples.html')): - cmds.append(f'cd {out_dir}; mv failed_samples.html final_results') - - # allow the writing of commands out to cmds.log, even if skip_exec - # is True. This allows for unit-testing of cmds generation. - cmd_log_fp = join(out_dir, 'cmds.log') - with open(cmd_log_fp, 'w') as cmd_log_f: - for cmd in cmds: - cmd_log_f.write(f'{cmd}\n') - - for cmd in cmds: - p = Popen(cmd, universal_newlines=True, shell=True, - stdout=PIPE, stderr=PIPE) - std_out, std_err = p.communicate() - return_code = p.returncode - - if return_code != 0 and not skip_exec: - # during testing, ignore processes that fail and continue - # to test other commands. - raise PipelineError(f"'{cmd}' returned {return_code}") - - return [ArtifactInfo('output', 'job-output-folder', - [(f'{final_results_path}/', 'directory')])] diff --git a/qp_klp/process_metagenomics_job.py b/qp_klp/process_metagenomics_job.py deleted file mode 100644 index 2c1ea01e..00000000 --- a/qp_klp/process_metagenomics_job.py +++ /dev/null @@ -1,437 +0,0 @@ -from os import walk -from os import makedirs -from os.path import basename, join, exists -from qiita_client import ArtifactInfo -from sequence_processing_pipeline.ConvertJob import ConvertJob -from sequence_processing_pipeline.FastQCJob import FastQCJob -from sequence_processing_pipeline.GenPrepFileJob import GenPrepFileJob -from sequence_processing_pipeline.Pipeline import Pipeline -from sequence_processing_pipeline.PipelineError import PipelineError -from sequence_processing_pipeline.QCJob import QCJob -from subprocess import Popen, PIPE -from metapool import KLSampleSheet -from metapool.sample_sheet import sample_sheet_to_dataframe -from metapool.prep import remove_qiita_id -from random import sample as rsampl -import pandas as pd -from qp_klp.klp_util import (map_sample_names_to_tube_ids, FailedSamplesRecord, - update_blanks_in_qiita, parse_prep_file) -from json import dumps -from itertools import chain -from collections import defaultdict - - -def process_metagenomics(sample_sheet_path, lane_number, qclient, - run_identifier, out_dir, job_id, skip_exec, - job_pool_size, final_results_path, config_fp, - status_line): - - # open new file as a KLSampleSheet - # use KLSampleSheet functionality to add/overwrite lane number. - sheet = KLSampleSheet(sample_sheet_path) - for sample in sheet: - sample['Lane'] = f'{lane_number}' - - assay_type = sheet.Header.Assay - - sheet_df = sample_sheet_to_dataframe(sheet) - errors = [] - sn_tid_map_by_project = {} - for project, _df in sheet_df.groupby('sample_project'): - project_name = remove_qiita_id(project) - qiita_id = project.replace(f'{project_name}_', '') - qurl = f'/api/v1/study/{qiita_id}/samples' - - sheet_samples = { - s for s in _df['sample_name'] if not s.startswith('BLANK')} - qsam = { - s.replace(f'{qiita_id}.', '') for s in qclient.get(qurl)} - sample_name_diff = sheet_samples - qsam - sn_tid_map_by_project[project_name] = None - - # check that tube_id is defined in the Qiita study. If so, - # then any sample_names missing from the sample-sheet may simply - # have a leading zero present. - tube_id_present = 'tube_id' in qclient.get(f'{qurl}/info')[ - 'categories'] - - if sample_name_diff: - # before we report as an error, check tube_id - error_tube_id = 'No tube_id column in Qiita.' - - if tube_id_present: - # strip any leading zeroes from the sample-ids. Note that - # if a sample-id has more than one leading zero, all of - # them will be removed. - sheet_samples = {x.lstrip('0') for x in sheet_samples} - # once any leading zeros have been removed, recalculate - # sample_name_diff before continuing processing. - sample_name_diff = sheet_samples - qsam - - tids = qclient.get(f'{qurl}/categories=tube_id')['samples'] - # generate a map of sample_names to tube_ids for - # GenPrepFileJob. - sn_tid_map_by_project[project_name] = { - y[0]: x.replace(f'{qiita_id}.', '') for x, y in - tids.items()} - tids = set(sn_tid_map_by_project[project_name].keys()) - tube_id_diff = sheet_samples - tids - if not tube_id_diff: - continue - len_tube_id_overlap = len(tube_id_diff) - tidsx = ', '.join(tids if len(tids) < 6 else rsampl(tids, k=5)) - - error_tube_id = ( - f'tube_id in Qiita but {len_tube_id_overlap} missing ' - f'samples. Some samples from tube_id: {tidsx}.') - - len_overlap = len(sample_name_diff) - # selecting at random k=5 samples to minimize space in display - samx = ', '.join(qsam if len(qsam) < 6 else rsampl(qsam, k=5)) - - # selecting the up to 4 first samples to minimize space in - # display - missing = ', '.join(sorted(sample_name_diff)[:4]) - errors.append( - f'{project} has {len_overlap} missing samples (i.e. ' - f'{missing}). Some samples from Qiita: {samx}. ' - f'{error_tube_id}') - - if errors: - raise PipelineError('\n'.join(errors)) - - with open(sample_sheet_path, 'w') as f: - sheet.write(f) - - # Create a Pipeline object - try: - pipeline = Pipeline(config_fp, run_identifier, sample_sheet_path, - None, out_dir, job_id) - - except PipelineError as e: - # Pipeline is the object that finds the input fp, based on - # a search directory set in configuration.json and a run_id. - if str(e).endswith("could not be found"): - msg = f"A path for {run_identifier} could not be found." - raise PipelineError(msg) - elif str(e).startswith("Sample-sheet has the following errors:"): - status_line.update_current_message(str(e)) - raise ValueError(str(e)) - else: - raise e - - # if an Error has not been raised, assume there are no errors - # in the sample-sheet. A successfully-created Pipeline object can - # still contain a list of warnings about sample-sheet validation. - # If any warnings are present, they should be reported to the user. - if pipeline.warnings: - msg = '\n'.join(pipeline.warnings) - status_line.update_current_message('Sample-sheet has been flagged with' - f' the following warnings: {msg}') - - # get a list of unique sample ids from the sample-sheet. - # comparing them against the list of samples found in the results - # of each stage of the pipeline will let us know when and where - # samples failed to process. - samples = pipeline.get_sample_ids() - - fsr = FailedSamplesRecord(out_dir, pipeline.sample_sheet.samples) - - # find the uploads directory all trimmed files will need to be - # moved to. - results = qclient.get("/qiita_db/artifacts/types/") - - # trimmed files are stored by qiita_id. Find the qiita_id - # associated with each project and ensure a subdirectory exists - # for when it comes time to move the trimmed files. - special_map = [] - for project in pipeline.get_project_info(): - upload_path = join(results['uploads'], project['qiita_id']) - makedirs(upload_path, exist_ok=True) - special_map.append((project['project_name'], upload_path, - project['qiita_id'])) - - status_line.update_current_message("Step 2 of 6: Converting BCL to fastq") - - config = pipeline.configuration['bcl-convert'] - convert_job = ConvertJob(pipeline.run_dir, - pipeline.output_path, - sample_sheet_path, - config['queue'], - config['nodes'], - config['nprocs'], - config['wallclock_time_in_hours'], - config['per_process_memory_limit'], - config['executable_path'], - config['modules_to_load'], - job_id) - - # if skip_execution is True, then each Pipeline object will be - # initialized, their assertions tested, and an ainfo will be - # returned to the caller. However the Jobs will not actually - # be executed. This is useful for testing. - if not skip_exec: - convert_job.run(callback=status_line.update_job_step) - fsr.write(convert_job.audit(samples), 'ConvertJob') - - status_line.update_current_message("Step 3 of 6: Adaptor & Host " - "[optional] trimming") - - raw_fastq_files_path = join(pipeline.output_path, 'ConvertJob') - - config = pipeline.configuration['qc'] - qc_job = QCJob(raw_fastq_files_path, - pipeline.output_path, - sample_sheet_path, - config['minimap_databases'], - config['kraken2_database'], - config['queue'], - config['nodes'], - config['nprocs'], - config['wallclock_time_in_hours'], - config['job_total_memory_limit'], - config['fastp_executable_path'], - config['minimap2_executable_path'], - config['samtools_executable_path'], - config['modules_to_load'], - job_id, - job_pool_size, - config['job_max_array_length']) - - if not skip_exec: - qc_job.run(callback=status_line.update_job_step) - fsr.write(qc_job.audit(samples), 'QCJob') - - status_line.update_current_message("Step 4 of 6: Generating FastQC & " - "MultiQC reports") - - config = pipeline.configuration['fastqc'] - - raw_fastq_files_path = join(pipeline.output_path, 'ConvertJob') - processed_fastq_files_path = join(pipeline.output_path, 'QCJob') - - fastqc_job = FastQCJob(pipeline.run_dir, - pipeline.output_path, - raw_fastq_files_path, - processed_fastq_files_path, - config['nprocs'], - config['nthreads'], - config['fastqc_executable_path'], - config['modules_to_load'], - job_id, - config['queue'], - config['nodes'], - config['wallclock_time_in_hours'], - config['job_total_memory_limit'], - job_pool_size, - config['multiqc_config_file_path'], - config['job_max_array_length'], - False) - - if not skip_exec: - fastqc_job.run(callback=status_line.update_job_step) - fsr.write(fastqc_job.audit(samples), 'FastQCJob') - - project_list = fastqc_job.project_names - - status_line.update_current_message("Step 5 of 6: Generating Prep " - "Information Files") - - config = pipeline.configuration['seqpro'] - gpf_job = GenPrepFileJob( - pipeline.run_dir, - raw_fastq_files_path, - processed_fastq_files_path, - pipeline.output_path, - sample_sheet_path, - config['seqpro_path'], - project_list, - config['modules_to_load'], - job_id) - - touched_studies_prep_info = defaultdict(list) - - if not skip_exec: - gpf_job.run(callback=status_line.update_job_step) - - # concatenate the lists of paths across all study_ids into a single - # list. Replace sample-names w/tube-ids in all relevant prep-files. - preps = list(chain.from_iterable(gpf_job.prep_file_paths.values())) - map_sample_names_to_tube_ids(preps, sn_tid_map_by_project) - - add_sif_info = [] - - qid_pn_map = {x['qiita_id']: x['project_name'] for - x in pipeline.get_project_info()} - - for study_id in gpf_job.prep_file_paths: - url = f'/api/v1/study/{study_id}/samples' - samples = list(qclient.get(url)) - # generate a list of (sample-name, project-name) pairs. - project_name = qid_pn_map[study_id] - samples = [(x, project_name) for x in samples] - add_sif_info.append(pd.DataFrame(data=samples, - columns=['sample_name', - 'project_name'])) - - # convert the list of dataframes into a single dataframe. - add_sif_info = pd.concat(add_sif_info, - ignore_index=True).drop_duplicates() - - # generate SIF files with add_sif_info as additional metadata input. - # duplicate sample-names and non-blanks will be handled properly. - sifs = pipeline.generate_sample_info_files(add_sif_info) - - update_blanks_in_qiita(sifs, qclient) - - for study_id in gpf_job.prep_file_paths: - for prep_file_path in gpf_job.prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) - # determine data_type based on sample-sheet - # value will be from the Assay field - data = {'prep_info': dumps(metadata), - 'study': study_id, - 'data_type': assay_type} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - - touched_studies_prep_info[study_id].append(prep_id) - - else: - # replace sample-names w/tube-ids in all relevant prep-files. - map_sample_names_to_tube_ids(join(pipeline.output_path, - 'GenPrepFileJob', 'PrepFiles', - ('good-prep-file.txt')), - sn_tid_map_by_project) - - # assume testing conditions and assign preps to study 1. - metadata = { - 'SKB8.640193': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq'}, - 'SKD8.640184': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq'}} - - data = {'prep_info': dumps(metadata), - 'study': '1', - 'data_type': 'Metagenomic'} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - touched_studies_prep_info['1'] = [prep_id] - - sifs = pipeline.generate_sample_info_files() - - status_line.update_current_message("Step 6 of 6: Copying results to " - "archive") - - cmds = [f'cd {out_dir}; tar zcvf logs-ConvertJob.tgz ConvertJob/logs', - f'cd {out_dir}; tar zcvf reports-ConvertJob.tgz ' - 'ConvertJob/Reports ConvertJob/Logs', - f'cd {out_dir}; tar zcvf logs-QCJob.tgz QCJob/logs', - f'cd {out_dir}; tar zcvf logs-FastQCJob.tgz ' - 'FastQCJob/logs', - f'cd {out_dir}; tar zcvf reports-FastQCJob.tgz ' - 'FastQCJob/fastqc', - f'cd {out_dir}; tar zcvf logs-GenPrepFileJob.tgz ' - 'GenPrepFileJob/logs', - f'cd {out_dir}; tar zcvf prep-files.tgz ' - 'GenPrepFileJob/PrepFiles'] - - if sifs: - # just use the filenames for tarballing the sifs. - # the sifs should all be stored in the {out_dir} by default. - tmp = [basename(x) for x in sifs] - # convert sifs into a list of filenames. - tmp = ' '.join(tmp) - cmds.append(f'cd {out_dir}; tar zcvf sample-files.tgz {tmp}') - - csv_fps = [] - for root, dirs, files in walk(join(gpf_job.output_path, 'PrepFiles')): - for csv_file in files: - csv_fps.append(join(root, csv_file)) - - touched_studies = [] - - for project, upload_dir, qiita_id in special_map: - # sif filenames are of the form: - blanks_file = f'{run_identifier}_{project}_blanks.tsv' - if sifs and [x for x in sifs if blanks_file in x]: - # move uncompressed sifs to upload_dir. - cmds.append(f'cd {out_dir}; mv {blanks_file} {upload_dir}') - - # record that something is being moved into a Qiita Study. - # this will allow us to notify the user which Studies to - # review upon completion. - touched_studies.append((qiita_id, project)) - - cmds.append(f'cd {out_dir}; tar zcvf reports-QCJob.tgz ' - f'QCJob/{project}/fastp_reports_dir') - - if exists(f'{out_dir}/QCJob/{project}/filtered_sequences'): - cmds.append(f'cd {out_dir}; mv ' - f'QCJob/{project}/filtered_sequences/* ' - f'{upload_dir}') - else: - cmds.append(f'cd {out_dir}; mv ' - f'QCJob/{project}/trimmed_sequences/* ' - f'{upload_dir}') - - for csv_file in csv_fps: - if project in csv_file: - cmds.append(f'cd {out_dir}; mv {csv_file} {upload_dir}') - break - - # create a set of unique study-ids that were touched by the Pipeline - # and return this information to the user. - touched_studies = sorted(list(set(touched_studies))) - - data = [] - for qiita_id, project in touched_studies: - for prep_id in touched_studies_prep_info[qiita_id]: - study_url = f'{qclient._server_url}/study/description/{qiita_id}' - prep_url = (f'{qclient._server_url}/study/description/' - f'{qiita_id}?prep_id={prep_id}') - data.append({'Project': project, 'Qiita Study ID': qiita_id, - 'Qiita Prep ID': prep_id, 'Qiita URL': study_url, - 'Prep URL': prep_url}) - - df = pd.DataFrame(data) - - with open(join(out_dir, 'touched_studies.html'), 'w') as f: - f.write(df.to_html(border=2, index=False, justify="left", - render_links=True, escape=False)) - - # copy all tgz files, including sample-files.tgz, to final_results. - cmds.append(f'cd {out_dir}; mv *.tgz final_results') - cmds.append(f'cd {out_dir}; mv FastQCJob/multiqc final_results') - - if exists(join(out_dir, 'touched_studies.html')): - cmds.append(f'cd {out_dir}; mv touched_studies.html final_results') - - if exists(join(out_dir, 'failed_samples.html')): - cmds.append(f'cd {out_dir}; mv failed_samples.html final_results') - - # allow the writing of commands out to cmds.log, even if skip_exec - # is True. This allows for unit-testing of cmds generation. - cmd_log_fp = join(out_dir, 'cmds.log') - with open(cmd_log_fp, 'w') as cmd_log_f: - for cmd in cmds: - cmd_log_f.write(f'{cmd}\n') - - for cmd in cmds: - p = Popen(cmd, universal_newlines=True, shell=True, - stdout=PIPE, stderr=PIPE) - std_out, std_err = p.communicate() - return_code = p.returncode - if return_code != 0 and not skip_exec: - # during testing, ignore processes that fail and continue - # to test other commands. - raise PipelineError(f"'{cmd}' returned {return_code}") - - return [ArtifactInfo('output', 'job-output-folder', - [(f'{final_results_path}/', 'directory')])] From d287bdbc27c057736dcfc2278beaf11c6631e7ad Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 15 May 2023 20:51:45 -0700 Subject: [PATCH 02/35] Forgot to add new Step files to DRY refactor. Some Additional modifications added. --- qp_klp/AmpliconStep.py | 98 ++++++++++++ qp_klp/MetagenomicStep.py | 153 +++++++++++++++++++ qp_klp/Step.py | 181 ++++++++++++++++++++++ qp_klp/klp.py | 306 ++++++++++++++++++++++++++++++++++++-- qp_klp/klp_util.py | 263 -------------------------------- 5 files changed, 727 insertions(+), 274 deletions(-) create mode 100644 qp_klp/AmpliconStep.py create mode 100644 qp_klp/MetagenomicStep.py create mode 100644 qp_klp/Step.py delete mode 100644 qp_klp/klp_util.py diff --git a/qp_klp/AmpliconStep.py b/qp_klp/AmpliconStep.py new file mode 100644 index 00000000..fab6b7b7 --- /dev/null +++ b/qp_klp/AmpliconStep.py @@ -0,0 +1,98 @@ +from os import listdir, makedirs +from os.path import join, isfile, basename +from shutil import copyfile +from qp_klp.Step import Step + + +class AmpliconStep(Step): + def __init__(self, pipeline, master_qiita_job_id, status_update_callback, + sn_tid_map_by_project): + super().__init__(pipeline, + master_qiita_job_id, + status_update_callback, + sn_tid_map_by_project) + + def convert_bcl_to_fastq(self): + config = self.pipeline.configuration['bcl2fastq'] + # note that pipeline.sample_sheet in this case + # is the dummy sample-sheet created by Pipeline. + super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet) + + def quality_control(self): + # Quality control for Amplicon runs occurs downstream. + # Do not perform QC at this time. + + # Simulate QCJob's output directory for use as input into FastQCJob. + projects = self.pipeline.get_project_info() + projects = [x['project_name'] for x in projects] + + for project_name in projects: + # copy the files from ConvertJob output to faked QCJob output + # folder: $WKDIR/$RUN_ID/QCJob/$PROJ_NAME/amplicon + faked_output_folder = join(self.pipeline.output_path, + 'QCJob', + project_name, + 'amplicon') + + makedirs(faked_output_folder) + + raw_fastq_files_path = join(self.pipeline.output_path, + 'ConvertJob') + + # get list of all raw output files to be copied. + job_output = [join(raw_fastq_files_path, x) for x in + listdir(raw_fastq_files_path)] + job_output = [x for x in job_output if isfile(x)] + job_output = [x for x in job_output if x.endswith('fastq.gz')] + # Undetermined files are very small and should be filtered from + # results. + job_output = [x for x in job_output if + not basename(x).startswith('Undetermined')] + + # copy the file + for fastq_file in job_output: + new_path = join(faked_output_folder, basename(fastq_file)) + copyfile(fastq_file, new_path) + + # FastQC expects the ConvertJob output to also be organized by + # project. Since this would entail running the same ConvertJob + # multiple times on the same input with just a name-change in + # the dummy sample-sheet, we instead perform ConvertJob once + # and copy the output from ConvertJob's output folder into + # ConvertJob's output folder/project1, project2 ... projectN. + faked_output_folder = join(raw_fastq_files_path, project_name) + makedirs(faked_output_folder) + job_output = [join(raw_fastq_files_path, x) for x in + listdir(raw_fastq_files_path)] + job_output = [x for x in job_output if isfile(x)] + job_output = [x for x in job_output if x.endswith('fastq.gz')] + job_output = [x for x in job_output if + not basename(x).startswith('Undetermined')] + + for raw_fastq_file in job_output: + new_path = join(faked_output_folder, basename(raw_fastq_file)) + copyfile(raw_fastq_file, new_path) + + def generate_reports(self, config, input_file_path): + config = self.pipeline.configuration['fastqc'] + super()._generate_reports(config, self.pipeline.mapping_file) + + return None # amplicon doesn't need project names + + def generate_prep_file(self): + config = self.pipeline.configuration['seqpro'] + + seqpro_path = config['seqpro_path'].replace('seqpro', 'seqpro_mf') + + job = super()._generate_prep_file(config, + self.pipeline.mapping_file, + seqpro_path, + self.project_names) + + self.prep_file_paths = job.prep_file_paths + + def generate_commands(self): + super()._generate_commands() + self.cmds.append(f'cd {self.pipeline.output_path}; ' + 'tar zcvf reports-ConvertJob.tgz ConvertJob/Reports') + self.write_commands_to_output_path() diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py new file mode 100644 index 00000000..76738f63 --- /dev/null +++ b/qp_klp/MetagenomicStep.py @@ -0,0 +1,153 @@ +from os import walk +from os.path import exists, join, basename +from qp_klp.klp_util import FailedSamplesRecord +from sequence_processing_pipeline.PipelineError import PipelineError +import pandas as pd +from qp_klp.Step import Step + + +class MetagenomicStep(Step): + def __init__(self, pipeline, master_qiita_job_id, status_update_callback, + sn_tid_map_by_project): + super().__init__(pipeline, + master_qiita_job_id, + status_update_callback, + sn_tid_map_by_project) + + # Note: FailedSamplesRecord is not used when processing amplicon as the + # samples are processed as a single fastq file and hence that info + # is not available. + self.fsr = FailedSamplesRecord(self.pipeline.output_path, + pipeline.sample_sheet.samples) + self.project_names = None + + def convert_bcl_to_fastq(self): + config = self.pipeline.configuration['bcl-convert'] + job = super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet) + self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'ConvertJob') + + def quality_control(self): + config = self.pipeline.configuration['qc'] + job = super()._quality_control(config, self.pipeline.sample_sheet) + self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'QCJob') + + def generate_reports(self): + config = self.pipeline.configuration['fastqc'] + job = super()._generate_reports(config, self.pipeline.sample_sheet) + self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'FastQCJob') + + self.project_names = job.project_names + + def generate_prep_file(self): + config = self.pipeline.configuration['seqpro'] + + if self.project_names is None: + raise ValueError("reports not yet generated") + + job = super()._generate_prep_file(config, + self.pipeline.sample_sheet, + config['seqpro_path'], + self.project_names) + + self.prep_file_paths = job.prep_file_paths + + def generate_commands(self, special_map, server_url, + touched_studies_prep_info): + super()._generate_commands() + + out_dir = self.pipeline.output_path + output_path = self.pipeline.output_path + + self.cmds.append(f'cd {self.pipeline.output_path}; ' + 'tar zcvf logs-QCJob.tgz QCJob/logs') + + self.cmds.append(f'cd {self.pipeline.output_path}; ' + 'tar zcvf reports-ConvertJob.tgz ConvertJob/Reports ' + 'ConvertJob/Logs') + + self.write_commands_to_output_path() + + if self.sifs: + # just use the filenames for tarballing the sifs. + # the sifs should all be stored in the {out_dir} by default. + tmp = [basename(x) for x in self.sifs] + # convert sifs into a list of filenames. + tmp = ' '.join(tmp) + self.cmds.append(f'cd {out_dir}; tar zcvf sample-files.tgz {tmp}') + + csv_fps = [] + for root, dirs, files in walk(join(output_path, 'PrepFiles')): + for csv_file in files: + csv_fps.append(join(root, csv_file)) + + touched_studies = [] + + for project, upload_dir, qiita_id in special_map: + # sif filenames are of the form: + blanks_file = f'{self.pipeline.run_id}_{project}_blanks.tsv' + if self.sifs and [x for x in self.sifs if blanks_file in x]: + # move uncompressed sifs to upload_dir. + tmp = f'cd {out_dir}; mv {blanks_file} {upload_dir}' + self.cmds.append(tmp) + + # record that something is being moved into a Qiita Study. + # this will allow us to notify the user which Studies to + # review upon completion. + touched_studies.append((qiita_id, project)) + + if self.pipeline.type == 'metagenomic': + self.cmds.append(f'cd {out_dir}; tar zcvf reports-QCJob.tgz ' + f'QCJob/{project}/fastp_reports_dir') + + if exists(f'{out_dir}/QCJob/{project}/filtered_sequences'): + self.cmds.append(f'cd {out_dir}; mv ' + f'QCJob/{project}/filtered_sequences/* ' + f'{upload_dir}') + elif exists(f'{out_dir}/QCJob/{project}/trimmed_sequences'): + self.cmds.append(f'cd {out_dir}; mv ' + f'QCJob/{project}/trimmed_sequences/* ' + f'{upload_dir}') + elif exists(f'{out_dir}/QCJob/{project}/amplicon'): + self.cmds.append(f'cd {out_dir}; mv ' + f'QCJob/{project}/amplicon/* ' + f'{upload_dir}') + else: + raise PipelineError("QCJob output not in expected location") + + for csv_file in csv_fps: + if project in csv_file: + tmp = f'cd {out_dir}; mv {csv_file} {upload_dir}' + self.cmds.append(tmp) + break + + # create a set of unique study-ids that were touched by the Pipeline + # and return this information to the user. + touched_studies = sorted(list(set(touched_studies))) + + data = [] + for qiita_id, project in touched_studies: + for prep_id in touched_studies_prep_info[qiita_id]: + study_url = f'{server_url}/study/description/{qiita_id}' + prep_url = (f'{server_url}/study/description/' + f'{qiita_id}?prep_id={prep_id}') + data.append({'Project': project, 'Qiita Study ID': qiita_id, + 'Qiita Prep ID': prep_id, 'Qiita URL': study_url, + 'Prep URL': prep_url}) + + df = pd.DataFrame(data) + + with open(join(out_dir, 'touched_studies.html'), 'w') as f: + f.write(df.to_html(border=2, index=False, justify="left", + render_links=True, escape=False)) + + # copy all tgz files, including sample-files.tgz, to final_results. + self.cmds.append(f'cd {out_dir}; mv *.tgz final_results') + self.cmds.append(f'cd {out_dir}; mv FastQCJob/multiqc final_results') + + if exists(join(out_dir, 'touched_studies.html')): + f'cd {out_dir}; mv touched_studies.html final_results' + self.cmds.append(tmp) + + if exists(join(out_dir, 'failed_samples.html')): + tmp = f'cd {out_dir}; mv failed_samples.html final_results' + self.cmds.append(tmp) diff --git a/qp_klp/Step.py b/qp_klp/Step.py new file mode 100644 index 00000000..b09d5b0d --- /dev/null +++ b/qp_klp/Step.py @@ -0,0 +1,181 @@ +from itertools import chain +from os.path import join +from qp_klp.klp_util import map_sample_names_to_tube_ids +from sequence_processing_pipeline.ConvertJob import ConvertJob +from sequence_processing_pipeline.FastQCJob import FastQCJob +from sequence_processing_pipeline.GenPrepFileJob import GenPrepFileJob +from sequence_processing_pipeline.PipelineError import PipelineError +from sequence_processing_pipeline.QCJob import QCJob +from subprocess import Popen, PIPE +import pandas as pd + + +class Step: + ''' + The base Step class wraps the creation and running of the Job classes + that are common to both Amplicon and Metagenomic Pipeline. Functionality + specific to one pipeline or the other is handled in the appropriate + subclass and makes calls to this base class as needed. In this way the + codebase is kept DRY. + ''' + def __init__(self, pipeline, master_qiita_job_id, status_update_callback, + sn_tid_map_by_project): + self.pipeline = pipeline + self.master_qiita_job_id = master_qiita_job_id + self.status_update_callback = status_update_callback + # for now, hardcode this at the legacy value, since we've never + # changed it. + self.job_pool_size = 30 + self.project_names = None + self.cmds = None + self.cmds_log_path = None + self.sn_tid_map_by_project = sn_tid_map_by_project + self.prep_file_paths = None + self.sifs = None + + def _convert_bcl_to_fastq(self, config, input_file_path): + convert_job = ConvertJob(self.pipeline.run_dir, + self.pipeline.output_path, + input_file_path, + config['queue'], + config['nodes'], + config['nprocs'], + config['wallclock_time_in_hours'], + config['per_process_memory_limit'], + config['executable_path'], + config['modules_to_load'], + self.master_qiita_job_id) + + convert_job.run(callback=self.status_update_callback.update_job_status) + + return convert_job + + def _quality_control(self, config, input_file_path): + qc_job = QCJob(join(self.pipeline.output_path, 'ConvertJob'), + self.pipeline.output_path, + input_file_path, + config['minimap_databases'], + config['kraken2_database'], + config['queue'], + config['nodes'], + config['nprocs'], + config['wallclock_time_in_hours'], + config['job_total_memory_limit'], + config['fastp_executable_path'], + config['minimap2_executable_path'], + config['samtools_executable_path'], + config['modules_to_load'], + self.master_qiita_job_id, + self.job_pool_size, + config['job_max_array_length']) + + qc_job.run(callback=self.status_update_callback.update_job_status) + + return qc_job + + def _generate_reports(self, config, input_file_path): + fastqc_job = FastQCJob(self.pipeline.run_dir, + self.pipeline.output_path, + join(self.pipeline.output_path, 'ConvertJob'), + join(self.pipeline.output_path, 'QCJob'), + config['nprocs'], + config['nthreads'], + config['fastqc_executable_path'], + config['modules_to_load'], + self.master_qiita_job_id, + config['queue'], + config['nodes'], + config['wallclock_time_in_hours'], + config['job_total_memory_limit'], + self.job_pool_size, + config['multiqc_config_file_path'], + config['job_max_array_length'], + self.pipeline.type == 'amplicon') + + fastqc_job.run(callback=self.status_update_callback.update_job_status) + + return fastqc_job + + def _generate_prep_file(self, config, input_file_path, seqpro_path, + project_names): + is_amplicon = self.pipeline.type == 'amplicon' + + gpf_job = GenPrepFileJob( + self.pipeline.run_dir, + join(self.pipeline.output_path, 'ConvertJob'), + join(self.pipeline.output_path, 'QCJob'), + self.pipeline.output_path, + input_file_path, + seqpro_path, + project_names, + config['modules_to_load'], + self.master_qiita_job_id, + is_amplicon=is_amplicon) + + gpf_job.run(callback=self.status_update_callback.update_job_status) + + # concatenate the lists of paths across all study_ids into a single + # list. Replace sample-names w/tube-ids in all relevant prep-files. + preps = list(chain.from_iterable(gpf_job.prep_file_paths.values())) + map_sample_names_to_tube_ids(preps, self.sn_tid_map_by_project) + + return gpf_job + + def _generate_commands(self): + cmds = ['tar zcvf logs-ConvertJob.tgz ConvertJob/logs', + 'tar zcvf logs-FastQCJob.tgz FastQCJob/logs', + 'tar zcvf reports-FastQCJob.tgz FastQCJob/fastqc', + 'tar zcvf logs-GenPrepFileJob.tgz GenPrepFileJob/logs', + 'tar zcvf prep-files.tgz GenPrepFileJob/PrepFiles'] + self.cmds = [f'cd {self.pipeline.output_path}; {x}' for x in cmds] + + def write_commands_to_output_path(self): + self.cmds_log_path = join(self.pipeline.output_path, 'cmds.log') + with open(self.cmds_log_path, 'w') as f: + for cmd in self.cmds: + f.write(f'{cmd}\n') + + def execute_commands(self): + # execute the list of commands in order + for cmd in self.cmds: + p = Popen(cmd, universal_newlines=True, shell=True, + stdout=PIPE, stderr=PIPE) + std_out, std_err = p.communicate() + return_code = p.returncode + + if return_code != 0: + # during testing, ignore processes that fail and continue + # to test other commands. + raise PipelineError(f"'{cmd}' returned {return_code}") + + def generate_sifs(self, from_qiita): + add_sif_info = [] + + qid_pn_map = {x['qiita_id']: x['project_name'] for + x in self.pipeline.get_project_info()} + + # in case we really do need to query for samples again: + # assume set of valid study_ids can be determined from prep_file_paths. + for study_id in from_qiita: + samples = from_qiita[study_id] + # generate a list of (sample-name, project-name) pairs. + project_name = qid_pn_map[study_id] + samples = [(x, project_name) for x in samples] + add_sif_info.append(pd.DataFrame(data=samples, + columns=['sample_name', + 'project_name'])) + + # convert the list of dataframes into a single dataframe. + add_sif_info = pd.concat(add_sif_info, + ignore_index=True).drop_duplicates() + + # generate SIF files with add_sif_info as additional metadata input. + # duplicate sample-names and non-blanks will be handled properly. + sifs = self.pipeline.generate_sample_info_files(add_sif_info) + + self.sifs = sifs + + return sifs + + def get_prep_file_paths(self): + return self.prep_file_paths diff --git a/qp_klp/klp.py b/qp_klp/klp.py index 313b264d..fbb6a4b9 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -7,23 +7,282 @@ # ----------------------------------------------------------------------------- from functools import partial from os import environ -from qp_klp.klp_util import StatusUpdate -from os import makedirs -from os.path import join from qiita_client import ArtifactInfo -from qp_klp.klp_util import (update_blanks_in_qiita, generate_special_map, - generate_pipeline, update_prep_templates, - get_registered_samples_in_qiita) from random import sample as rsampl -from sequence_processing_pipeline.Pipeline import Pipeline -from sequence_processing_pipeline.PipelineError import PipelineError from qp_klp.AmpliconStep import AmpliconStep from qp_klp.MetagenomicStep import MetagenomicStep +import pandas as pd +from json import dumps +from metapool import KLSampleSheet +from os import makedirs +from os.path import join +from sequence_processing_pipeline.Pipeline import Pipeline +from sequence_processing_pipeline.PipelineError import PipelineError +from collections import defaultdict CONFIG_FP = environ["QP_KLP_CONFIG_FP"] +def update_blanks_in_qiita(sifs, qclient): + for sif_path in sifs: + # get study_id from sif_file_name ...something_14385_blanks.tsv + study_id = sif_path.split('_')[-2] + + df = pd.read_csv(sif_path, delimiter='\t', dtype=str) + + # Prepend study_id to make them compatible w/list from Qiita. + df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) + + # SIFs only contain BLANKs. Get the list of potentially new BLANKs. + blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] + blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] + if len(blanks) == 0: + # we have nothing to do so let's return early + return + + # Get list of BLANKs already registered in Qiita. + from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') + from_qiita = [x for x in from_qiita if + x.startswith(f'{study_id}.BLANK')] + + # Generate list of BLANKs that need to be ADDED to Qiita. + new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) + + if len(new_blanks): + # Generate dummy entries for each new BLANK, if any. + categories = qclient.get(f'/api/v1/study/{study_id}/samples/' + 'info')['categories'] + + # initialize payload w/required dummy categories + data = {i: {c: 1 for c in categories} for i in new_blanks} + + # populate payload w/additional columns and/or overwrite existing + # columns w/metadata from SIF file. + sif_data = df.set_index('sample_name').T.to_dict() + for new_blank in new_blanks: + for column in sif_data[new_blank]: + data[new_blank][column] = sif_data[new_blank][column] + + # http_patch will raise Error if insert failed. + qclient.http_patch(f'/api/v1/study/{study_id}/samples', + data=dumps(data)) + + return data + + +def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): + for proj in sn_tid_map_by_proj: + if sn_tid_map_by_proj[proj] is not None: + # this project has tube-ids registered in Qiita. + # find the prep-file associated with this project. + for prep_file in prep_info_file_paths: + # not the best check but good enough for now. + if proj in prep_file: + df = pd.read_csv(prep_file, sep='\t', + dtype=str, index_col=False) + # save a copy of sample_name column as 'old_sample_name' + df['old_sample_name'] = df['sample_name'] + for i in df.index: + smpl_name = df.at[i, "sample_name"] + if not smpl_name.startswith('BLANK'): + # remove any leading zeroes if they exist + smpl_name = smpl_name.lstrip('0') + if smpl_name in sn_tid_map_by_proj[proj]: + tube_id = sn_tid_map_by_proj[proj][smpl_name] + df.at[i, "sample_name"] = tube_id + df.to_csv(prep_file, index=False, sep="\t") + + +class StatusUpdate(): + def __init__(self, qclient, job_id, step_count): + self.qclient = qclient + self.job_id = job_id + self.msg = '' + self.current_step = 0 + self.step_count = step_count + + def update_job_status(self, status, id): + # internal function implements a callback function for Pipeline.run(). + # :param id: PBS/Torque/or some other informative and current job id. + # :param status: status message + self.qclient.update_job_step(self.job_id, + self.msg + f" ({id}: {status})") + + def update_current_message(self, msg, include_step=True): + # internal function that sets current_message to the new value before + # updating the job step in the UI. + if include_step: + self.current_step += 1 + self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" + else: + self.msg = msg + + self.qclient.update_job_step(self.job_id, self.msg) + + +class FailedSamplesRecord: + def __init__(self, output_dir, samples): + # because we want to write out the list of samples that failed after + # each Job is run, and we want to organize that output by project, we + # need to keep a running state of failed samples, and reuse the method + # to reorganize the running-results and write them out to disk. + + self.output_path = join(output_dir, 'failed_samples.html') + + # create an initial dictionary with sample-ids as keys and their + # associated project-name and status as values. Afterwards, we'll + # filter out the sample-ids w/no status (meaning they were + # successfully processed) before writing the failed entries out to + # file. + self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} + + def write(self, failed_ids, job_name): + for failed_id in failed_ids: + # as a rule, if a failed_id were to appear in more than one + # audit(), preserve the earliest failure, rather than the + # latest one. + if self.failed[failed_id][1] is None: + self.failed[failed_id][1] = job_name + + # filter out the sample-ids w/out a failure status + filtered_fails = {x: self.failed[x] for x in self.failed if + self.failed[x][1] is not None} + + data = [] + for sample_id in filtered_fails: + project_name = filtered_fails[sample_id][0] + failed_at = filtered_fails[sample_id][1] + data.append({'Project': project_name, 'Sample ID': sample_id, + 'Failed at': failed_at}) + df = pd.DataFrame(data) + + with open(self.output_path, 'w') as f: + f.write(df.to_html(border=2, index=False, justify="left", + render_links=True, escape=False)) + + +def parse_prep_file(prep_file_path): + metadata = pd.read_csv(prep_file_path, + dtype=str, + delimiter='\t', + # forces Pandas to not make the first column the + # index even when the values appear numeric. + index_col=False) + + if metadata is None: + raise ValueError(f"{prep_file_path} does not exist.") + + metadata.set_index('sample_name', inplace=True) + + # convert to standard dictionary. + return metadata.to_dict('index') + + +def update_sample_sheet(sample_sheet_path, lane_number): + # use KLSampleSheet functionality to add/overwrite lane number. + sheet = KLSampleSheet(sample_sheet_path) + for sample in sheet: + sample['Lane'] = f'{lane_number}' + + with open(sample_sheet_path, 'w') as f: + sheet.write(f) + + +def generate_special_map(results, projects): + # this function should be able to be tested by passing in simulated = + # results from qclient. + + # trimmed files are stored by qiita_id. Find the qiita_id + # associated with each project and ensure a subdirectory exists + # for when it comes time to move the trimmed files. + special_map = [] + for project in projects: + upload_path = join(results['uploads'], project['qiita_id']) + makedirs(upload_path, exist_ok=True) + special_map.append((project['project_name'], upload_path, + project['qiita_id'])) + + return special_map + + +def generate_pipeline(pipeline_type, input_file_path, lane_number, config_fp, + run_identifier, out_dir, job_id): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + update_sample_sheet(input_file_path, lane_number) + return Pipeline(config_fp, run_identifier, input_file_path, None, + out_dir, job_id, pipeline_type) + elif pipeline_type == 'amplicon': + return Pipeline(config_fp, run_identifier, None, input_file_path, + out_dir, job_id, pipeline_type) + else: + raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") + + +def get_data_type(pipeline_type, target_gene=None): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + return pipeline_type + elif pipeline_type == 'amplicon': + if target_gene: + for key in {'16S', '18S', 'ITS'}: + if key in target_gene: + return key + else: + raise ValueError("target_gene must be specified for amplicon type") + else: + raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") + + +def update_prep_templates(qclient, prep_file_paths): + ''' + Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. + :param qclient: + :param prep_file_paths: + :return: A dict of lists of prep-ids, keyed by study-id. + ''' + results = defaultdict(list) + + for study_id in prep_file_paths: + for prep_file_path in prep_file_paths[study_id]: + metadata = parse_prep_file(prep_file_path) + target_gene = metadata[list(metadata.keys())[0]]['target_gene'] + + data = {'prep_info': dumps(metadata), + 'study': study_id, + 'data_type': get_data_type(target_gene)} + + reply = qclient.post('/qiita_db/prep_template/', data=data) + prep_id = reply['prep'] + results[study_id].append(prep_id) + + return results + + +def get_registered_samples_in_qiita(qclient, qiita_id): + ''' + Obtain lists for sample-names and tube-ids registered in Qiita. + :param qclient: QiitaClient object + :param qiita_id: Qiita ID for the project in question. + :return: a tuple of lists, one for sample-names and another for tube-ids. + ''' + samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') + + # remove Qiita ID as a prefix from the sample-names. + samples = {x.replace(f'{qiita_id}.', '') for x in samples} + + # find out if tube-ids are registered in the study. + categories = qclient.get(f'/api/v1/study/{qiita_id}' + '/samples/info')['categories'] + + if 'tube_id' in categories: + tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' + 'categories=tube_id')['samples'] + else: + tids = None + + return (samples, tids) + + def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): """Sequence Processing Pipeline command @@ -107,11 +366,15 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): samples = project['samples'] sample_name_diff = samples - tids if tids else samples - qsam + project_name = project['project_name'] + qiita_id = project['qiita_id'] + qurl = f'/api/v1/study/{qiita_id}/samples' + if tids: # strip any leading zeroes from the sample-ids. Note that # if a sample-id has more than one leading zero, all of # them will be removed. - my_samples = {x.lstrip('0') for x in my_samples} + my_samples = {x.lstrip('0') for x in samples} # once any leading zeros have been removed, recalculate # sample_name_diff before continuing processing. sample_name_diff = my_samples - qsam @@ -175,7 +438,13 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): step.generate_prep_file() - sifs = step.work_in_progress() + from_qiita = {} + + for study_id in step.prep_file_paths: + samples = list(qclient.get(f'/api/v1/study/{study_id}/samples')) + from_qiita[study_id] = samples + + sifs = step.generate_sifs(from_qiita) update_blanks_in_qiita(sifs, qclient) @@ -183,8 +452,23 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): update_prep_templates(qclient, prep_file_paths) + touched_studies_prep_info = defaultdict(list) + + for study_id in step.prep_file_paths: + for prep_file_path in step.prep_file_paths[study_id]: + metadata = parse_prep_file(prep_file_path) + data = {'prep_info': dumps(metadata), + 'study': study_id, + # THIS MIGHT NEED CONVERSION FROM AMPLICON TO 16S + 'data_type': step.pipeline.type} + + reply = qclient.post('/qiita_db/prep_template/', data=data) + prep_id = reply['prep'] + + touched_studies_prep_info[study_id].append(prep_id) + # generate commands to execute - step.generate_commands() + step.generate_commands(special_map, touched_studies_prep_info) step.execute_commands() diff --git a/qp_klp/klp_util.py b/qp_klp/klp_util.py deleted file mode 100644 index a40e5da0..00000000 --- a/qp_klp/klp_util.py +++ /dev/null @@ -1,263 +0,0 @@ -import pandas as pd -from json import dumps -from metapool import KLSampleSheet -from os import makedirs -from os.path import join -from sequence_processing_pipeline.Pipeline import Pipeline -from sequence_processing_pipeline.PipelineError import PipelineError -from collections import defaultdict - - -def update_blanks_in_qiita(sifs, qclient): - for sif_path in sifs: - # get study_id from sif_file_name ...something_14385_blanks.tsv - study_id = sif_path.split('_')[-2] - - df = pd.read_csv(sif_path, delimiter='\t', dtype=str) - - # Prepend study_id to make them compatible w/list from Qiita. - df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) - - # SIFs only contain BLANKs. Get the list of potentially new BLANKs. - blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] - blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] - if len(blanks) == 0: - # we have nothing to do so let's return early - return - - # Get list of BLANKs already registered in Qiita. - from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') - from_qiita = [x for x in from_qiita if - x.startswith(f'{study_id}.BLANK')] - - # Generate list of BLANKs that need to be ADDED to Qiita. - new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) - - if len(new_blanks): - # Generate dummy entries for each new BLANK, if any. - categories = qclient.get(f'/api/v1/study/{study_id}/samples/' - 'info')['categories'] - - # initialize payload w/required dummy categories - data = {i: {c: 1 for c in categories} for i in new_blanks} - - # populate payload w/additional columns and/or overwrite existing - # columns w/metadata from SIF file. - sif_data = df.set_index('sample_name').T.to_dict() - for new_blank in new_blanks: - for column in sif_data[new_blank]: - data[new_blank][column] = sif_data[new_blank][column] - - # http_patch will raise Error if insert failed. - qclient.http_patch(f'/api/v1/study/{study_id}/samples', - data=dumps(data)) - - return data - - -def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): - for proj in sn_tid_map_by_proj: - if sn_tid_map_by_proj[proj] is not None: - # this project has tube-ids registered in Qiita. - # find the prep-file associated with this project. - for prep_file in prep_info_file_paths: - # not the best check but good enough for now. - if proj in prep_file: - df = pd.read_csv(prep_file, sep='\t', - dtype=str, index_col=False) - # save a copy of sample_name column as 'old_sample_name' - df['old_sample_name'] = df['sample_name'] - for i in df.index: - smpl_name = df.at[i, "sample_name"] - if not smpl_name.startswith('BLANK'): - # remove any leading zeroes if they exist - smpl_name = smpl_name.lstrip('0') - if smpl_name in sn_tid_map_by_proj[proj]: - tube_id = sn_tid_map_by_proj[proj][smpl_name] - df.at[i, "sample_name"] = tube_id - df.to_csv(prep_file, index=False, sep="\t") - - -class StatusUpdate(): - def __init__(self, qclient, job_id, step_count): - self.qclient = qclient - self.job_id = job_id - self.msg = '' - self.current_step = 0 - self.step_count = step_count - - def update_job_status(self, status, id): - # internal function implements a callback function for Pipeline.run(). - # :param id: PBS/Torque/or some other informative and current job id. - # :param status: status message - self.qclient.update_job_step(self.job_id, - self.msg + f" ({id}: {status})") - - def update_current_message(self, msg, include_step=True): - # internal function that sets current_message to the new value before - # updating the job step in the UI. - if include_step: - self.current_step += 1 - self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" - else: - self.msg = msg - - self.qclient.update_job_step(self.job_id, self.msg) - - -class FailedSamplesRecord: - def __init__(self, output_dir, samples): - # because we want to write out the list of samples that failed after - # each Job is run, and we want to organize that output by project, we - # need to keep a running state of failed samples, and reuse the method - # to reorganize the running-results and write them out to disk. - - self.output_path = join(output_dir, 'failed_samples.html') - - # create an initial dictionary with sample-ids as keys and their - # associated project-name and status as values. Afterwards, we'll - # filter out the sample-ids w/no status (meaning they were - # successfully processed) before writing the failed entries out to - # file. - self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} - - def write(self, failed_ids, job_name): - for failed_id in failed_ids: - # as a rule, if a failed_id were to appear in more than one - # audit(), preserve the earliest failure, rather than the - # latest one. - if self.failed[failed_id][1] is None: - self.failed[failed_id][1] = job_name - - # filter out the sample-ids w/out a failure status - filtered_fails = {x: self.failed[x] for x in self.failed if - self.failed[x][1] is not None} - - data = [] - for sample_id in filtered_fails: - project_name = filtered_fails[sample_id][0] - failed_at = filtered_fails[sample_id][1] - data.append({'Project': project_name, 'Sample ID': sample_id, - 'Failed at': failed_at}) - df = pd.DataFrame(data) - - with open(self.output_path, 'w') as f: - f.write(df.to_html(border=2, index=False, justify="left", - render_links=True, escape=False)) - - -def parse_prep_file(prep_file_path): - metadata = pd.read_csv(prep_file_path, - dtype=str, - delimiter='\t', - # forces Pandas to not make the first column the - # index even when the values appear numeric. - index_col=False) - - if metadata is None: - raise ValueError(f"{prep_file_path} does not exist.") - - metadata.set_index('sample_name', inplace=True) - - # convert to standard dictionary. - return metadata.to_dict('index') - - -def update_sample_sheet(sample_sheet_path, lane_number): - # use KLSampleSheet functionality to add/overwrite lane number. - sheet = KLSampleSheet(sample_sheet_path) - for sample in sheet: - sample['Lane'] = f'{lane_number}' - - with open(sample_sheet_path, 'w') as f: - sheet.write(f) - -def generate_special_map(results, projects): - # this function should be able to be tested by passing in simulated = - # results from qclient. - - # trimmed files are stored by qiita_id. Find the qiita_id - # associated with each project and ensure a subdirectory exists - # for when it comes time to move the trimmed files. - special_map = [] - for project in projects: - upload_path = join(results['uploads'], project['qiita_id']) - makedirs(upload_path, exist_ok=True) - special_map.append((project['project_name'], upload_path, - project['qiita_id'])) - - return special_map - -def generate_pipeline(pipeline_type, input_file_path, lane_number,config_fp, - run_identifier, out_dir, job_id): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - update_sample_sheet(input_file_path, lane_number) - return Pipeline(config_fp, run_identifier, input_file_path, None, - out_dir, job_id, pipeline_type) - elif pipeline_type == 'amplicon': - return Pipeline(config_fp, run_identifier, None, input_file_path, - out_dir, job_id, pipeline_type) - else: - raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") - -def get_data_type(pipeline_type, target_gene=None): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - return pipeline_type - elif pipeline_type == 'amplicon': - if target_gene: - for key in {'16S', '18S', 'ITS'}: - if key in target_gene: - return key - else: - raise ValueError("target_gene must be specified for amplicon type") - else: - raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") - - -def update_prep_templates(qclient, prep_file_paths): - ''' - Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. - :param qclient: - :param prep_file_paths: - :return: A dict of lists of prep-ids, keyed by study-id. - ''' - results = defaultdict(list) - - for study_id in prep_file_paths: - for prep_file_path in prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) - target_gene = metadata[list(metadata.keys())[0]]['target_gene'] - - data = {'prep_info': dumps(metadata), - 'study': study_id, - 'data_type': get_data_type(target_gene)} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - results[study_id].append(prep_id) - - return results - -def get_registered_samples_in_qiita(qclient, qiita_id): - ''' - Obtain lists for sample-names and tube-ids registered in Qiita. - :param qclient: QiitaClient object - :param qiita_id: Qiita ID for the project in question. - :return: a tuple of lists, one for sample-names and another for tube-ids. - ''' - samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') - - # remove Qiita ID as a prefix from the sample-names. - samples = {x.replace(f'{qiita_id}.', '') for x in samples} - - # find out if tube-ids are registered in the study. - categories = qclient.get(f'/api/v1/study/{qiita_id}' - '/samples/info')['categories'] - - if 'tube_id' in categories: - tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' - 'categories=tube_id')['samples'] - else: - tids = None - - return (samples, tids) From 135780ccd6b54e4c0e9b358c7e815aab930835d0 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 15 May 2023 21:16:12 -0700 Subject: [PATCH 03/35] Laying out new test classes --- qp_klp/MetagenomicStep.py | 2 +- qp_klp/Step.py | 6 +- qp_klp/__init__.py | 2 +- qp_klp/klp.py | 265 +--- qp_klp/klp_util.py | 278 ++++ ..._000000000-KVMH3.ABTX_20230227_11052.1.tsv | 577 --------- qp_klp/tests/RunInfo.xml | 16 - qp_klp/tests/bad_mapping_file.txt | 385 ------ qp_klp/tests/good-prep-file.txt | 50 - qp_klp/tests/good-sample-sheet.csv | 814 ------------ qp_klp/tests/good_mapping_file.txt | 25 - .../tests/sample_info_file_1_bad_blanks.tsv | 5 - qp_klp/tests/sample_info_file_1_blanks.tsv | 13 - qp_klp/tests/test_klp.py | 1126 ----------------- qp_klp/tests/test_klp_util.py | 21 + qp_klp/tests/test_step.py | 15 + 16 files changed, 322 insertions(+), 3278 deletions(-) create mode 100644 qp_klp/klp_util.py delete mode 100644 qp_klp/tests/230224_M05314_0347_000000000-KVMH3.ABTX_20230227_11052.1.tsv delete mode 100644 qp_klp/tests/RunInfo.xml delete mode 100644 qp_klp/tests/bad_mapping_file.txt delete mode 100644 qp_klp/tests/good-prep-file.txt delete mode 100644 qp_klp/tests/good-sample-sheet.csv delete mode 100644 qp_klp/tests/good_mapping_file.txt delete mode 100644 qp_klp/tests/sample_info_file_1_bad_blanks.tsv delete mode 100644 qp_klp/tests/sample_info_file_1_blanks.tsv delete mode 100644 qp_klp/tests/test_klp.py create mode 100644 qp_klp/tests/test_step.py diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index 76738f63..86ed2f22 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -145,7 +145,7 @@ def generate_commands(self, special_map, server_url, self.cmds.append(f'cd {out_dir}; mv FastQCJob/multiqc final_results') if exists(join(out_dir, 'touched_studies.html')): - f'cd {out_dir}; mv touched_studies.html final_results' + tmp = f'cd {out_dir}; mv touched_studies.html final_results' self.cmds.append(tmp) if exists(join(out_dir, 'failed_samples.html')): diff --git a/qp_klp/Step.py b/qp_klp/Step.py index b09d5b0d..5528f00c 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -171,11 +171,9 @@ def generate_sifs(self, from_qiita): # generate SIF files with add_sif_info as additional metadata input. # duplicate sample-names and non-blanks will be handled properly. - sifs = self.pipeline.generate_sample_info_files(add_sif_info) + self.sifs = self.pipeline.generate_sample_info_files(add_sif_info) - self.sifs = sifs - - return sifs + return self.sifs def get_prep_file_paths(self): return self.prep_file_paths diff --git a/qp_klp/__init__.py b/qp_klp/__init__.py index 6b055682..2997c1ad 100644 --- a/qp_klp/__init__.py +++ b/qp_klp/__init__.py @@ -13,7 +13,7 @@ class QiitaPluginAdmin(QiitaPlugin): _plugin_type = "private" -__version__ = '2022.04' +__version__ = '2023.05' plugin = QiitaPluginAdmin('qp-klp', __version__, 'Knight Lab Processing') diff --git a/qp_klp/klp.py b/qp_klp/klp.py index fbb6a4b9..f83eaa78 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -11,9 +11,11 @@ from random import sample as rsampl from qp_klp.AmpliconStep import AmpliconStep from qp_klp.MetagenomicStep import MetagenomicStep -import pandas as pd +from qp_klp.klp_util import (generate_pipeline, generate_special_map, + get_registered_samples_in_qiita, parse_prep_file, + update_blanks_in_qiita, update_prep_templates, + StatusUpdate) from json import dumps -from metapool import KLSampleSheet from os import makedirs from os.path import join from sequence_processing_pipeline.Pipeline import Pipeline @@ -24,265 +26,6 @@ CONFIG_FP = environ["QP_KLP_CONFIG_FP"] -def update_blanks_in_qiita(sifs, qclient): - for sif_path in sifs: - # get study_id from sif_file_name ...something_14385_blanks.tsv - study_id = sif_path.split('_')[-2] - - df = pd.read_csv(sif_path, delimiter='\t', dtype=str) - - # Prepend study_id to make them compatible w/list from Qiita. - df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) - - # SIFs only contain BLANKs. Get the list of potentially new BLANKs. - blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] - blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] - if len(blanks) == 0: - # we have nothing to do so let's return early - return - - # Get list of BLANKs already registered in Qiita. - from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') - from_qiita = [x for x in from_qiita if - x.startswith(f'{study_id}.BLANK')] - - # Generate list of BLANKs that need to be ADDED to Qiita. - new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) - - if len(new_blanks): - # Generate dummy entries for each new BLANK, if any. - categories = qclient.get(f'/api/v1/study/{study_id}/samples/' - 'info')['categories'] - - # initialize payload w/required dummy categories - data = {i: {c: 1 for c in categories} for i in new_blanks} - - # populate payload w/additional columns and/or overwrite existing - # columns w/metadata from SIF file. - sif_data = df.set_index('sample_name').T.to_dict() - for new_blank in new_blanks: - for column in sif_data[new_blank]: - data[new_blank][column] = sif_data[new_blank][column] - - # http_patch will raise Error if insert failed. - qclient.http_patch(f'/api/v1/study/{study_id}/samples', - data=dumps(data)) - - return data - - -def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): - for proj in sn_tid_map_by_proj: - if sn_tid_map_by_proj[proj] is not None: - # this project has tube-ids registered in Qiita. - # find the prep-file associated with this project. - for prep_file in prep_info_file_paths: - # not the best check but good enough for now. - if proj in prep_file: - df = pd.read_csv(prep_file, sep='\t', - dtype=str, index_col=False) - # save a copy of sample_name column as 'old_sample_name' - df['old_sample_name'] = df['sample_name'] - for i in df.index: - smpl_name = df.at[i, "sample_name"] - if not smpl_name.startswith('BLANK'): - # remove any leading zeroes if they exist - smpl_name = smpl_name.lstrip('0') - if smpl_name in sn_tid_map_by_proj[proj]: - tube_id = sn_tid_map_by_proj[proj][smpl_name] - df.at[i, "sample_name"] = tube_id - df.to_csv(prep_file, index=False, sep="\t") - - -class StatusUpdate(): - def __init__(self, qclient, job_id, step_count): - self.qclient = qclient - self.job_id = job_id - self.msg = '' - self.current_step = 0 - self.step_count = step_count - - def update_job_status(self, status, id): - # internal function implements a callback function for Pipeline.run(). - # :param id: PBS/Torque/or some other informative and current job id. - # :param status: status message - self.qclient.update_job_step(self.job_id, - self.msg + f" ({id}: {status})") - - def update_current_message(self, msg, include_step=True): - # internal function that sets current_message to the new value before - # updating the job step in the UI. - if include_step: - self.current_step += 1 - self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" - else: - self.msg = msg - - self.qclient.update_job_step(self.job_id, self.msg) - - -class FailedSamplesRecord: - def __init__(self, output_dir, samples): - # because we want to write out the list of samples that failed after - # each Job is run, and we want to organize that output by project, we - # need to keep a running state of failed samples, and reuse the method - # to reorganize the running-results and write them out to disk. - - self.output_path = join(output_dir, 'failed_samples.html') - - # create an initial dictionary with sample-ids as keys and their - # associated project-name and status as values. Afterwards, we'll - # filter out the sample-ids w/no status (meaning they were - # successfully processed) before writing the failed entries out to - # file. - self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} - - def write(self, failed_ids, job_name): - for failed_id in failed_ids: - # as a rule, if a failed_id were to appear in more than one - # audit(), preserve the earliest failure, rather than the - # latest one. - if self.failed[failed_id][1] is None: - self.failed[failed_id][1] = job_name - - # filter out the sample-ids w/out a failure status - filtered_fails = {x: self.failed[x] for x in self.failed if - self.failed[x][1] is not None} - - data = [] - for sample_id in filtered_fails: - project_name = filtered_fails[sample_id][0] - failed_at = filtered_fails[sample_id][1] - data.append({'Project': project_name, 'Sample ID': sample_id, - 'Failed at': failed_at}) - df = pd.DataFrame(data) - - with open(self.output_path, 'w') as f: - f.write(df.to_html(border=2, index=False, justify="left", - render_links=True, escape=False)) - - -def parse_prep_file(prep_file_path): - metadata = pd.read_csv(prep_file_path, - dtype=str, - delimiter='\t', - # forces Pandas to not make the first column the - # index even when the values appear numeric. - index_col=False) - - if metadata is None: - raise ValueError(f"{prep_file_path} does not exist.") - - metadata.set_index('sample_name', inplace=True) - - # convert to standard dictionary. - return metadata.to_dict('index') - - -def update_sample_sheet(sample_sheet_path, lane_number): - # use KLSampleSheet functionality to add/overwrite lane number. - sheet = KLSampleSheet(sample_sheet_path) - for sample in sheet: - sample['Lane'] = f'{lane_number}' - - with open(sample_sheet_path, 'w') as f: - sheet.write(f) - - -def generate_special_map(results, projects): - # this function should be able to be tested by passing in simulated = - # results from qclient. - - # trimmed files are stored by qiita_id. Find the qiita_id - # associated with each project and ensure a subdirectory exists - # for when it comes time to move the trimmed files. - special_map = [] - for project in projects: - upload_path = join(results['uploads'], project['qiita_id']) - makedirs(upload_path, exist_ok=True) - special_map.append((project['project_name'], upload_path, - project['qiita_id'])) - - return special_map - - -def generate_pipeline(pipeline_type, input_file_path, lane_number, config_fp, - run_identifier, out_dir, job_id): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - update_sample_sheet(input_file_path, lane_number) - return Pipeline(config_fp, run_identifier, input_file_path, None, - out_dir, job_id, pipeline_type) - elif pipeline_type == 'amplicon': - return Pipeline(config_fp, run_identifier, None, input_file_path, - out_dir, job_id, pipeline_type) - else: - raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") - - -def get_data_type(pipeline_type, target_gene=None): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - return pipeline_type - elif pipeline_type == 'amplicon': - if target_gene: - for key in {'16S', '18S', 'ITS'}: - if key in target_gene: - return key - else: - raise ValueError("target_gene must be specified for amplicon type") - else: - raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") - - -def update_prep_templates(qclient, prep_file_paths): - ''' - Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. - :param qclient: - :param prep_file_paths: - :return: A dict of lists of prep-ids, keyed by study-id. - ''' - results = defaultdict(list) - - for study_id in prep_file_paths: - for prep_file_path in prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) - target_gene = metadata[list(metadata.keys())[0]]['target_gene'] - - data = {'prep_info': dumps(metadata), - 'study': study_id, - 'data_type': get_data_type(target_gene)} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - results[study_id].append(prep_id) - - return results - - -def get_registered_samples_in_qiita(qclient, qiita_id): - ''' - Obtain lists for sample-names and tube-ids registered in Qiita. - :param qclient: QiitaClient object - :param qiita_id: Qiita ID for the project in question. - :return: a tuple of lists, one for sample-names and another for tube-ids. - ''' - samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') - - # remove Qiita ID as a prefix from the sample-names. - samples = {x.replace(f'{qiita_id}.', '') for x in samples} - - # find out if tube-ids are registered in the study. - categories = qclient.get(f'/api/v1/study/{qiita_id}' - '/samples/info')['categories'] - - if 'tube_id' in categories: - tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' - 'categories=tube_id')['samples'] - else: - tids = None - - return (samples, tids) - - def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): """Sequence Processing Pipeline command diff --git a/qp_klp/klp_util.py b/qp_klp/klp_util.py new file mode 100644 index 00000000..779a0ce4 --- /dev/null +++ b/qp_klp/klp_util.py @@ -0,0 +1,278 @@ +# ----------------------------------------------------------------------------- +# Copyright (c) 2014--, The Qiita Development Team. +# +# Distributed under the terms of the BSD 3-clause License. +# +# The full license is in the file LICENSE, distributed with this software. +# ----------------------------------------------------------------------------- +from os import environ +import pandas as pd +from json import dumps +from metapool import KLSampleSheet +from os import makedirs +from os.path import join +from sequence_processing_pipeline.Pipeline import Pipeline +from sequence_processing_pipeline.PipelineError import PipelineError +from collections import defaultdict + + +CONFIG_FP = environ["QP_KLP_CONFIG_FP"] + + +def update_blanks_in_qiita(sifs, qclient): + for sif_path in sifs: + # get study_id from sif_file_name ...something_14385_blanks.tsv + study_id = sif_path.split('_')[-2] + + df = pd.read_csv(sif_path, delimiter='\t', dtype=str) + + # Prepend study_id to make them compatible w/list from Qiita. + df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) + + # SIFs only contain BLANKs. Get the list of potentially new BLANKs. + blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] + blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] + if len(blanks) == 0: + # we have nothing to do so let's return early + return + + # Get list of BLANKs already registered in Qiita. + from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') + from_qiita = [x for x in from_qiita if + x.startswith(f'{study_id}.BLANK')] + + # Generate list of BLANKs that need to be ADDED to Qiita. + new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) + + if len(new_blanks): + # Generate dummy entries for each new BLANK, if any. + categories = qclient.get(f'/api/v1/study/{study_id}/samples/' + 'info')['categories'] + + # initialize payload w/required dummy categories + data = {i: {c: 1 for c in categories} for i in new_blanks} + + # populate payload w/additional columns and/or overwrite existing + # columns w/metadata from SIF file. + sif_data = df.set_index('sample_name').T.to_dict() + for new_blank in new_blanks: + for column in sif_data[new_blank]: + data[new_blank][column] = sif_data[new_blank][column] + + # http_patch will raise Error if insert failed. + qclient.http_patch(f'/api/v1/study/{study_id}/samples', + data=dumps(data)) + + return data + + +def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): + for proj in sn_tid_map_by_proj: + if sn_tid_map_by_proj[proj] is not None: + # this project has tube-ids registered in Qiita. + # find the prep-file associated with this project. + for prep_file in prep_info_file_paths: + # not the best check but good enough for now. + if proj in prep_file: + df = pd.read_csv(prep_file, sep='\t', + dtype=str, index_col=False) + # save a copy of sample_name column as 'old_sample_name' + df['old_sample_name'] = df['sample_name'] + for i in df.index: + smpl_name = df.at[i, "sample_name"] + if not smpl_name.startswith('BLANK'): + # remove any leading zeroes if they exist + smpl_name = smpl_name.lstrip('0') + if smpl_name in sn_tid_map_by_proj[proj]: + tube_id = sn_tid_map_by_proj[proj][smpl_name] + df.at[i, "sample_name"] = tube_id + df.to_csv(prep_file, index=False, sep="\t") + + +class StatusUpdate(): + def __init__(self, qclient, job_id, step_count): + self.qclient = qclient + self.job_id = job_id + self.msg = '' + self.current_step = 0 + self.step_count = step_count + + def update_job_status(self, status, id): + # internal function implements a callback function for Pipeline.run(). + # :param id: PBS/Torque/or some other informative and current job id. + # :param status: status message + self.qclient.update_job_step(self.job_id, + self.msg + f" ({id}: {status})") + + def update_current_message(self, msg, include_step=True): + # internal function that sets current_message to the new value before + # updating the job step in the UI. + if include_step: + self.current_step += 1 + self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" + else: + self.msg = msg + + self.qclient.update_job_step(self.job_id, self.msg) + + +class FailedSamplesRecord: + def __init__(self, output_dir, samples): + # because we want to write out the list of samples that failed after + # each Job is run, and we want to organize that output by project, we + # need to keep a running state of failed samples, and reuse the method + # to reorganize the running-results and write them out to disk. + + self.output_path = join(output_dir, 'failed_samples.html') + + # create an initial dictionary with sample-ids as keys and their + # associated project-name and status as values. Afterwards, we'll + # filter out the sample-ids w/no status (meaning they were + # successfully processed) before writing the failed entries out to + # file. + self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} + + def write(self, failed_ids, job_name): + for failed_id in failed_ids: + # as a rule, if a failed_id were to appear in more than one + # audit(), preserve the earliest failure, rather than the + # latest one. + if self.failed[failed_id][1] is None: + self.failed[failed_id][1] = job_name + + # filter out the sample-ids w/out a failure status + filtered_fails = {x: self.failed[x] for x in self.failed if + self.failed[x][1] is not None} + + data = [] + for sample_id in filtered_fails: + project_name = filtered_fails[sample_id][0] + failed_at = filtered_fails[sample_id][1] + data.append({'Project': project_name, 'Sample ID': sample_id, + 'Failed at': failed_at}) + df = pd.DataFrame(data) + + with open(self.output_path, 'w') as f: + f.write(df.to_html(border=2, index=False, justify="left", + render_links=True, escape=False)) + + +def parse_prep_file(prep_file_path): + metadata = pd.read_csv(prep_file_path, + dtype=str, + delimiter='\t', + # forces Pandas to not make the first column the + # index even when the values appear numeric. + index_col=False) + + if metadata is None: + raise ValueError(f"{prep_file_path} does not exist.") + + metadata.set_index('sample_name', inplace=True) + + # convert to standard dictionary. + return metadata.to_dict('index') + + +def update_sample_sheet(sample_sheet_path, lane_number): + # use KLSampleSheet functionality to add/overwrite lane number. + sheet = KLSampleSheet(sample_sheet_path) + for sample in sheet: + sample['Lane'] = f'{lane_number}' + + with open(sample_sheet_path, 'w') as f: + sheet.write(f) + + +def generate_special_map(results, projects): + # this function should be able to be tested by passing in simulated = + # results from qclient. + + # trimmed files are stored by qiita_id. Find the qiita_id + # associated with each project and ensure a subdirectory exists + # for when it comes time to move the trimmed files. + special_map = [] + for project in projects: + upload_path = join(results['uploads'], project['qiita_id']) + makedirs(upload_path, exist_ok=True) + special_map.append((project['project_name'], upload_path, + project['qiita_id'])) + + return special_map + + +def generate_pipeline(pipeline_type, input_file_path, lane_number, config_fp, + run_identifier, out_dir, job_id): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + update_sample_sheet(input_file_path, lane_number) + return Pipeline(config_fp, run_identifier, input_file_path, None, + out_dir, job_id, pipeline_type) + elif pipeline_type == 'amplicon': + return Pipeline(config_fp, run_identifier, None, input_file_path, + out_dir, job_id, pipeline_type) + else: + raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") + + +def get_data_type(pipeline_type, target_gene=None): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + return pipeline_type + elif pipeline_type == 'amplicon': + if target_gene: + for key in {'16S', '18S', 'ITS'}: + if key in target_gene: + return key + else: + raise ValueError("target_gene must be specified for amplicon type") + else: + raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") + + +def update_prep_templates(qclient, prep_file_paths): + ''' + Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. + :param qclient: + :param prep_file_paths: + :return: A dict of lists of prep-ids, keyed by study-id. + ''' + results = defaultdict(list) + + for study_id in prep_file_paths: + for prep_file_path in prep_file_paths[study_id]: + metadata = parse_prep_file(prep_file_path) + target_gene = metadata[list(metadata.keys())[0]]['target_gene'] + + data = {'prep_info': dumps(metadata), + 'study': study_id, + 'data_type': get_data_type(target_gene)} + + reply = qclient.post('/qiita_db/prep_template/', data=data) + prep_id = reply['prep'] + results[study_id].append(prep_id) + + return results + + +def get_registered_samples_in_qiita(qclient, qiita_id): + ''' + Obtain lists for sample-names and tube-ids registered in Qiita. + :param qclient: QiitaClient object + :param qiita_id: Qiita ID for the project in question. + :return: a tuple of lists, one for sample-names and another for tube-ids. + ''' + samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') + + # remove Qiita ID as a prefix from the sample-names. + samples = {x.replace(f'{qiita_id}.', '') for x in samples} + + # find out if tube-ids are registered in the study. + categories = qclient.get(f'/api/v1/study/{qiita_id}' + '/samples/info')['categories'] + + if 'tube_id' in categories: + tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' + 'categories=tube_id')['samples'] + else: + tids = None + + return (samples, tids) diff --git a/qp_klp/tests/230224_M05314_0347_000000000-KVMH3.ABTX_20230227_11052.1.tsv b/qp_klp/tests/230224_M05314_0347_000000000-KVMH3.ABTX_20230227_11052.1.tsv deleted file mode 100644 index f5c811b6..00000000 --- a/qp_klp/tests/230224_M05314_0347_000000000-KVMH3.ABTX_20230227_11052.1.tsv +++ /dev/null @@ -1,577 +0,0 @@ -sample_name center_name center_project_name experiment_design_description instrument_model lane library_construction_protocol platform run_center run_date run_prefix runid sample_plate sequencing_meth barcode linker primer extraction_robot extractionkit_lot mastermix_lot orig_name pcr_primers plating primer_date primer_plate processing_robot project_name target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id -3.4.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AGCCTTCGTCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.4.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.4.21.RK.ST.1800_A1 A1 -3.8.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TCCATACCGGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.8.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.8.21.RK.ST.1000_A2 A2 -2.29.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AGCCCTGCTACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.29.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.29.21.RK.ST.1030_A3 A3 -2.14.21.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CCTAACGGTCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.14.21.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.14.21.RK.ST.2300_A4 A4 -2.24.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGCGCCTTAAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.24.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.24.21.RK.ST.1400_A5 A5 -2.12.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TATGGTACCCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.12.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.12.21.RK.ST.0730_A6 A6 -2.4.21.RK.ST.2230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TACAATATCTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.4.21.RK.ST.2230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.4.21.RK.ST.2230_A7 A7 -1.29.21.RK.ST.1445 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATTTAGGTAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.29.21.RK.ST.1445 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.29.21.RK.ST.1445_A8 A8 -BLANK204.9A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GACTCAACCAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9A_A9 A9 -1.25.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GCCTCTACGTCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.25.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.25.21.RK.ST.1100_A10 A10 -1.10.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACTACTGAGGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.10.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.10.21.RK.ST.0800_A11 A11 -11.27.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATTCACCTCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.27.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.27.20.RK.ST.1100_A12 A12 -3.7.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGTATAAATGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.7.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.7.21.RK.ST.1800_B1 B1 -3.9.21.RK.ST.0750 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ATGCTGCAACAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.9.21.RK.ST.0750 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.9.21.RK.ST.0750_B2 B2 -2.25.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACTCGCTCGCTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.25.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.25.21.RK.ST.0730_B3 B3 -2.23.21.RK.ST.0615 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TTCCTTAGTAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.23.21.RK.ST.0615 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.23.21.RK.ST.0615_B4 B4 -2.15.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGTCCGTATGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.15.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.15.21.RK.ST.0700_B5 B5 -2.8.21.RK.ST.1730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACGTGAGGAACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.8.21.RK.ST.1730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.8.21.RK.ST.1730_B6 B6 -2.12.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GGTTGCCCTGTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.12.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.12.21.RK.ST.1500_B7 B7 -1.29.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CATATAGCCCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.29.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.29.21.RK.ST.2200_B8 B8 -BLANK204.9B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GCCTATGAGATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9B_B9 B9 -1.9.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CAAGTGAAGGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.9.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.9.21.RK.ST.1500_B10 B10 -1.7.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CACGTTTATTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.7.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.7.21.RK.ST.0800_B11 B11 -11.26.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TAATCGGTGCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.26.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.26.20.RK.ST.1500_B12 B12 -3.1.21.RK.ST.1900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGACTAATGGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.1.21.RK.ST.1900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.1.21.RK.ST.1900_C1 C1 -3.9.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGGGACACCCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.9.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.9.21.RK.ST.1100_C2 C2 -2.26.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTGTCTATACTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.26.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.26.21.RK.ST.0700_C3 C3 -2.23.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TATGCCAGAGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.23.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.23.21.RK.ST.1200_C4 C4 -2.15.21.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGTTTGGAATGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.15.21.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.15.21.RK.ST.2000_C5 C5 -2.8.21.RK.ST.0715 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AAGAACTCATGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.8.21.RK.ST.0715 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.8.21.RK.ST.0715_C6 C6 -2.1.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGATATCGTCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.1.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.1.21.RK.ST.1500_C7 C7 -1.27.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGGTGACCTACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.27.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.27.21.RK.ST.1400_C8 C8 -BLANK204.9C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATGCGCGTATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9C_C9 C9 -1.9.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTTGATTCTTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.9.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.9.21.RK.ST.1000_C10 C10 -1.6.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GAAATCTTGAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.6.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.6.21.RK.ST.1000_C11 C11 -11.26.20.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GAGATACAGTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.26.20.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.26.20.RK.ST.2300_C12 C12 -3.6.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTGGAGTCTCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.6.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.6.21.RK.ST.1400_D1 D1 -3.3.21.RK.ST.0720 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACCTTACACCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.3.21.RK.ST.0720 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.3.21.RK.ST.0720_D2 D2 -2.22.21.RK.ST.0530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TAATCTCGCCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.22.21.RK.ST.0530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.22.21.RK.ST.0530_D3 D3 -2.23.21.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ATCTAGTGGCAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.23.21.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.23.21.RK.ST.2300_D4 D4 -2.11.21.RK.ST.1430 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACGCTTAACGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.11.21.RK.ST.1430 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.11.21.RK.ST.1430_D5 D5 -2.8.21.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TACGGATTATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.8.21.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.8.21.RK.ST.2000_D6 D6 -2.3.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ATACATGCAAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.3.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.3.21.RK.ST.1000_D7 D7 -1.26.21.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTTAGTGCAGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.26.21.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.26.21.RK.ST.1130_D8 D8 -BLANK204.9D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATCTTGCGCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9D_D9 D9 -1.25.21.RK.ST.0500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AGGATCAGGGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.25.21.RK.ST.0500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.25.21.RK.ST.0500_D10 D10 -1.6.21.RK.ST.2145 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATAACTAGGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.6.21.RK.ST.2145 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.6.21.RK.ST.2145_D11 D11 -11.24.20.RK.ST.1900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TATTGCAGCAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.24.20.RK.ST.1900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.24.20.RK.ST.1900_D12 D12 -3.6.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGATGTGCTAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.6.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.6.21.RK.ST.0730_E1 E1 -2.19.21.RK.ST.0400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTAGTAGACCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.19.21.RK.ST.0400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.19.21.RK.ST.0400_E2 E2 -2.16.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AGTAAAGATCGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.16.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.16.21.RK.ST.1400_E3 E3 -2.28.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTCGCCCTCGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.28.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.28.21.RK.ST.0800_E4 E4 -2.11.21.RK.ST.0715 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TCTCTTTCGACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.11.21.RK.ST.0715 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.11.21.RK.ST.0715_E5 E5 -2.7.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACATACTGAGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.7.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.7.21.RK.ST.1300_E6 E6 -2.3.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTTGATACGATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.3.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.3.21.RK.ST.1800_E7 E7 -1.26.RK.ST.1530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTCAACGCTGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.26.RK.ST.1530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.26.RK.ST.1530_E8 E8 -BLANK204.9E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGAGACCCTACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9E_E9 E9 -1.8.21.RK.ST.0720 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACTTGGTGTAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.8.21.RK.ST.0720 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.8.21.RK.ST.0720_E10 E10 -1.5.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ATTACGTATCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.5.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.5.21.RK.ST.1100_E11 E11 -11.24.20.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CACGCAGTCTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.24.20.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.24.20.RK.ST.1030_E12 E12 -3.7.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGTGCACGCCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.7.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.7.21.RK.ST.0830_F1 F1 -2.19.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CCGGACAAGAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.19.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.19.21.RK.ST.0700_F2 F2 -2.16.21.RK.ST.0945 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TTGCTGGACGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.16.21.RK.ST.0945 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.16.21.RK.ST.0945_F3 F3 -2.28.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TACTAACGCGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.28.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.28.21.RK.ST.1700_F4 F4 -2.10.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GCGATCACACCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.10.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.10.21.RK.ST.1200_F5 F5 -2.9.21.RK.ST.0745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CAAACGCACTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.9.21.RK.ST.0745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.9.21.RK.ST.0745_F6 F6 -1.31.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GAAGAGGGTTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.31.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.31.21.RK.ST.1200_F7 F7 -1.26.21.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGAGTGGTCTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.26.21.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.26.21.RK.ST.2130_F8 F8 -BLANK204.9F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TTACACAAAGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9F_F9 F9 -1.8.21.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACGACGCATTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.8.21.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.8.21.RK.ST.2130_F10 F10 -1.5.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TATCCAAGCGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.5.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.5.21.RK.ST.2200_F11 F11 -10.22.20.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AGAGCCAAGAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.22.20.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_10.22.20.RK.ST.0900_F12 F12 -3.5.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GGTGAGCAAGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.5.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.5.21.RK.ST.0730_G1 G1 -2.20.21.RK.ST.0545 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TAAATATACCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.20.21.RK.ST.0545 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.20.21.RK.ST.0545_G2 G2 -2.16.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TTGCGGACCCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.16.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.16.21.RK.ST.2200_G3 G3 -2.18.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTCGTCCAAATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.18.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.18.21.RK.ST.0900_G4 G4 -2.10.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGCACAGTCGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.10.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.10.21.RK.ST.1800_G5 G5 -2.5.21.RK.ST.1830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TTACTGTGGCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.5.21.RK.ST.1830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.5.21.RK.ST.1830_G6 G6 -1.28.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GGTTCATGAACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.28.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.28.21.RK.ST.1100_G7 G7 -1.9.21.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TAACAATAATTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.9.21.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.9.21.RK.ST.2300_G8 G8 -BLANK204.9G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTTATTAAACGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9G_G9 G9 -1.8.21.RK.ST.1145 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GCTCGAAGATTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.8.21.RK.ST.1145 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.8.21.RK.ST.1145_G10 G10 -1.9.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TATTTGATTGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.9.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.9.21.RK.ST.0700_G11 G11 -10.21.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGTCAAAGTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.21.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_10.21.20.RK.ST.1100_G12 G12 -3.3.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CTATGTATTAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 3.3.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_3.3.21.RK.ST.1400_H1 H1 -2.29.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACTCCCGTGTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.29.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.29.21.RK.ST.1000_H2 H2 -2.27.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGGTATAGCAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.27.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.27.21.RK.ST.1000_H3 H3 -2.20.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GACTCTGCTCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.20.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.20.21.RK.ST.1000_H4 H4 -2.9.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTCATGCTCCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.9.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.9.21.RK.ST.1500_H5 H5 -2.4.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TACCGAAGGTAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 2.4.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_2.4.21.RK.ST.1200_H6 H6 -1.31.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis TGAGTATGAGTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.31.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.31.21.RK.ST.0700_H7 H7 -1.25.21.RK.ST.2115 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis AATGGTTCAGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.25.21.RK.ST.2115 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.25.21.RK.ST.2115_H8 H8 -BLANK204.9H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GAACCAGTACTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK204.9H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_BLANK204.9H_H9 H9 -1.10.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis CGCACCCATACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.10.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_1.10.21.RK.ST.1100_H10 H10 -11.24.20.RK.ST.0530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis GTGCCATAATCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.24.20.RK.ST.0530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_11.24.20.RK.ST.0530_H11 H11 -10.22.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_204 Sequencing by synthesis ACTCTTACTTAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.22.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RY 1202022 1 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_204_10.22.20.RK.ST.1600_H12 H12 -10.21.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTACAGGGTCTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.21.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.21.20.RK.ST.1400_A1 A1 -10.23.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTTGGAGGCTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.23.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.23.20.RK.ST.1600_A2 A2 -11.9.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TATCATATTACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.9.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.9.20.RK.ST.1600_A3 A3 -11.2.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTATATTATCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.2.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.2.20.RK.ST.0700_A4 A4 -10.16.20.RK.ST.0600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACCGAACAATCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.16.20.RK.ST.0600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.16.20.RK.ST.0600_A5 A5 -10.10.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACGGTACCCTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.10.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.10.20.RK.ST.0700_A6 A6 -10.5.20.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TGAGTCATTGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.5.20.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.5.20.RK.ST.0800_A7 A7 -9.28.20.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACCTACTTGTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.28.20.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.28.20.RK.ST.0730_A8 A8 -9.25.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACTGTGACGTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.25.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.25.20.RK.ST.1100_A9 A9 -1.1.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTCTGAGGTAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.1.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.1.21.RK.ST.1300_A10 A10 -1.20.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CATGTCTTCCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.20.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.20.21.RK.ST.1100_A11 A11 -BLANK207.12A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AACAGTAAACAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12A_A12 A12 -10.31.20.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTTCATTAAACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.31.20.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.31.20.RK.ST.0730_B1 B1 -10.24.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTGCCGGCCGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.24.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.24.20.RK.ST.1400_B2 B2 -11.12.20.RK.ST.1930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCTTGACCGATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.12.20.RK.ST.1930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.12.20.RK.ST.1930_B3 B3 -11.5.20.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CAAACTGCGTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.5.20.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.5.20.RK.ST.2200_B4 B4 -10.19.20.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCGAGAGTTTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.19.20.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.19.20.RK.ST.0800_B5 B5 -10.10.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGACACGGAGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.10.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.10.20.RK.ST.1400_B6 B6 -10.1.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCCACAGGGTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.1.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.1.20.RK.ST.1100_B7 B7 -10.4.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GGAGAACGACAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.4.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.4.20.RK.ST.1130_B8 B8 -10.12.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCTACCATTGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.12.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.12.20.RK.ST.0700_B9 B9 -1.13.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCCGGCGGGCAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.13.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.13.21.RK.ST.1400_B10 B10 -1.18.21.RK.ST.1900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAATCCATAATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.18.21.RK.ST.1900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.18.21.RK.ST.1900_B11 B11 -BLANK207.12B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCTCCGTCATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12B_B12 B12 -10.29.20.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TTCGATGCCGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.29.20.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.29.20.RK.ST.1700_C1 C1 -10.27.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGAGGGTGATCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.27.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.27.20.RK.ST.0700_C2 C2 -11.12.20.RK.ST.1145 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGCTCTAGAAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.12.20.RK.ST.1145 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.12.20.RK.ST.1145_C3 C3 -11.5.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTGACACGAATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.5.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.5.20.RK.ST.1100_C4 C4 -10.18.20.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCTGCCCACCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.18.20.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.18.20.RK.ST.0800_C5 C5 -10.9.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCGTTTGCTAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.9.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.9.20.RK.ST.1130_C6 C6 -9.25.20.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGATCGTGCCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.25.20.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.25.20.RK.ST.2100_C7 C7 -10.7.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AATTAATATGTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.7.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.7.20.RK.ST.1400_C8 C8 -9.29.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V5 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CATTTCGCACTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.29.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.29.20.RK.ST.1600_C9 C9 -1.24.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V6 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACATGATATTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.24.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.24.21.RK.ST.0800_C10 C10 -1.14.21.RK.ST.0630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V7 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCAACGAACGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.14.21.RK.ST.0630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.14.21.RK.ST.0630_C11 C11 -BLANK207.12C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V8 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGATGTCCGTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12C_C12 C12 -10.21.20.RK.ST.1230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V9 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCGTTATTCAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.21.20.RK.ST.1230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.21.20.RK.ST.1230_D1 D1 -10.30.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V10 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GGATACTCGCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.30.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.30.20.RK.ST.1100_D2 D2 -11.8.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V11 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AATGTTCAACTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.8.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.8.20.RK.ST.0700_D3 D3 -11.2.20.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V12 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGCAGTGCGGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.2.20.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.2.20.RK.ST.2130_D4 D4 -10.14.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V13 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCATATGCACTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.14.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.14.20.RK.ST.1130_D5 D5 -11.25.20.RK.ST.1830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V14 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCGGCGACAGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.25.20.RK.ST.1830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.25.20.RK.ST.1830_D6 D6 -10.2.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V15 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCTCACTAGCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.2.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.2.20.RK.ST.1200_D7 D7 -10.6.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V16 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTAATCAGAGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.6.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.6.20.RK.ST.1200_D8 D8 -1.1.21.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V17 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTACTCCACGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.1.21.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.1.21.RK.ST.2130_D9 D9 -1.23.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V18 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAAGGCATCGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.23.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.23.21.RK.ST.1000_D10 D10 -1.19.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V19 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGCGCGGCGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.19.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.19.21.RK.ST.1200_D11 D11 -BLANK207.12D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V20 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAGCAGTTGCGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12D_D12 D12 -10.20.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V21 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACTCTGTAATTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.20.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.20.20.RK.ST.0700_E1 E1 -11.9.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V22 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCATGGCCTCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.9.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.9.20.RK.ST.1400_E2 E2 -11.6.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V23 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CAATCATAGGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.6.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.6.20.RK.ST.1400_E3 E3 -11.7.20.RK.ST.0630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V24 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTTGGACGAAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.7.20.RK.ST.0630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.7.20.RK.ST.0630_E4 E4 -10.14.20.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V25 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTCACTCCGAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.14.20.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.14.20.RK.ST.0730_E5 E5 -10.11.20.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V26 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGTTCTGGTGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.11.20.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.11.20.RK.ST.0730_E6 E6 -9.30.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V27 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAGTTCGGTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.30.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.30.20.RK.ST.0700_E7 E7 -10.5.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V28 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TTAATGGATCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.5.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.5.20.RK.ST.1600_E8 E8 -1.3.21.RK.ST.1630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V29 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCAAGTCCGCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.3.21.RK.ST.1630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.3.21.RK.ST.1630_E9 E9 -1.12.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V30 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CACACAAAGTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.12.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.12.21.RK.ST.2200_E10 E10 -1.19.21.RK.ST.0945 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V31 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTCAGGTGCGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.19.21.RK.ST.0945 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.19.21.RK.ST.0945_E11 E11 -BLANK207.12E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V32 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TTGAACAAGCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12E_E12 E12 -10.25.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V33 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ATATGTTCTCAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.25.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.25.20.RK.ST.1200_F1 F1 -11.11.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V34 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ATGTGCTGCTCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.11.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.11.20.RK.ST.1000_F2 F2 -11.3.20.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V35 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCGATAAAGGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.3.20.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.3.20.RK.ST.2200_F3 F3 -11.4.20.RK.ST.1330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V36 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CAGGAACCAGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.4.20.RK.ST.1330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.4.20.RK.ST.1330_F4 F4 -10.13.20.RK.ST.0930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V37 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCATAAACGACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.13.20.RK.ST.0930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.13.20.RK.ST.0930_F5 F5 -10.3.20.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V38 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ATCGTAGTGGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.3.20.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.3.20.RK.ST.1300_F6 F6 -9.23.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V39 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACTAAAGCAAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.23.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.23.20.RK.ST.0700_F7 F7 -10.7.20.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V40 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAGGAACTCACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.7.20.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.7.20.RK.ST.0730_F8 F8 -1.3.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V41 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTCCGTCCTGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.3.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.3.21.RK.ST.1000_F9 F9 -1.21.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V42 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGAGGCGAGTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.21.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.21.21.RK.ST.1300_F10 F10 -1.24.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V43 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TTCCAATACTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.24.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.24.21.RK.ST.1100_F11 F11 -BLANK207.12F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V44 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AACTCAATAGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12F_F12 F12 -10.28.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V45 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCAGACCAACTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.28.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.28.20.RK.ST.0700_G1 G1 -11.11.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V46 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCACGAGCAGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.11.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.11.20.RK.ST.1200_G2 G2 -11.3.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V47 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GCGTGCCCGGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.3.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.3.20.RK.ST.1500_G3 G3 -10.16.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V48 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CAAAGGAGCCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.16.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.16.20.RK.ST.1200_G4 G4 -10.17.20.RK.ST.0530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V49 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TGCGGCGTCAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.17.20.RK.ST.0530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.17.20.RK.ST.0530_G5 G5 -10.8.20.RK.ST.1330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V50 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGCTGTGGATTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.8.20.RK.ST.1330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.8.20.RK.ST.1330_G6 G6 -10.2.20.RK.ST.1830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V51 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTTGCTCATAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.2.20.RK.ST.1830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.2.20.RK.ST.1830_G7 G7 -9.27.20.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V52 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACGACAACGGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.27.20.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.27.20.RK.ST.2300_G8 G8 -1.3.21.RK.ST.0600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V53 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CTAGCGTGCGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.3.21.RK.ST.0600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.3.21.RK.ST.0600_G9 G9 -1.12.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V54 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAGTCTAAGGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.12.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.12.21.RK.ST.1200_G10 G10 -1.24.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V55 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTTTGAAACACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.24.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.24.21.RK.ST.0900_G11 G11 -BLANK207.12G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V56 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ACCTCAGTCAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12G_G12 G12 -10.27.20.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V57 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TCATTAGCGTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.27.20.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.27.20.RK.ST.1700_H1 H1 -11.1.20.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V58 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGCCGTACTTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.1.20.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.1.20.RK.ST.0900_H2 H2 -11.3.20.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V59 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TAAACCTGGACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 11.3.20.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_11.3.20.RK.ST.1800_H3 H3 -10.20.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V60 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CCAACCCAGATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.20.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.20.20.RK.ST.1100_H4 H4 -10.15.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V61 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TTAAGTTAAGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.15.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.15.20.RK.ST.1130_H5 H5 -9.25.20.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V62 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis AGCCGCGGGTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.25.20.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.25.20.RK.ST.0900_H6 H6 -10.6.20.RK.ST.1630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V63 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GGTAGTTCATAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 10.6.20.RK.ST.1630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_10.6.20.RK.ST.1630_H7 H7 -9.23.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V64 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis CGATGAATATCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.23.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_9.23.20.RK.ST.1100_H8 H8 -1.2.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V65 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis GTTCTAAGGTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.2.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.2.21.RK.ST.1030_H9 H9 -1.16.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V66 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis ATGACTAAGATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.16.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.16.21.RK.ST.1300_H10 H10 -1.18.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V67 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TACAGCGCATAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.18.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_1.18.21.RK.ST.0800_H11 H11 -BLANK207.12H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V68 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_207 Sequencing by synthesis TGACAGAATCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK207.12H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 2 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_207_BLANK207.12H_H12 H12 -1.22.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V69 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCTCGCATGACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 1.22.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_1.22.21.RK.ST.0700_A1 A1 -7.25.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V70 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GGCGTAACGGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.25.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.25.21.RK.ST.1000_A2 A2 -BLANK210.3A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V71 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GCGAGGAAGTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3A_A3 A3 -7.26.21.RK.ST.1330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V72 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CAAATTCGGGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.26.21.RK.ST.1330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.26.21.RK.ST.1330_A4 A4 -12.26.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V73 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTGTGTCTCCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.26.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.26.20.RK.ST.1200_A5 A5 -12.13.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V74 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CAATGTAGACAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.13.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.13.20.RK.ST.1500_A6 A6 -7.27.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V75 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AACCACTAACCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.27.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.27.21.RK.ST.0830_A7 A7 -7.19.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V76 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AACTTTCAGGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.19.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.19.21.RK.ST.1300_A8 A8 -7.27.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V77 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCAGGACAGGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.27.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.27.21.RK.ST.0730_A9 A9 -7.17.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V78 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GCGCGGCGTTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.17.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.17.21.RK.ST.1300_A10 A10 -4.17.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V79 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTCGCTTGCACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.17.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.17.21.RK.ST.0800_A11 A11 -5.10.21.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V80 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCCGCCTAGTCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.10.21.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.10.21.RK.ST.1130_A12 A12 -12.25.20.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V81 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CGCGCAAGTATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.25.20.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.25.20.RK.ST.1800_B1 B1 -12.22.20.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V82 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AATACAGACCTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.22.20.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.22.20.RK.ST.0830_B2 B2 -BLANK210.3B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V83 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GGACAAGTGCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3B_B3 B3 -8.17.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V84 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TACGGTCTGGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.17.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.17.21.RK.ST.0900_B4 B4 -12.9.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V85 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTCAGTTCGTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.9.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.9.20.RK.ST.1500_B5 B5 -12.30.20.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V86 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCGCGTCTCAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.30.20.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.30.20.RK.ST.2200_B6 B6 -8.1.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V87 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCGAGGTATAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.1.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.1.21.RK.ST.1700_B7 B7 -8.13.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V88 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGATTCGCTCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.13.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.13.21.RK.ST.0700_B8 B8 -12.23.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V89 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTGCCGCTCTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.23.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.23.20.RK.ST.1200_B9 B9 -8.27.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V90 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGACTTCTCAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.27.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.27.21.RK.ST.1100_B10 B10 -5.14.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V91 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCTTGCGGAGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.14.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.14.21.RK.ST.1100_B11 B11 -5.14.21.RK.ST.0100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V92 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CTATCTCCTGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.14.21.RK.ST.0100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.14.21.RK.ST.0100_B12 B12 -12.19.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V93 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AAGGCGCTCCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.19.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.19.20.RK.ST.1000_C1 C1 -7.28.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V94 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GATCTAATCGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.28.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.28.21.RK.ST.0700_C2 C2 -BLANK210.3C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V95 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CTGATGTACACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3C_C3 C3 -7.21.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V96 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACGTATTCGAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.21.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.21.21.RK.ST.1300_C4 C4 -7.28.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V97 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GACGTTAAGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.28.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.28.21.RK.ST.1100_C5 C5 -7.17.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V98 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TGGTGGAGTTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.17.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.17.21.RK.ST.1500_C6 C6 -7.18.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V99 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTAACAAGGCAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.18.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.18.21.RK.ST.0800_C7 C7 -7.14.21.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V100 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AACCGCATAAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.14.21.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.14.21.RK.ST.2300_C8 C8 -12.9.20.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V101 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCACAACGATCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.9.20.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.9.20.RK.ST.0700_C9 C9 -4.15.21.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V102 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGTTCTCATTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.15.21.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.15.21.RK.ST.730_C10 C10 -5.31.21.RK.ST.0030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V103 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GAGCCATCTGTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.31.21.RK.ST.0030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.31.21.RK.ST.0030_C11 C11 -4.21.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V104 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GATATACCAGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.21.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.21.21.RK.ST.0900_C12 C12 -12.18.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V105 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CGCAATGAGGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.18.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.18.20.RK.ST.1000_D1 D1 -7.17.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V106 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCGCAGCCGCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.17.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.17.21.RK.ST.0830_D2 D2 -BLANK210.3D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V107 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TGGAGCCTTGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3D_D3 D3 -12.26.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V108 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTACTTATCCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.26.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.26.20.RK.ST.1000_D4 D4 -8.25.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V109 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATGGGACCTTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.25.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.25.21.RK.ST.0900_D5 D5 -12.24.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V110 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCCGATAATCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.24.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.24.20.RK.ST.1000_D6 D6 -7.30.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V111 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AAGTCACACACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.30.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.30.21.RK.ST.1000_D7 D7 -12.27.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V112 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GAAGTAGCGAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.27.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.27.20.RK.ST.1200_D8 D8 -12.10.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V113 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CACCATCTCCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.10.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.10.20.RK.ST.1100_D9 D9 -5.31.21.RK.ST.1230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V114 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTGTCGAGGGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.31.21.RK.ST.1230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.31.21.RK.ST.1230_D10 D10 -4.20.21.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V115 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTCCACACGTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.20.21.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.20.21.RK.ST.1130_D11 D11 -4.24.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V116 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGAATCCACCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.24.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.24.21.RK.ST.0900_D12 D12 -7.31.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V117 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACGGCGTTATGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.31.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.31.21.RK.ST.1000_E1 E1 -12.11.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V118 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GAACCGTGCAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.11.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.11.20.RK.ST.1000_E2 E2 -BLANK210.3E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V119 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACGTGCCTTAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3E_E3 E3 -8.18.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V120 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGTTGTAGTCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.18.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.18.21.RK.ST.1400_E4 E4 -12.14.20.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V121 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGGGACTTCAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.14.20.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.14.20.RK.ST.0830_E5 E5 -8.17.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V122 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CGGCCAGAAGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.17.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.17.21.RK.ST.1000_E6 E6 -12.31.20.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V123 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TGGCAGCGAGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.31.20.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.31.20.RK.ST.2000_E7 E7 -12.16.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V124 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTGAATGTTCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.16.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.16.20.RK.ST.1000_E8 E8 -12.13.20.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V125 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TATGTTGACGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.13.20.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.13.20.RK.ST.0900_E9 E9 -5.14.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V126 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGTGTTTCGGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.14.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.14.21.RK.ST.1700_E10 E10 -4.18.21.RK.ST.0930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V127 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATTTCCGCTAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.18.21.RK.ST.0930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.18.21.RK.ST.0930_E11 E11 -4.26.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V128 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CAAACCTATGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.26.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.26.21.RK.ST.1200_E12 E12 -12.21.20.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V129 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CATTTGACGACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.21.20.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.21.20.RK.ST.2130_F1 F1 -8.7.21.RK.ST.0745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V130 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACTAAGTACCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.7.21.RK.ST.0745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.7.21.RK.ST.0745_F2 F2 -BLANK210.3F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V131 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CACCCTTGCGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3F_F3 F3 -12.12.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V132 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GATGCCTAATGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.12.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.12.20.RK.ST.1100_F4 F4 -9.3.20.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V133 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTACGTCACTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.3.20.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_9.3.20.RK.ST.0900_F5 F5 -12.29.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V134 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCGCTACAGATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.29.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.29.20.RK.ST.1400_F6 F6 -12.9.20.RK.ST.2330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V135 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCGGCTTATGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.9.20.RK.ST.2330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.9.20.RK.ST.2330_F7 F7 -7.22.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V136 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATAGTCCTTTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.22.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.22.21.RK.ST.1400_F8 F8 -12.31.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V137 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCGAGCCGATCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.31.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.31.21.RK.ST.1200_F9 F9 -4.17.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V138 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGTGCAGGAGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.17.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.17.21.RK.ST.1100_F10 F10 -5.10.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V139 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTACTCGAACCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.10.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.10.21.RK.ST.0830_F11 F11 -4.23.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V140 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATAGGAATAACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.23.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.23.21.RK.ST.1400_F12 F12 -12.9.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V141 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GCTGCGTATACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.9.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.9.20.RK.ST.1000_G1 G1 -12.22.20.RK.ST.1930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V142 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CTCAGCGGGACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.22.20.RK.ST.1930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.22.20.RK.ST.1930_G2 G2 -BLANK210.3G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V143 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATGCCTCGTAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3G_G3 G3 -7.26.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V144 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TTAGTTTGTCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.26.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.26.21.RK.ST.0800_G4 G4 -12.28.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V145 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CCGGCCGCGTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.28.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.28.20.RK.ST.1100_G5 G5 -12.17.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V146 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATTATGATTATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.17.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.17.20.RK.ST.1000_G6 G6 -8.11.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V147 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CGAATACTGACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.11.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.11.21.RK.ST.0730_G7 G7 -12.29.20.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V148 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCTTATAACGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.29.20.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.29.20.RK.ST.1800_G8 G8 -7.20.21.RK.ST.0630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V149 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TAAGGTCGATAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.20.21.RK.ST.0630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.20.21.RK.ST.0630_G9 G9 -5.12.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V150 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTTGCTGAGTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.12.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.12.21.RK.ST.0800_G10 G10 -5.9.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V151 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACACCGCACAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.9.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.9.21.RK.ST.0800_G11 G11 -4.23.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V152 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CACAACCACAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.23.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.23.21.RK.ST.0800_G12 G12 -12.20.20.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V153 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GAGAAGCTTATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.20.20.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.20.20.RK.ST.0800_H1 H1 -7.23.21.RK.ST.1930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V154 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTTAACTTACTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.23.21.RK.ST.1930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.23.21.RK.ST.1930_H2 H2 -BLANK210.3H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V155 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GTTGTTCTGGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK210.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_BLANK210.3H_H3 H3 -7.23.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V156 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis AGGGTGACTTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.23.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.23.21.RK.ST.1300_H4 H4 -7.20.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V157 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GCCGCCAGGGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.20.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.20.21.RK.ST.1400_H5 H5 -8.7.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V158 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis GCCACCGCCGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 8.7.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_8.7.21.RK.ST.1700_H6 H6 -9.6.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V159 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ACACACCCTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 9.6.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_9.6.21.RK.ST.1500_H7 H7 -12.26.20.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V160 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TATAGGCTCCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 12.26.20.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_12.26.20.RK.ST.1400_H8 H8 -7.31.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V161 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis ATAATTGCCGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.31.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_7.31.21.RK.ST.0900_H9 H9 -5.12.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V162 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CGGAGAGACATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.12.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.12.21.RK.ST.1030_H10 H10 -4.14.21.RK.ST.1230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V163 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis CAGCCCTACCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.14.21.RK.ST.1230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_4.14.21.RK.ST.1230_H11 H11 -5.30.21.RK.ST.0930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V164 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_210 Sequencing by synthesis TCGTTGGGACTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.30.21.RK.ST.0930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 3 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_210_5.30.21.RK.ST.0930_H12 H12 -5.16.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V165 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TAGGACGGGAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.16.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.16.21.RK.ST.0900_A1 A1 -5.26.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V166 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AAGTCTTATCTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.26.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.26.21.RK.ST.1200_A2 A2 -5.6.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V167 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TTGCACCGTCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.6.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.6.21.RK.ST.1200_A3 A3 -5.4.21.RK.ST.1230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V168 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTCCGAACAACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.4.21.RK.ST.1230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.4.21.RK.ST.1230_A4 A4 -5.11.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V169 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCTGGCTACGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.11.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.11.21.RK.ST.1500_A5 A5 -5.3.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V170 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGTAGTTTCCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.3.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.3.21.RK.ST.1100_A6 A6 -5.24.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V171 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CAGATCCCAACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.24.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.24.21.RK.ST.0800_A7 A7 -BLANK215.8A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V172 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GATAGCACTCGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8A_A8 A8 -7.7.21.RK.ST.0745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V173 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTAATTGTAATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.7.21.RK.ST.0745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.7.21.RK.ST.0745_A9 A9 -6.10.21.RK.ST.0930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V174 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TGCTACAGACGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.10.21.RK.ST.0930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.10.21.RK.ST.0930_A10 A10 -6.28.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V175 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGGTGAGTTCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.28.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.28.21.RK.ST.0700_A11 A11 -7.3.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V176 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AACGATCATAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.3.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.3.21.RK.ST.1300_A12 A12 -5.16.21.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V177 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTTTGGCCACAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.16.21.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.16.21.RK.ST.1600_B1 B1 -5.19.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V178 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTCCTACACAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.19.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.19.21.RK.ST.1800_B2 B2 -5.6.21.RK.ST.0300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V179 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ATTTACAATTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.6.21.RK.ST.0300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.6.21.RK.ST.0300_B3 B3 -5.2.21.RK.ST.0600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V180 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CCACTGCCCACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.2.21.RK.ST.0600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.2.21.RK.ST.0600_B4 B4 -5.21.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V181 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ATAGTTAGGGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.21.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.21.21.RK.ST.0800_B5 B5 -5.5.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V182 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GACCCGTTTCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.5.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.5.21.RK.ST.0900_B6 B6 -5.24.21.RK.ST.1915 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V183 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TGACTGCGTTAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.24.21.RK.ST.1915 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.24.21.RK.ST.1915_B7 B7 -BLANK215.8B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V184 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACGTTAATATTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8B_B8 B8 -4.16.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V185 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCTAACGAGTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.16.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.16.21.RK.ST.0800_B9 B9 -7.9.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V186 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GATCCCACGTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.9.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.9.21.RK.ST.0830_B10 B10 -6.25.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V187 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CCGCCAGCTTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.25.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.25.21.RK.ST.2200_B11 B11 -7.6.21.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V188 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCATCTTGATTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.6.21.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.6.21.RK.ST.1800_B12 B12 -5.13.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V189 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TATATAGTATCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.13.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.13.21.RK.ST.1030_C1 C1 -5.28.21.RK.ST.0300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V190 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACTGTTTACTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.28.21.RK.ST.0300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.28.21.RK.ST.0300_C2 C2 -4.19.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V191 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTCACGGACATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.19.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.19.21.RK.ST.1000_C3 C3 -5.2.21.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V192 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GAATATACCTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.2.21.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.2.21.RK.ST.2000_C4 C4 -5.21.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V193 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GAATCTGACAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.21.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.21.21.RK.ST.1500_C5 C5 -5.5.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V194 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ATTGCCTTGATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.5.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.5.21.RK.ST.1200_C6 C6 -7.4.21.RK.ST.0930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V195 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GAGCCCAAAGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.4.21.RK.ST.0930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.4.21.RK.ST.0930_C7 C7 -BLANK215.8C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V196 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CCATGTGGCTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8C_C8 C8 -4.13.21.RK.ST.0845 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V197 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGTTCCTTGTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.13.21.RK.ST.0845 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.13.21.RK.ST.0845_C9 C9 -7.9.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V198 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGCTAGGATGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.9.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.9.21.RK.ST.1400_C10 C10 -7.2.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V199 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGCGGTAGCGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.2.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.2.21.RK.ST.2200_C11 C11 -6.14.21.RK.ST.2230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V200 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTCAGTATGGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.14.21.RK.ST.2230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.14.21.RK.ST.2230_C12 C12 -5.18.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V201 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CATAAGGGAGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.18.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.18.21.RK.ST.1700_D1 D1 -5.28.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V202 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CAGGCCACTCTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.28.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.28.21.RK.ST.0830_D2 D2 -4.19.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V203 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACAGTTGTACGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.19.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.19.21.RK.ST.0830_D3 D3 -5.22.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V204 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACCAGAAATGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.22.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.22.21.RK.ST.0800_D4 D4 -4.28.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V205 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTCATCATGTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.28.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.28.21.RK.ST.1400_D5 D5 -5.23.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V206 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TTAGGATTCTAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.23.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.23.21.RK.ST.1030_D6 D6 -6.21.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V207 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CAACGAACCATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.21.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.21.21.RK.ST.1100_D7 D7 -BLANK215.8D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V208 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACACGTTTGGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8D_D8 D8 -6.1.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V209 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGTCGCAGCCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.1.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.1.21.RK.ST.1700_D9 D9 -7.13.21.RK.ST.2015 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V210 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTACTTACATCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.13.21.RK.ST.2015 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.13.21.RK.ST.2015_D10 D10 -6.25.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V211 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGCACGTACCTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.25.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.25.21.RK.ST.1400_D11 D11 -6.14.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V212 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTCCTCGCGACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.14.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.14.21.RK.ST.0800_D12 D12 -5.18.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V213 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTGCAACCAATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.18.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.18.21.RK.ST.0830_E1 E1 -5.28.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V214 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACCCAAGCGTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.28.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.28.21.RK.ST.2200_E2 E2 -4.25.21.RK.ST.0945 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V215 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACTGGCAAACCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.25.21.RK.ST.0945 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.25.21.RK.ST.0945_E3 E3 -5.1.21.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V216 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AACACCATCGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.1.21.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.1.21.RK.ST.1600_E4 E4 -4.27.21.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V217 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TTATCCAGTCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.27.21.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.27.21.RK.ST.1600_E5 E5 -5.23.21.RK.ST.0700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V218 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTTTATCTTAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.23.21.RK.ST.0700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.23.21.RK.ST.0700_E6 E6 -6.26.21.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V219 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTTCGCCGCATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.26.21.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.26.21.RK.ST.1300_E7 E7 -BLANK215.8E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V220 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGACTATTTCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8E_E8 E8 -6.16.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V221 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGCGATTCCTCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.16.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.16.21.RK.ST.1700_E9 E9 -6.9.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V222 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACCACCGTAACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.9.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.9.21.RK.ST.1000_E10 E10 -7.2.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V223 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGGAAGTAACTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.2.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.2.21.RK.ST.0800_E11 E11 -6.11.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V224 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGTTCGCTAGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.11.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.11.21.RK.ST.1100_E12 E12 -5.26.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V225 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTCACCTAGGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.26.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.26.21.RK.ST.1500_F1 F1 -4.29.21.RK.ST.0845 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V226 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGATGCAATGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.29.21.RK.ST.0845 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.29.21.RK.ST.0845_F2 F2 -4.25.21.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V227 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GCATTCGGCGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.25.21.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.25.21.RK.ST.2300_F3 F3 -5.3.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V228 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCTACATACATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.3.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.3.21.RK.ST.1700_F4 F4 -4.27.21.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V229 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GAGTCTTGGTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.27.21.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.27.21.RK.ST.1400_F5 F5 -5.25.21.RK.ST.1230 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V230 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CAGTCTAGTACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.25.21.RK.ST.1230 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.25.21.RK.ST.1230_F6 F6 -6.23.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V231 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTTCGAGTGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.23.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.23.21.RK.ST.1000_F7 F7 -BLANK215.8F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V232 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGTCCGAGTTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8F_F8 F8 -7.11.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V233 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGTGAGGACCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.11.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.11.21.RK.ST.0900_F9 F9 -6.19.21.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V234 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGGTTGGCGGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.19.21.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.19.21.RK.ST.1000_F10 F10 -6.29.21.RK.ST.2345 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V235 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGATTCCTTAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.29.21.RK.ST.2345 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.29.21.RK.ST.2345_F11 F11 -6.4.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V236 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TGCCTGCTCGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.4.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.4.21.RK.ST.0900_F12 F12 -5.26.21.RK.ST.0730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V237 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TACTGTACTGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.26.21.RK.ST.0730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.26.21.RK.ST.0730_G1 G1 -5.7.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V238 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCTCGCACTGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.7.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.7.21.RK.ST.0800_G2 G2 -5.27.21.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V239 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACCAGTGACTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.27.21.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.27.21.RK.ST.2200_G3 G3 -5.17.21.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V240 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TGGCGCACGGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.17.21.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.17.21.RK.ST.1600_G4 G4 -5.8.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V241 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CATTTACATCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.8.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.8.21.RK.ST.0900_G5 G5 -5.25.21.RK.ST.0830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V242 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GTGGGACTGCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.25.21.RK.ST.0830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.25.21.RK.ST.0830_G6 G6 -6.23.21.RK.ST.0745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V243 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CGGCCTAAGTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.23.21.RK.ST.0745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.23.21.RK.ST.0745_G7 G7 -BLANK215.8G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V244 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GCTGAGCCTTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8G_G8 G8 -6.20.21.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V245 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AGAGACGCGTAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.20.21.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.20.21.RK.ST.1130_G9 G9 -6.18.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V246 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CCACCGGGCCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.18.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.18.21.RK.ST.0900_G10 G10 -6.16.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V247 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis AATCCGGTCACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.16.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.16.21.RK.ST.1100_G11 G11 -6.4.21.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V248 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TCTTACCCATAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.4.21.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.4.21.RK.ST.1700_G12 G12 -5.26.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V249 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTAGAGCTCCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.26.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.26.21.RK.ST.0800_H1 H1 -4.22.21.RK.ST.0800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V250 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GGTCTTAGCACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 4.22.21.RK.ST.0800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_4.22.21.RK.ST.0800_H2 H2 -5.27.21.RK.ST.0845 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V251 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GCCTACTCTCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.27.21.RK.ST.0845 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.27.21.RK.ST.0845_H3 H3 -5.17.21.RK.ST.0915 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V252 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACTGCCCGATAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.17.21.RK.ST.0915 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.17.21.RK.ST.0915_H4 H4 -5.8.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V253 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TTCTTAACGCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.8.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.8.21.RK.ST.1100_H5 H5 -5.24.21.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V254 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis CTCCCGAGCTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 5.24.21.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_5.24.21.RK.ST.1100_H6 H6 -6.24.21.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V255 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TAGACTTCAGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.24.21.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.24.21.RK.ST.1500_H7 H7 -BLANK215.8H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V256 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ACTTAGACTCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 BLANK215.8H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_BLANK215.8H_H8 H8 -6.28.21.RK.ST.0900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V257 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis GGACCTGGATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.28.21.RK.ST.0900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.28.21.RK.ST.0900_H9 H9 -6.12.21.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V258 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TATGTGCCGGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.12.21.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.12.21.RK.ST.1200_H10 H10 -7.8.21.RK.ST.1900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V259 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis ATACCGTCTTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 7.8.21.RK.ST.1900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_7.8.21.RK.ST.1900_H11 H11 -6.4.21.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V260 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_215 Sequencing by synthesis TGTGCTTGTAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1331807 6.4.21.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT RJK 1202022 4 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable 1317793 ABTX_20230227_11052_Plate_215_6.4.21.RK.ST.1030_H12 H12 -9.18.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V261 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATGTTAGGGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.18.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.18.19.RK.ST.900_A1 A1 -9.17.19.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V262 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCTAGTTATGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.17.19.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.17.19.RK.ST.2000_A2 A2 -11.16.19.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V263 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCATCCGTCGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.16.19.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.16.19.RK.ST.1200_A3 A3 -12.8.19.RK.ST.830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V264 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATTTGGCTCTTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.8.19.RK.ST.830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.8.19.RK.ST.830_A4 A4 -12.4.19.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V265 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GATCCGGCAGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.4.19.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.4.19.RK.ST.2100_A5 A5 -BLANK174.6A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V266 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTTAAGCTGACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6A_A6 A6 -9.4.19.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V267 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CCTATTGCGGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.4.19.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.4.19.RK.ST.1400_A7 A7 -9.8.19.RK.ST.930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V268 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CAATAGAATAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.8.19.RK.ST.930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.8.19.RK.ST.930_A8 A8 -8.24.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V269 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ACATAGCGGTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.24.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.24.19.RK.ST.900_A9 A9 -9.6.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V270 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCGTGGTCATTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.6.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.6.19.RK.ST.900_A10 A10 -8.19.19.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V271 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GATTCTTTAGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.19.19.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.19.19.RK.ST.1130_A11 A11 -8.16.19.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V272 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGGATCTAGTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.16.19.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.16.19.RK.ST.1030_A12 A12 -9.19.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V273 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AAGTGGCTATCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.19.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.19.19.RK.ST.1100_B1 B1 -5.18.19.RK.ST.1015 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V274 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ACTAGTTGGACC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.18.19.RK.ST.1015 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_5.18.19.RK.ST.1015_B2 B2 -11.23.19.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V275 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GGCTTCGGAGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.23.19.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.23.19.RK.ST.2200_B3 B3 -12.8.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V276 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGCGTCAAACTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.8.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.8.19.RK.ST.1100_B4 B4 -12.5.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V277 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTTCCAACTCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.5.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.5.19.RK.ST.1000_B5 B5 -BLANK174.6B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V278 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCCTAGCCCAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6B_B6 B6 -9.2.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V279 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTTAGGGAGCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.2.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.2.19.RK.ST.1100_B7 B7 -9.8.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V280 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TATACCGCTGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.8.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.8.19.RK.ST.1100_B8 B8 -8.27.19.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V281 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTTACACTGCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.27.19.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.27.19.RK.ST.1030_B9 B9 -9.6.19.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V282 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CCTGCACCTGCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.6.19.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.6.19.RK.ST.1400_B10 B10 -8.12.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V283 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGGACAAACTAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.12.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.12.19.RK.ST.1000_B11 B11 -8.15.19.RK.ST.600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V284 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATAACGGTGTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.15.19.RK.ST.600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.15.19.RK.ST.600_B12 B12 -9.20.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V285 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTCGTTACCCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.20.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.20.19.RK.ST.700_C1 C1 -11.15.19.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V286 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGCAAGCCCGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.15.19.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.15.19.RK.ST.1200_C2 C2 -11.22.19.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V287 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGGTCAATTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.22.19.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.22.19.RK.ST.800_C3 C3 -12.8.19.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V288 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATGTTCCTCATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.8.19.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.8.19.RK.ST.2300_C4 C4 -12.5.19.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V289 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGACCTCGCATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.5.19.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.5.19.RK.ST.1200_C5 C5 -BLANK174.6C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V290 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CATTCGTGGCGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6C_C6 C6 -9.11.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V291 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGTACGCAGTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.11.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.11.19.RK.ST.1100_C7 C7 -8.30.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V292 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CAGTGCACGTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.30.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.30.19.RK.ST.1100_C8 C8 -8.27.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V293 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ACTCACAGGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.27.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.27.19.RK.ST.1100_C9 C9 -8.31.19.RK.ST.1430 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V294 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TGGTGTTTATAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.31.19.RK.ST.1430 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.31.19.RK.ST.1430_C10 C10 -8.3.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V295 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCTTCCTAAAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.3.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.3.19.RK.ST.1100_C11 C11 -8.15.19.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V296 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCCCTTCCCGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.15.19.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.15.19.RK.ST.2200_C12 C12 -9.20.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V297 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGTATATGTTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.20.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.20.19.RK.ST.1100_D1 D1 -11.17.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V298 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGAGCGGAACAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.17.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.17.19.RK.ST.900_D2 D2 -11.22.19.RK.ST.200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V299 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCCGCTGCTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.22.19.RK.ST.200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.22.19.RK.ST.200_D3 D3 -12.2.19.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V300 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCCGTGGTATAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.2.19.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.2.19.RK.ST.1800_D4 D4 -12.3.19.RK.ST.530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V301 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTCAGAGTATTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.3.19.RK.ST.530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.3.19.RK.ST.530_D5 D5 -BLANK174.6D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V302 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCGGTCGGTCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6D_D6 D6 -9.11.19.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V303 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TATCCTGGTTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.11.19.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.11.19.RK.ST.1800_D7 D7 -9.13.19.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V304 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTGGTGCTGAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.13.19.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.13.19.RK.ST.730_D8 D8 -8.25.19.RK.ST.1045 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V305 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTTGAAGCACCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.25.19.RK.ST.1045 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.25.19.RK.ST.1045_D9 D9 -8.31.19.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V306 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTGCGGTTCACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.31.19.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.31.19.RK.ST.1600_D10 D10 -8.9.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V307 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTTGTGCGACAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.9.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.9.19.RK.ST.1100_D11 D11 -8.10.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V308 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CACAGTTGAAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.10.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.10.19.RK.ST.900_D12 D12 -9.21.19.RK.ST.500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V309 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GGCTCGTCGGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.21.19.RK.ST.500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.21.19.RK.ST.500_E1 E1 -11.18.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V310 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ACATGGGCGGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.18.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.18.19.RK.ST.1000_E2 E2 -11.21.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V311 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TGCGCGCCTTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.21.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.21.19.RK.ST.700_E3 E3 -12.1.19.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V312 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTTGGTTGGCAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.1.19.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.1.19.RK.ST.1800_E4 E4 -11.29.19.RK.ST.1530 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V313 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GAACGATCATGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.29.19.RK.ST.1530 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.29.19.RK.ST.1530_E5 E5 -BLANK174.6E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V314 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCAGTCAGATGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6E_E6 E6 -9.12.19.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V315 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTGGTCTTACGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.12.19.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.12.19.RK.ST.800_E7 E7 -9.13.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V316 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ACAAAGGTATCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.13.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.13.19.RK.ST.1000_E8 E8 -8.29.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V317 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTAAACGACTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.29.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.29.19.RK.ST.700_E9 E9 -8.28.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V318 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TAGCGCGAACTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.28.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.28.19.RK.ST.700_E10 E10 -8.22.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V319 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCGCTTAGAATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.22.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.22.19.RK.ST.700_E11 E11 -8.21.19.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V320 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCAAAGGCCCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.21.19.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.21.19.RK.ST.1130_E12 E12 -9.22.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V321 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GACATCTGACAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.22.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.22.19.RK.ST.700_F1 F1 -11.18.19.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V322 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTGCGGATATAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.18.19.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.18.19.RK.ST.2100_F2 F2 -12.7.19.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V323 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCGCACACCTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.7.19.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.7.19.RK.ST.1500_F3 F3 -11.30.19.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V324 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AACGGGCGACGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.30.19.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.30.19.RK.ST.2000_F4 F4 -9.14.19.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V325 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTCCACATTCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.14.19.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.14.19.RK.ST.1600_F5 F5 -BLANK174.6F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V326 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGAACGTCTATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6F_F6 F6 -9.9.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V327 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATGCCGGTAATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.9.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.9.19.RK.ST.1100_F7 F7 -9.5.19.RK.ST.1400 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V328 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TGAACCCTATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.5.19.RK.ST.1400 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.5.19.RK.ST.1400_F8 F8 -8.29.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V329 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TTGGACGTCCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.29.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.29.19.RK.ST.1100_F9 F9 -8.28.19.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V330 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATGTAGGCTTAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.28.19.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.28.19.RK.ST.1500_F10 F10 -8.22.19.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V331 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGAGGAGTCGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.22.19.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.22.19.RK.ST.1500_F11 F11 -8.18.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V332 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTCCCACTAGAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.18.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.18.19.RK.ST.1000_F12 F12 -9.16.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V333 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AATTTCCTAACA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.16.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.16.19.RK.ST.700_G1 G1 -11.19.19.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V334 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTGAGGGCAAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.19.19.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.19.19.RK.ST.2100_G2 G2 -12.7.19.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V335 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CACGAAAGCAGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.7.19.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.7.19.RK.ST.2300_G3 G3 -12.4.19.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V336 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TACTGAGCCTCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.4.19.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.4.19.RK.ST.730_G4 G4 -8.30.19.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V337 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCTTCGCAGCAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.30.19.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.30.19.RK.ST.730_G5 G5 -BLANK174.6G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V338 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CAGTCCCTGCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6G_G6 G6 -9.9.19.RK.ST.2045 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V339 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATCAAGATACGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.9.19.RK.ST.2045 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.9.19.RK.ST.2045_G7 G7 -9.1.19.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V340 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AATAAGCAATAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.1.19.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.1.19.RK.ST.900_G8 G8 -8.26.19.RK.ST.745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V341 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCACGCGAGCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.26.19.RK.ST.745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.26.19.RK.ST.745_G9 G9 -8.23.19.RK.ST.1900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V342 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GCATTACTGGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.23.19.RK.ST.1900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.23.19.RK.ST.1900_G10 G10 -8.13.19.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V343 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GTCTCCTCCCTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.13.19.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.13.19.RK.ST.1000_G11 G11 -7.20.19.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V344 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AATAGATGCTGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 7.20.19.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_7.20.19.RK.ST.2100_G12 G12 -9.16.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V345 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATAAACGGACAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.16.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.16.19.RK.ST.1100_H1 H1 -11.19.19.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V346 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis ATATTGGCAGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 11.19.19.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_11.19.19.RK.ST.730_H2 H2 -12.6.19.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V347 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CGTGGCTTTCCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.6.19.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.6.19.RK.ST.2300_H3 H3 -12.4.19.RK.ST.2030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V348 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis GGTGCAGACAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 12.4.19.RK.ST.2030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_12.4.19.RK.ST.2030_H4 H4 -8.30.19.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V349 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CACGCTATTGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.30.19.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.30.19.RK.ST.2300_H5 H5 -BLANK174.6H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V350 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TGATTTAATTGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK174.6H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_BLANK174.6H_H6 H6 -9.10.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V351 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTGAGGCCCTTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.10.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.10.19.RK.ST.1100_H7 H7 -9.7.19.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V352 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TATGGGTAGCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.7.19.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_9.7.19.RK.ST.1200_H8 H8 -8.26.19.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V353 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis CTTAGGCATGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.26.19.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.26.19.RK.ST.1600_H9 H9 -8.20.19.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V354 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis TCCGGACTCCTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.20.19.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.20.19.RK.ST.700_H10 H10 -8.16.19.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V355 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AGTATCATATAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.16.19.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.16.19.RK.ST.800_H11 H11 -8.14.19.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V356 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_174 Sequencing by synthesis AACGCTTCTTAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 8.14.19.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 5 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_174_8.14.19.RK.ST.1100_H12 H12 -6.22.20.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V357 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGACCGACTCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.22.20.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.22.20.RK.ST.800_A1 A1 -5.19.20.RK.ST.2000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V358 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TGGAATTCGGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.19.20.RK.ST.2000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.19.20.RK.ST.2000_A2 A2 -5.28.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V359 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAAGATCTATCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.28.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.28.20.RK.ST.900_A3 A3 -6.2.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V360 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ATCGCCGCCTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.2.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.2.20.RK.ST.1100_A4 A4 -3.14.20.RK.ST.845 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V361 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGTGTCGGATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.14.20.RK.ST.845 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.14.20.RK.ST.845_A5 A5 -4.29.20.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V362 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCAAGCAATACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.29.20.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.29.20.RK.ST.730_A6 A6 -4.30.20.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V363 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGGGAGCTTCGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.30.20.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.30.20.RK.ST.2200_A7 A7 -4.24.20.RK.ST.1545 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V364 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CTGGTAAGTCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.24.20.RK.ST.1545 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.24.20.RK.ST.1545_A8 A8 -4.6.20.RK.ST.815 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V365 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GGACTTCCAGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.6.20.RK.ST.815 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.6.20.RK.ST.815_A9 A9 -BLANK182.10A UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V366 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GGAGGAGCAATA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10A_A10 A10 -4.4.20.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V367 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CATGAACAGTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.4.20.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.4.20.RK.ST.1030_A11 A11 -5.1.20.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V368 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGGTAACCGAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.1.20.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.1.20.RK.ST.700_A12 A12 -6.19.20.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V369 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GGAATCCGATTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.19.20.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.19.20.20.RK.ST.1130_B1 B1 -5.19.20.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V370 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TTCCCACCCATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.19.20.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.19.20.RK.ST.800_B2 B2 -6.3.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V371 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTCCCAGTCCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.3.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.3.20.RK.ST.900_B3 B3 -6.2.20.RK.ST.2300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V372 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGCCAGTCATAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.2.20.RK.ST.2300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.2.20.RK.ST.2300_B4 B4 -3.10.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V373 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTGTAATGTAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.10.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.10.20.RK.ST.1100_B5 B5 -4.27.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V374 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ATACTGAGTGAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.27.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.27.20.RK.ST.1100_B6 B6 -4.3.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V375 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TGTATGCTTCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.3.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.3.20.RK.ST.900_B7 B7 -4.14.20.RK.ST.815 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V376 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAACTCGCTATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.14.20.RK.ST.815 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.14.20.RK.ST.815_B8 B8 -4.8.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V377 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGATATCAGTAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.8.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.8.20.RK.ST.1200_B9 B9 -BLANK182.10B UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V378 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCGTAGTAATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10B_B10 B10 -4.15.20.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V379 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGGGTCCTCTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.15.20.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.15.20.RK.ST.800_B11 B11 -5.1.20.RK.ST.930 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V380 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTCGGGCCGGTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.1.20.RK.ST.930 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.1.20.RK.ST.930_B12 B12 -6.19.20.RK.ST.745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V381 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCCGACCCGATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.19.20.RK.ST.745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.19.20.RK.ST.745_C1 C1 -6.1.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V382 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CCGCATGACCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.1.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.1.20.RK.ST.1100_C2 C2 -5.30.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V383 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CACTAGACCCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.30.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.30.20.RK.ST.1000_C3 C3 -6.4.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V384 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGTAATAACAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.4.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.4.20.RK.ST.1130_C4 C4 -3.13.20.RK.ST.1745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V385 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CTTCTTCGCCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.13.20.RK.ST.1745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.13.20.RK.ST.1745_C5 C5 -4.27.20.RK.ST.730 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V386 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TACACGCTGATG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.27.20.RK.ST.730 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.27.20.RK.ST.730_C6 C6 -4.13.20.RK.ST.1330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V387 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GACGTCCCTCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.13.20.RK.ST.1330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.13.20.RK.ST.1330_C7 C7 -9.14.20.RK.ST.1430 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V388 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TATTCTACATGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 9.14.20.RK.ST.1430 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_9.14.20.RK.ST.1430_C8 C8 -4.8.20.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V389 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAGGCGCCATAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.8.20.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.8.20.RK.ST.800_C9 C9 -BLANK182.10C UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V390 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCAGAGAGGCTA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10C_C10 C10 -4.10.20.RK.ST.830 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V391 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGTTTATCCGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.10.20.RK.ST.830 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.10.20.RK.ST.830_C11 C11 -5.4.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V392 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCTAGACACTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.4.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.4.20.RK.ST.1200_C12 C12 -5.20.0.RK.ST.2145 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V393 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCACTGCTAGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.20.0.RK.ST.2145 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.20.0.RK.ST.2145_D1 D1 -5.29.20.RK.ST.745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V394 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GGTCCTTCCCGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.29.20.RK.ST.745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.29.20.RK.ST.745_D2 D2 -6.5.20.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V395 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGGTAGTTGATC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.5.20.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.5.20.RK.ST.1300_D3 D3 -5.21.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V396 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TGGTTTCGAAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.21.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.21.20.RK.ST.900_D4 D4 -3.11.20.RK.ST.745 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V397 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CCGAAACGGAGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.11.20.RK.ST.745 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.11.20.RK.ST.745_D5 D5 -4.26.20.RK.ST.1239 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V398 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCTCCTAGGCGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.26.20.RK.ST.1239 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.26.20.RK.ST.1239_D6 D6 -4.13.20.RK.ST.1045 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V399 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTTTGCTCGAGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.13.20.RK.ST.1045 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.13.20.RK.ST.1045_D7 D7 -4.21.20.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V400 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCGATAAGTAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.21.20.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.21.20.RK.ST.2100_D8 D8 -4.9.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V401 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AATCTCTATAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.9.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.9.20.RK.ST.1500_D9 D9 -BLANK182.10D UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V402 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAGTCCGTTGCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10D_D10 D10 -4.22.20.RK.ST.1640 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V403 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAACCACCAACG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.22.20.RK.ST.1640 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.22.20.RK.ST.1640_D11 D11 -5.5.20.RK.ST.630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V404 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCGTCTGATATT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.5.20.RK.ST.630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.5.20.RK.ST.630_D12 D12 -5.20.20.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V405 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ACATCAGGTCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.20.20.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.20.20.RK.ST.1300_E1 E1 -5.25.20.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V406 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CAGACCGGACGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.25.20.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.25.20.RK.ST.1300_E2 E2 -5.26.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V407 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGTTATTCTAGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.26.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.26.20.RK.ST.1130_E3 E3 -3.16.20.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V408 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTAGGTGCTTAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.16.20.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.16.20.RK.ST.700_E4 E4 -3.15.20.RK.ST.1310 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V409 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTGGGCGGCCCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.15.20.RK.ST.1310 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.15.20.RK.ST.1310_E5 E5 -4.26.20.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V410 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGTCTTAAAGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.26.20.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.26.20.RK.ST.2100_E6 E6 -4.18.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V411 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTCTGACGGTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.18.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.18.20.RK.ST.1100_E7 E7 -4.20.20.RK.ST.2130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V412 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CCATAGGAGGCG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.20.20.RK.ST.2130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.20.20.RK.ST.2130_E8 E8 -4.23.20.RK.ST.1520 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V413 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTGGCGCATGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.23.20.RK.ST.1520 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.23.20.RK.ST.1520_E9 E9 -BLANK182.10E UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V414 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CAACTTAATGTT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10E_E10 E10 -4.17.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V415 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGCGACCTCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.17.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.17.20.RK.ST.900_E11 E11 -5.5.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V416 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CCAGCGCTTCAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.5.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.5.20.RK.ST.1200_E12 E12 -5.23.20.RK.ST.2330 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V417 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AGCTATGTATGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.23.20.RK.ST.2330 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.23.20.RK.ST.2330_F1 F1 -5.25.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V418 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TTCCGAATCGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.25.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.25.20.RK.ST.1100_F2 F2 -5.26.20.RK.ST.2200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V419 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CACATTCTATAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.26.20.RK.ST.2200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.26.20.RK.ST.2200_F3 F3 -3.16.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V420 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGGCGATGAAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.16.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.16.20.RK.ST.1600_F4 F4 -3.17.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V421 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GTTGGGATCCTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.17.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.17.20.RK.ST.1100_F5 F5 -4.2.20.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V422 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAATCATGTAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.2.20.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.2.20.RK.ST.2100_F6 F6 -4.19.20.RK.ST.1645 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V423 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAGTTCCATTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.19.20.RK.ST.1645 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.19.20.RK.ST.1645_F7 F7 -4.19.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V424 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCCGCGGGATCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.19.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.19.20.RK.ST.1100_F8 F8 -4.16.20.RK.ST.1600 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V425 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CGTGTTATGTGG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.16.20.RK.ST.1600 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.16.20.RK.ST.1600_F9 F9 -BLANK182.10F UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V426 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CTGTACTTCTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10F_F10 F10 -5.6.20.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V427 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGGCATGCTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.6.20.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.6.20.RK.ST.1800_F11 F11 -5.2.20.RK.ST.1300 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V428 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AATAGTCGTGAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.2.20.RK.ST.1300 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.2.20.RK.ST.1300_F12 F12 -6.6.20.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V429 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AATGACCTCGTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 6.6.20.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_6.6.20.RK.ST.1700_G1 G1 -5.25.20.RK.ST.2100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V430 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCATGTCGAAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.25.20.RK.ST.2100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.25.20.RK.ST.2100_G2 G2 -5.26.20.RK.ST.1700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V431 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCGTTAACCCAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.26.20.RK.ST.1700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.26.20.RK.ST.1700_G3 G3 -3.12.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V432 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GACCACTGCTGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.12.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.12.20.RK.ST.1000_G4 G4 -3.11.20.RK.ST.700 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V433 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TTCACGCGCCCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.11.20.RK.ST.700 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.11.20.RK.ST.700_G5 G5 -4.28.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V434 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TAGGCGGTAGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.28.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.28.20.RK.ST.1200_G6 G6 -4.1.20.RK.ST.1200 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V435 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ACACTCATTACT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.1.20.RK.ST.1200 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.1.20.RK.ST.1200_G7 G7 -4.12.20.RK.ST.1130 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V436 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCTTAAGATTTG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.12.20.RK.ST.1130 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.12.20.RK.ST.1130_G8 G8 -4.5.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V437 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AAGTAGGAAGGA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.5.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.5.20.RK.ST.1500_G9 G9 -BLANK182.10G UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V438 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GGCCCTGTGGGC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10G_G10 G10 -5.3.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V439 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ATCCATGAGCGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.3.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.3.20.RK.ST.900_G11 G11 -5.8.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V440 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAGGCCTCGGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.8.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.8.20.RK.ST.900_G12 G12 -5.24.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V441 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AAGGGTTAGTCT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.24.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.24.20.RK.ST.1100_H1 H1 -5.28.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V442 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ACGCGAACTAAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.28.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.28.20.RK.ST.1100_H2 H2 -5.22.20.RK.ST.800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V443 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TTCGACTAATAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.22.20.RK.ST.800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.22.20.RK.ST.800_H3 H3 -3.14.20.RK.ST.1630 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V444 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis AATCATTTGTAA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 3.14.20.RK.ST.1630 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_3.14.20.RK.ST.1630_H4 H4 -4.29.20.RK.ST.1030 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V445 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TATGCTCTCTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.29.20.RK.ST.1030 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.29.20.RK.ST.1030_H5 H5 -4.30.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V446 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis TCATTCCACTCA GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.30.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.30.20.RK.ST.1100_H6 H6 -4.1.20.RK.ST.1800 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V447 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CAGAAATGTGTC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.1.20.RK.ST.1800 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.1.20.RK.ST.1800_H7 H7 -4.10.20.RK.ST.1100 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V448 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis CTTATAGAGAAG GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.10.20.RK.ST.1100 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.10.20.RK.ST.1100_H8 H8 -4.5.20.RK.ST.1000 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V449 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis ATGCGCCCGTAT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 4.5.20.RK.ST.1000 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_4.5.20.RK.ST.1000_H9 H9 -BLANK182.10H UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V450 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GCATCGTCTGGT GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 BLANK182.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_BLANK182.10H_H10 H10 -5.4.20.RK.ST.900 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V451 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GAGGCAAACGCC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.4.20.RK.ST.900 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.4.20.RK.ST.900_H11 H11 -5.8.20.RK.ST.1500 UCSDMI ABTX Illumina MiSeq 1 Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V452 Illumina UCSDMI 2023/02/24 230224_M05314_0347_000000000-KVMH3_SMPL1_S1_L001 230224_M05314_0347_000000000-KVMH3 ABTX_20230227_11052_Plate_182 Sequencing by synthesis GACTTGGTAAAC GT GTGTGYCAGCMGCCGCGGTAA not applicable not applicable 1266015 5.8.20.RK.ST.1500 FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT SF 12282022 7 Echo 550 ABTX_20230227_11052 16S rRNA V4 108379Z not applicable not applicable RNBL1950 ABTX_20230227_11052_Plate_182_5.8.20.RK.ST.1500_H12 H12 diff --git a/qp_klp/tests/RunInfo.xml b/qp_klp/tests/RunInfo.xml deleted file mode 100644 index 38d63116..00000000 --- a/qp_klp/tests/RunInfo.xml +++ /dev/null @@ -1,16 +0,0 @@ - - - - 000000000-XXXXX - M09999 - 170523 - - - - - - - - - diff --git a/qp_klp/tests/bad_mapping_file.txt b/qp_klp/tests/bad_mapping_file.txt deleted file mode 100644 index 02631c1f..00000000 --- a/qp_klp/tests/bad_mapping_file.txt +++ /dev/null @@ -1,385 +0,0 @@ -sample_name barcode center_name center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id -11.1.21.RK.FH TATGCCAGAGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.FH_C4 C4 -11.1.21.RK.LH ATCTAGTGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.LH_D4 D4 -11.1.21.RK.RH TTCCTTAGTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.RH_B4 B4 -11.10.21.RK.FH GTGGAGTCTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.FH_D1 D1 -11.10.21.RK.LH TGATGTGCTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.LH_E1 E1 -11.10.21.RK.RH TGACTAATGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.RH_C1 C1 -11.12.21.RK.FH GTAGTAGACCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.FH_E2 E2 -11.12.21.RK.LH CCGGACAAGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.LH_F2 F2 -11.12.21.RK.RH ACCTTACACCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.RH_D2 D2 -11.13.21.RK.FH CGCGCCTTAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.FH_A5 A5 -11.13.21.RK.LH CGTCCGTATGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.LH_B5 B5 -11.13.21.RK.RH GACTCTGCTCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.RH_H4 H4 -11.17.21.RK.FH TCCATACCGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.FH_A2 A2 -11.17.21.RK.LH ATGCTGCAACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.LH_B2 B2 -11.17.21.RK.RH CGGGACACCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.RH_C2 C2 -11.2.21.RK.FH TGTGCACGCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.FH_F1 F1 -11.2.21.RK.LH CTATGTATTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.LH_H1 H1 -11.2.21.RK.RH GGTGAGCAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.RH_G1 G1 -11.3.21.RK.FH TAAATATACCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.FH_G2 G2 -11.3.21.RK.LH ACTCCCGTGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.LH_H2 H2 -11.3.21.RK.RH CCTAACGGTCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.RH_A4 A4 -11.4.21.RK.FH CTCGCCCTCGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.FH_E4 E4 -11.4.21.RK.LH TACTAACGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.LH_F4 F4 -11.4.21.RK.RH GTCGTCCAAATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.RH_G4 G4 -11.5.21.RK.FH GTCATGCTCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.FH_H5 H5 -11.5.21.RK.LH GCGATCACACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.LH_F5 F5 -11.5.21.RK.RH TGCACAGTCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.RH_G5 G5 -11.6.21.RK.FH TATGGTACCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.6.21.RK.FH_A6 A6 -11.6.21.RK.LH ACGTGAGGAACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.6.21.RK.LH_B6 B6 -11.6.21.RK.RH AAGAACTCATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.6.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.6.21.RK.RH_C6 C6 -11.7.21.RK.FH ACGCTTAACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.7.21.RK.FH_D5 D5 -11.7.21.RK.LH CGTTTGGAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.7.21.RK.LH_C5 C5 -11.7.21.RK.RH TCTCTTTCGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.7.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.7.21.RK.RH_E5 E5 -11.8.21.RK.FH AGCCTTCGTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.8.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.8.21.RK.FH_A1 A1 -11.8.21.RK.LH CGTATAAATGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.8.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.8.21.RK.LH_B1 B1 -5.1.22.RK.FH CAAATTCGGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V72 GT 1331807 5.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.1.22.RK.FH_A4 A4 -5.1.22.RK.LH GTTAACTTACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V154 GT 1331807 5.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.1.22.RK.LH_H2 H2 -5.1.22.RK.RH CTCAGCGGGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V142 GT 1331807 5.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.1.22.RK.RH_G2 G2 -5.10.22.RK.RH CGCGCAAGTATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V81 GT 1331807 5.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.10.22.RK.RH_B1 B1 -5.11.22.RK.FH CCTCCGTCATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.11.22.RK.FH_B12 B12 -5.11.22.RK.LH AGATGTCCGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V8 GT 1331807 5.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.11.22.RK.LH_C12 C12 -5.11.22.RK.RH TACAGCGCATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V67 GT 1331807 5.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.11.22.RK.RH_H11 H11 -5.12.22.RK.FH GTTTGAAACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V55 GT 1331807 5.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.12.22.RK.FH_G11 G11 -5.12.22.RK.LH GTCAGGTGCGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V31 GT 1331807 5.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.12.22.RK.LH_E11 E11 -5.12.22.RK.RH TTCCAATACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V43 GT 1331807 5.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.12.22.RK.RH_F11 F11 -5.13.22.RK.FH GGAGAACGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.13.22.RK.FH_B8 B8 -5.13.22.RK.LH GGTAGTTCATAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V63 GT 1331807 5.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.13.22.RK.LH_H7 H7 -5.13.22.RK.RH ACCTACTTGTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.13.22.RK.RH_A8 A8 -5.14.22.RK.FH CCTCACTAGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V15 GT 1331807 5.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.14.22.RK.FH_D7 D7 -5.14.22.RK.LH TCCACAGGGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.14.22.RK.LH_B7 B7 -5.14.22.RK.RH AGATCGTGCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.14.22.RK.RH_C7 C7 -5.15.22.RK.FH TAGTTCGGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V27 GT 1331807 5.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.15.22.RK.FH_E7 E7 -5.15.22.RK.LH ACTAAAGCAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V39 GT 1331807 5.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.15.22.RK.LH_F7 F7 -5.15.22.RK.RH CTTGCTCATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V51 GT 1331807 5.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.15.22.RK.RH_G7 G7 -5.16.22.RK.FH ACGACAACGGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V52 GT 1331807 5.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.16.22.RK.FH_G8 G8 -5.16.22.RK.LH TAGGAACTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V40 GT 1331807 5.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.16.22.RK.LH_F8 F8 -5.16.22.RK.RH CGATGAATATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V64 GT 1331807 5.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.16.22.RK.RH_H8 H8 -5.17.22.RK.FH TTAATGGATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V28 GT 1331807 5.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.17.22.RK.FH_E8 E8 -5.17.22.RK.LH CTAATCAGAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V16 GT 1331807 5.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.17.22.RK.LH_D8 D8 -5.17.22.RK.RH AATTAATATGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.17.22.RK.RH_C8 C8 -5.18.22.RK.FH AGCGCGGCGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V19 GT 1331807 5.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.18.22.RK.FH_D11 D11 -5.18.22.RK.LH GCAACGAACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V7 GT 1331807 5.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.18.22.RK.LH_C11 C11 -5.18.22.RK.RH GTTCTAAGGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V65 GT 1331807 5.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.18.22.RK.RH_H9 H9 -5.19.22.RK.FH CTAGCGTGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V53 GT 1331807 5.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.19.22.RK.FH_G9 G9 -5.19.22.RK.LH CATGTCTTCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.19.22.RK.LH_A11 A11 -5.19.22.RK.RH TAATCCATAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.19.22.RK.RH_B11 B11 -5.2.22.RK.FH TACGGTCTGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V84 GT 1331807 5.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.2.22.RK.FH_B4 B4 -5.2.22.RK.LH ACGTATTCGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V96 GT 1331807 5.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.2.22.RK.LH_C4 C4 -5.2.22.RK.RH TTACTTATCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V108 GT 1331807 5.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.2.22.RK.RH_D4 D4 -5.20.22.RK.FH TCAAGTCCGCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V29 GT 1331807 5.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.20.22.RK.FH_E9 E9 -5.20.22.RK.LH CTACTCCACGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V17 GT 1331807 5.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.20.22.RK.LH_D9 D9 -5.20.22.RK.RH GTCCGTCCTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V41 GT 1331807 5.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.20.22.RK.RH_F9 F9 -5.21.22.RK.FH CCTACCATTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.21.22.RK.FH_B9 B9 -5.21.22.RK.LH ACTGTGACGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.21.22.RK.LH_A9 A9 -5.21.22.RK.RH CATTTCGCACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V5 GT 1331807 5.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.21.22.RK.RH_C9 C9 -5.22.22.RK.FH GGCGTAACGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V70 GT 1331807 5.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.22.22.RK.FH_A2 A2 -5.22.22.RK.LH GATCTAATCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V94 GT 1331807 5.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.22.22.RK.LH_C2 C2 -5.22.22.RK.RH AATACAGACCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V82 GT 1331807 5.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.22.22.RK.RH_B2 B2 -5.23.22.RK.FH GATGCCTAATGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V132 GT 1331807 5.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.23.22.RK.FH_F4 F4 -5.23.22.RK.LH AGTTGTAGTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V120 GT 1331807 5.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.23.22.RK.LH_E4 E4 -5.23.22.RK.RH TTAGTTTGTCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V144 GT 1331807 5.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.23.22.RK.RH_G4 G4 -5.24.22.RK.FH CCGCAGCCGCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V106 GT 1331807 5.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.24.22.RK.FH_D2 D2 -5.24.22.RK.LH GAACCGTGCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V118 GT 1331807 5.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.24.22.RK.LH_E2 E2 -5.24.22.RK.RH ACTAAGTACCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V130 GT 1331807 5.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.24.22.RK.RH_F2 F2 -5.27.22.RK.FH ACGGTACCCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.27.22.RK.FH_A6 A6 -5.27.22.RK.LH CGACACGGAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.27.22.RK.LH_B6 B6 -5.27.22.RK.RH GCGTTTGCTAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.27.22.RK.RH_C6 C6 -5.29.22.RK.FH CGTTCTGGTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V26 GT 1331807 5.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.29.22.RK.FH_E6 E6 -5.29.22.RK.LH CCGGCGACAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V14 GT 1331807 5.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.29.22.RK.LH_D6 D6 -5.29.22.RK.RH ATCGTAGTGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V38 GT 1331807 5.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.29.22.RK.RH_F6 F6 -5.3.22.RK.FH GTACGTCACTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V133 GT 1331807 5.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.3.22.RK.FH_F5 F5 -5.3.22.RK.LH GCCGCCAGGGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V157 GT 1331807 5.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.3.22.RK.LH_H5 H5 -5.3.22.RK.RH CCGGCCGCGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V145 GT 1331807 5.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.3.22.RK.RH_G5 G5 -5.30.22.RK.FH TTAAGTTAAGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V61 GT 1331807 5.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.30.22.RK.FH_H5 H5 -5.30.22.RK.LH TGCGGCGTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V49 GT 1331807 5.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.30.22.RK.LH_G5 G5 -5.30.22.RK.RH GCATAAACGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V37 GT 1331807 5.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.30.22.RK.RH_F5 F5 -5.31.22.RK.FH CGCTGTGGATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V50 GT 1331807 5.31.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.31.22.RK.FH_G6 G6 -5.31.22.RK.LH AGCCGCGGGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V62 GT 1331807 5.31.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.31.22.RK.LH_H6 H6 -5.31.22.RK.RH TGAGTCATTGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.31.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.31.22.RK.RH_A7 A7 -5.4.22.RK.FH GACGTTAAGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V97 GT 1331807 5.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.4.22.RK.FH_C5 C5 -5.4.22.RK.LH AGGGACTTCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V121 GT 1331807 5.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.4.22.RK.LH_E5 E5 -5.4.22.RK.RH ATGGGACCTTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V109 GT 1331807 5.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.4.22.RK.RH_D5 D5 -5.5.22.RK.FH AGGGTGACTTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V156 GT 1331807 5.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.5.22.RK.FH_H4 H4 -5.5.22.RK.LH TTGTGTCTCCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V73 GT 1331807 5.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.5.22.RK.LH_A5 A5 -5.5.22.RK.RH TTCAGTTCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V85 GT 1331807 5.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.5.22.RK.RH_B5 B5 -5.6.22.RK.FH ACGGCGTTATGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V117 GT 1331807 5.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.6.22.RK.FH_E1 E1 -5.6.22.RK.LH AAGGCGCTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V93 GT 1331807 5.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.6.22.RK.LH_C1 C1 -5.6.22.RK.RH CGCAATGAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V105 GT 1331807 5.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.6.22.RK.RH_D1 D1 -5.7.22.RK.FH GCTGCGTATACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V141 GT 1331807 5.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.7.22.RK.FH_G1 G1 -5.7.22.RK.LH GAGAAGCTTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V153 GT 1331807 5.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.7.22.RK.LH_H1 H1 -5.7.22.RK.RH CATTTGACGACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V129 GT 1331807 5.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.7.22.RK.RH_F1 F1 -5.8.22.RK.FH AACTCAATAGCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V44 GT 1331807 5.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.8.22.RK.FH_F12 F12 -5.8.22.RK.LH TTGAACAAGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V32 GT 1331807 5.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.8.22.RK.LH_E12 E12 -5.8.22.RK.RH TAGCAGTTGCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V20 GT 1331807 5.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.8.22.RK.RH_D12 D12 -5.9.22.RK.FH ACCTCAGTCAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V56 GT 1331807 5.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.9.22.RK.FH_G12 G12 -5.9.22.RK.LH CCTCGCATGACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V69 GT 1331807 5.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_5.9.22.RK.LH_A1 A1 -5.9.22.RK.RH AACAGTAAACAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 5.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_5.9.22.RK.RH_A12 A12 -6.1.22.RK.FH GCATATGCACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V13 GT 1331807 6.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.1.22.RK.FH_D5 D5 -6.1.22.RK.LH GCTGCCCACCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.1.22.RK.LH_C5 C5 -6.1.22.RK.RH GTCACTCCGAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V25 GT 1331807 6.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.1.22.RK.RH_E5 E5 -6.10.22.RK.FH ACTCTTACTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.10.22.RK.FH_H12 H12 -6.10.22.RK.LH TCGTTATTCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V9 GT 1331807 6.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.10.22.RK.LH_D1 D1 -6.10.22.RK.RH TGTCAAAGTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.10.22.RK.RH_G12 G12 -6.11.22.RK.FH GTGCCGGCCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.11.22.RK.FH_B2 B2 -6.11.22.RK.LH CTTGGAGGCTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.11.22.RK.LH_A2 A2 -6.11.22.RK.RH TCATTAGCGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V57 GT 1331807 6.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.11.22.RK.RH_H1 H1 -6.12.22.RK.FH AGCTCTAGAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.12.22.RK.FH_C3 C3 -6.12.22.RK.LH CCTTGACCGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.12.22.RK.LH_B3 B3 -6.12.22.RK.RH TATCATATTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.12.22.RK.RH_A3 A3 -6.13.22.RK.FH GAACCAGTACTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.13.22.RK.FH_H9 H9 -6.13.22.RK.LH CTTATTAAACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.13.22.RK.LH_G9 G9 -6.13.22.RK.RH GCCTCTACGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.13.22.RK.RH_A10 A10 -6.14.22.RK.FH TTACACAAAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.14.22.RK.FH_F9 F9 -6.14.22.RK.LH TGAGACCCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.14.22.RK.LH_E9 E9 -6.14.22.RK.RH AATCTTGCGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.14.22.RK.RH_D9 D9 -6.15.22.RK.FH AATTCACCTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.15.22.RK.FH_A12 A12 -6.15.22.RK.LH GAGATACAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.15.22.RK.LH_C12 C12 -6.15.22.RK.RH TAATCGGTGCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.15.22.RK.RH_B12 B12 -6.16.22.RK.FH AGAGCCAAGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.16.22.RK.FH_F12 F12 -6.16.22.RK.LH CACGCAGTCTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.16.22.RK.LH_E12 E12 -6.16.22.RK.RH TATTGCAGCAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.16.22.RK.RH_D12 D12 -6.17.22.RK.FH AATAACTAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.17.22.RK.FH_D11 D11 -6.17.22.RK.LH ATTACGTATCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.17.22.RK.LH_E11 E11 -6.17.22.RK.RH GAAATCTTGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.17.22.RK.RH_C11 C11 -6.18.22.RK.FH CAAGTGAAGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.18.22.RK.FH_B10 B10 -6.18.22.RK.LH CTTGATTCTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.18.22.RK.LH_C10 C10 -6.18.22.RK.RH AGGATCAGGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.18.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.18.22.RK.RH_D10 D10 -6.19.22.RK.FH TATCCAAGCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.19.22.RK.FH_F11 F11 -6.19.22.RK.LH TATTTGATTGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.19.22.RK.LH_G11 G11 -6.19.22.RK.RH GTGCCATAATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.19.22.RK.RH_H11 H11 -6.2.22.RK.FH ACCGAACAATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.2.22.RK.FH_A5 A5 -6.2.22.RK.LH CCAACCCAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V60 GT 1331807 6.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.2.22.RK.LH_H4 H4 -6.2.22.RK.RH TCGAGAGTTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.2.22.RK.RH_B5 B5 -6.20.22.RK.FH TCATGGCCTCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V22 GT 1331807 6.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.20.22.RK.FH_E2 E2 -6.20.22.RK.LH AGAGGGTGATCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.20.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.20.22.RK.LH_C2 C2 -6.20.22.RK.RH GGATACTCGCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V10 GT 1331807 6.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.20.22.RK.RH_D2 D2 -6.21.22.RK.FH ATACATGCAAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.21.22.RK.FH_D7 D7 -6.21.22.RK.LH TGATATCGTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.21.22.RK.LH_C7 C7 -6.21.22.RK.RH GGTTGCCCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.21.22.RK.RH_B7 B7 -6.22.22.RK.FH GGTTCATGAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.22.22.RK.FH_G7 G7 -6.22.22.RK.LH GTTGATACGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.22.22.RK.LH_E7 E7 -6.22.22.RK.RH GAAGAGGGTTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.22.22.RK.RH_F7 F7 -6.23.22.RK.FH AATGGTTCAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.23.22.RK.FH_H8 H8 -6.23.22.RK.LH.A TAACAATAATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.23.22.RK.LH_G8 G8 -6.23.22.RK.LH.B GCTCGAAGATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.23.22.RK.LH_G10 G10 -6.24.22.RK.FH ACGACGCATTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.24.22.RK.FH_F10 F10 -6.24.22.RK.RH ACTTGGTGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.24.22.RK.RH_E10 E10 -6.25.22.RK.FH ACTACTGAGGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.25.22.RK.FH_A11 A11 -6.25.22.RK.LH CACGTTTATTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.25.22.RK.LH_B11 B11 -6.25.22.RK.RH CGCACCCATACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.25.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.25.22.RK.RH_H10 H10 -6.26.22.RK.FH CGGTGACCTACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.26.22.RK.FH_C8 C8 -6.26.22.RK.LH CTTAGTGCAGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.26.22.RK.LH_D8 D8 -6.26.22.RK.RH.A GTCAACGCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.26.22.RK.RH_E8 E8 -6.26.22.RK.RH.B TGAGTGGTCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.26.22.RK.RH_F8 F8 -6.27.22.RK.FH CATATAGCCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.27.22.RK.FH_B8 B8 -6.27.22.RK.LH TGAGTATGAGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.27.22.RK.LH_H7 H7 -6.27.22.RK.RH AATTTAGGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.27.22.RK.RH_A8 A8 -6.28.22.RK.FH TTACTGTGGCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.28.22.RK.FH_G6 G6 -6.28.22.RK.LH TACGGATTATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.28.22.RK.LH_D6 D6 -6.28.22.RK.RH ACATACTGAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.28.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.28.22.RK.RH_E6 E6 -6.29.22.RK.FH GCCTATGAGATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.29.22.RK.FH_B9 B9 -6.29.22.RK.LH GACTCAACCAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.29.22.RK.LH_A9 A9 -6.29.22.RK.RH AATGCGCGTATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.29.22.RK.RH_C9 C9 -6.3.22.RK.FH ATGTGCTGCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V34 GT 1331807 6.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.3.22.RK.FH_F2 F2 -6.3.22.RK.LH CGCCGTACTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V58 GT 1331807 6.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.3.22.RK.LH_H2 H2 -6.3.22.RK.RH CCACGAGCAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V46 GT 1331807 6.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.3.22.RK.RH_G2 G2 -6.30.22.RK.FH TACCGAAGGTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.30.22.RK.FH_H6 H6 -6.30.22.RK.LH TACAATATCTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.30.22.RK.LH_A7 A7 -6.30.22.RK.RH CAAACGCACTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_6.30.22.RK.RH_F6 F6 -6.4.22.RK.FH CAGGAACCAGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V36 GT 1331807 6.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.4.22.RK.FH_F4 F4 -6.4.22.RK.LH CAAAGGAGCCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V48 GT 1331807 6.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.4.22.RK.LH_G4 G4 -6.4.22.RK.RH GTTGGACGAAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V24 GT 1331807 6.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.4.22.RK.RH_E4 E4 -6.5.22.RK.FH CAAACTGCGTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.5.22.RK.FH_B4 B4 -6.5.22.RK.LH CTGACACGAATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.5.22.RK.LH_C4 C4 -6.5.22.RK.RH AGCAGTGCGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V12 GT 1331807 6.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.5.22.RK.RH_D4 D4 -6.6.22.RK.FH GCGTGCCCGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V47 GT 1331807 6.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.6.22.RK.FH_G3 G3 -6.6.22.RK.LH CTATATTATCCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.6.22.RK.LH_A4 A4 -6.6.22.RK.RH TAAACCTGGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V59 GT 1331807 6.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.6.22.RK.RH_H3 H3 -6.7.22.RK.FH CAATCATAGGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V23 GT 1331807 6.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.7.22.RK.FH_E3 E3 -6.7.22.RK.LH AATGTTCAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V11 GT 1331807 6.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.7.22.RK.LH_D3 D3 -6.7.22.RK.RH CCGATAAAGGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V35 GT 1331807 6.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.7.22.RK.RH_F3 F3 -6.8.22.RK.FH CTACAGGGTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.8.22.RK.FH_A1 A1 -6.8.22.RK.LH TTCGATGCCGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.8.22.RK.LH_C1 C1 -6.8.22.RK.RH GTTCATTAAACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 6.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.8.22.RK.RH_B1 B1 -6.9.22.RK.FH TCAGACCAACTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V45 GT 1331807 6.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.9.22.RK.FH_G1 G1 -6.9.22.RK.LH ATATGTTCTCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V33 GT 1331807 6.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.9.22.RK.LH_F1 F1 -6.9.22.RK.RH ACTCTGTAATTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V21 GT 1331807 6.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_6.9.22.RK.RH_E1 E1 -9.1.22.RK.FH AGAATCCACCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V116 GT 1331807 9.1.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.1.22.RK.FH_D12 D12 -9.1.22.RK.LH TGACAGAATCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V68 GT 1331807 9.1.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_9.1.22.RK.LH_H12 H12 -9.1.22.RK.RH TCGTTGGGACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V164 GT 1331807 9.1.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.1.22.RK.RH_H12 H12 -9.10.22.RK.FH AGTGCAGGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V138 GT 1331807 9.10.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.10.22.RK.FH_F10 F10 -9.10.22.RK.LH AGTGTTTCGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V126 GT 1331807 9.10.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.10.22.RK.LH_E10 E10 -9.10.22.RK.RH GTTGCTGAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V150 GT 1331807 9.10.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.10.22.RK.RH_G10 G10 -9.11.22.RK.FH TTGCCGCTCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V89 GT 1331807 9.11.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.11.22.RK.FH_B9 B9 -9.11.22.RK.LH CCAGGACAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V77 GT 1331807 9.11.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.11.22.RK.LH_A9 A9 -9.11.22.RK.RH CCACAACGATCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V101 GT 1331807 9.11.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.11.22.RK.RH_C9 C9 -9.12.22.RK.FH ACACACCCTGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V159 GT 1331807 9.12.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.12.22.RK.FH_H7 H7 -9.12.22.RK.LH AGATTCGCTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V88 GT 1331807 9.12.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.12.22.RK.LH_B8 B8 -9.12.22.RK.RH AACTTTCAGGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V76 GT 1331807 9.12.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.12.22.RK.RH_A8 A8 -9.13.22.RK.FH CATAAGGGAGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V201 GT 1331807 9.13.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.13.22.RK.FH_D1 D1 -9.13.22.RK.LH TATATAGTATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V189 GT 1331807 9.13.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.13.22.RK.LH_C1 C1 -9.13.22.RK.RH GTGCAACCAATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V213 GT 1331807 9.13.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.13.22.RK.RH_E1 E1 -9.14.22.RK.FH GAGCCATCTGTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V103 GT 1331807 9.14.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.14.22.RK.FH_C11 C11 -9.14.22.RK.LH ATTTCCGCTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V127 GT 1331807 9.14.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.14.22.RK.LH_E11 E11 -9.14.22.RK.RH TTCCACACGTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V115 GT 1331807 9.14.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.14.22.RK.RH_D11 D11 -9.15.22.RK.FH AAGTCACACACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V111 GT 1331807 9.15.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.15.22.RK.FH_D7 D7 -9.15.22.RK.LH CCGAGGTATAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V87 GT 1331807 9.15.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.15.22.RK.LH_B7 B7 -9.15.22.RK.RH TTAACAAGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V99 GT 1331807 9.15.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.15.22.RK.RH_C7 C7 -9.16.22.RK.FH TCGCTACAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V134 GT 1331807 9.16.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.16.22.RK.FH_F6 F6 -9.16.22.RK.LH CGGCCAGAAGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V122 GT 1331807 9.16.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.16.22.RK.LH_E6 E6 -9.16.22.RK.RH TCCGATAATCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V110 GT 1331807 9.16.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.16.22.RK.RH_D6 D6 -9.17.22.RK.FH ATTATGATTATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V146 GT 1331807 9.17.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.17.22.RK.FH_G6 G6 -9.17.22.RK.LH AACCACTAACCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V75 GT 1331807 9.17.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.17.22.RK.LH_A7 A7 -9.17.22.RK.RH GCCACCGCCGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V158 GT 1331807 9.17.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.17.22.RK.RH_H6 H6 -9.19.22.RK.FH CAATGTAGACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V74 GT 1331807 9.19.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.19.22.RK.FH_A6 A6 -9.19.22.RK.LH CCGCGTCTCAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V86 GT 1331807 9.19.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.19.22.RK.LH_B6 B6 -9.19.22.RK.RH TGGTGGAGTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V98 GT 1331807 9.19.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.19.22.RK.RH_C6 C6 -9.2.22.RK.FH GCCTACTCTCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V251 GT 1331807 9.2.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.2.22.RK.FH_H3 H3 -9.2.22.RK.LH CTCCGAACAACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V168 GT 1331807 9.2.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.2.22.RK.LH_A4 A4 -9.2.22.RK.RH CCACTGCCCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V180 GT 1331807 9.2.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.2.22.RK.RH_B4 B4 -9.20.22.RK.FH ACACCGCACAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V151 GT 1331807 9.20.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.20.22.RK.FH_G11 G11 -9.20.22.RK.LH CAGCCCTACCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V163 GT 1331807 9.20.22.RK,LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.20.22.RK,LH_H11 H11 -9.20.22.RK.RH GTACTCGAACCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V139 GT 1331807 9.20.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.20.22.RK.RH_F11 F11 -9.21.22.RK.FH ATAGTCCTTTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V136 GT 1331807 9.21.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.21.22.RK.FH_F8 F8 -9.21.22.RK.LH TATAGGCTCCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V160 GT 1331807 9.21.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.21.22.RK.LH_H8 H8 -9.21.22.RK.RH TCTTATAACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V148 GT 1331807 9.21.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.21.22.RK.RH_G8 G8 -9.22.22.RK.FH CCGGCTTATGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V135 GT 1331807 9.22.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.22.22.RK.FH_F7 F7 -9.22.22.RK.LH CGAATACTGACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V147 GT 1331807 9.22.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.22.22.RK.LH_G7 G7 -9.22.22.RK.RH TGGCAGCGAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V123 GT 1331807 9.22.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.22.22.RK.RH_E7 E7 -9.23.22.RK.FH GAAGTAGCGAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V112 GT 1331807 9.23.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.23.22.RK.FH_D8 D8 -9.23.22.RK.LH GTGAATGTTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V124 GT 1331807 9.23.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.23.22.RK.LH_E8 E8 -9.23.22.RK.RH AACCGCATAAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V100 GT 1331807 9.23.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.23.22.RK.RH_C8 C8 -9.24.22.RK.FH GATATACCAGTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V104 GT 1331807 9.24.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.24.22.RK.FH_C12 C12 -9.24.22.RK.LH CTATCTCCTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V92 GT 1331807 9.24.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.24.22.RK.LH_B12 B12 -9.24.22.RK.RH TCCGCCTAGTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V80 GT 1331807 9.24.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.24.22.RK.RH_A12 A12 -9.25.22.RK.FH ATAGGAATAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V140 GT 1331807 9.25.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.25.22.RK.FH_F12 F12 -9.25.22.RK.LH CAAACCTATGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V128 GT 1331807 9.25.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.25.22.RK.LH_E12 E12 -9.26.22.RK.FH GTGTCGAGGGCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V114 GT 1331807 9.26.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.26.22.RK.FH_D10 D10 -9.26.22.RK.LH AGTTCTCATTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V102 GT 1331807 9.26.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.26.22.RK.LH_C10 C10 -9.26.22.RK.RH AGACTTCTCAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V90 GT 1331807 9.26.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.26.22.RK.RH_B10 B10 -9.27.22.RK.FH GCGCGGCGTTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V78 GT 1331807 9.27.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.27.22.RK.FH_A10 A10 -9.27.22.RK.LH ATAATTGCCGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V161 GT 1331807 9.27.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.27.22.RK.LH_H9 H9 -9.27.22.RK.RH TAAGGTCGATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V149 GT 1331807 9.27.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.27.22.RK.RH_G9 G9 -9.29.22.RK.FH CTAGAGCTCCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V249 GT 1331807 9.29.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.29.22.RK.FH_H1 H1 -9.29.22.RK.LH TACTGTACTGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V237 GT 1331807 9.29.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.29.22.RK.LH_G1 G1 -9.29.22.RK.RH CTCACCTAGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V225 GT 1331807 9.29.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.29.22.RK.RH_F1 F1 -9.3.22.RK.FH ACAGTTGTACGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V203 GT 1331807 9.3.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.3.22.RK.FH_D3 D3 -9.3.22.RK.LH ATTTACAATTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V179 GT 1331807 9.3.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.3.22.RK.LH_B3 B3 -9.3.22.RK.RH GTCACGGACATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V191 GT 1331807 9.3.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.3.22.RK.RH_C3 C3 -9.30.22.RK.FH GTTTGGCCACAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V177 GT 1331807 9.30.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.30.22.RK.FH_B1 B1 -9.30.22.RK.LH CACAACCACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V152 GT 1331807 9.30.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.30.22.RK.LH_G12 G12 -9.30.22.RK.RH TAGGACGGGAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V165 GT 1331807 9.30.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.30.22.RK.RH_A1 A1 -9.4.22.RK.FH TTGCACCGTCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V167 GT 1331807 9.4.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.4.22.RK.FH_A3 A3 -9.4.22.RK.LH GGTCTTAGCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V250 GT 1331807 9.4.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.4.22.RK.LH_H2 H2 -9.4.22.RK.RH TCTCGCACTGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V238 GT 1331807 9.4.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.4.22.RK.RH_G2 G2 -9.5.22.RK.FH ACCCAAGCGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V214 GT 1331807 9.5.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.5.22.RK.FH_E2 E2 -9.5.22.RK.LH AGATGCAATGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V226 GT 1331807 9.5.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.5.22.RK.LH_F2 F2 -9.5.22.RK.RH CAGGCCACTCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V202 GT 1331807 9.5.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.5.22.RK.RH_D2 D2 -9.6.22.RK.FH TCTTGCGGAGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V91 GT 1331807 9.6.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.6.22.RK.FH_B11 B11 -9.6.22.RK.LH CGGAGAGACATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V162 GT 1331807 9.6.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.6.22.RK.LH_H10 H10 -9.6.22.RK.RH GTCGCTTGCACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V79 GT 1331807 9.6.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.6.22.RK.RH_A11 A11 -9.7.22.RK.FH TATGTTGACGGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V125 GT 1331807 9.7.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.7.22.RK.FH_E9 E9 -9.7.22.RK.LH TCGAGCCGATCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V137 GT 1331807 9.7.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.7.22.RK.LH_F9 F9 -9.7.22.RK.RH CACCATCTCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V113 GT 1331807 9.7.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_9.7.22.RK.RH_D9 D9 -9.8.22.RK.FH ACTGGCAAACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V215 GT 1331807 9.8.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.8.22.RK.FH_E3 E3 -9.8.22.RK.LH ACCAGTGACTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V239 GT 1331807 9.8.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.8.22.RK.LH_G3 G3 -9.8.22.RK.RH GCATTCGGCGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V227 GT 1331807 9.8.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.8.22.RK.RH_F3 F3 -9.9.22.RK.FH GTCCTACACAGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V178 GT 1331807 9.9.22.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.9.22.RK.FH_B2 B2 -9.9.22.RK.LH AAGTCTTATCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V166 GT 1331807 9.9.22.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.9.22.RK.LH_A2 A2 -9.9.22.RK.RH ACTGTTTACTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V190 GT 1331807 9.9.22.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_9.9.22.RK.RH_C2 C2 -BLANK.242.4C GAATATACCTGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V192 GT 1331807 BLANK.242.4C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK.242.4C_C4 C4 -BLANK238.3A AGCCCTGCTACA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3A_A3 A3 -BLANK238.3B ACTCGCTCGCTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3B_B3 B3 -BLANK238.3C CTGTCTATACTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3C_C3 C3 -BLANK238.3D TAATCTCGCCGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3D_D3 D3 -BLANK238.3E AGTAAAGATCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3E_E3 E3 -BLANK238.3F TTGCTGGACGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3F_F3 F3 -BLANK238.3G TTGCGGACCCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3G_G3 G3 -BLANK238.3H CGGTATAGCAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK238.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_BLANK238.3H_H3 H3 -BLANK239.10A CTCTGAGGTAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK239.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10A_A10 A10 -BLANK239.10B TCCGGCGGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 BLANK239.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10B_B10 B10 -BLANK239.10C ACATGATATTCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V6 GT 1331807 BLANK239.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10C_C10 C10 -BLANK239.10D TAAGGCATCGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V18 GT 1331807 BLANK239.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10D_D10 D10 -BLANK239.10E CACACAAAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V30 GT 1331807 BLANK239.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10E_E10 E10 -BLANK239.10F CGAGGCGAGTCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V42 GT 1331807 BLANK239.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10F_F10 F10 -BLANK239.10G TAGTCTAAGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V54 GT 1331807 BLANK239.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10G_G10 G10 -BLANK239.10H ATGACTAAGATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V66 GT 1331807 BLANK239.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 2 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_239 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_239_BLANK239.10H_H10 H10 -BLANK240.3A GCGAGGAAGTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V71 GT 1331807 BLANK240.3A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3A_A3 A3 -BLANK240.3B GGACAAGTGCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V83 GT 1331807 BLANK240.3B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3B_B3 B3 -BLANK240.3C CTGATGTACACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V95 GT 1331807 BLANK240.3C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3C_C3 C3 -BLANK240.3D TGGAGCCTTGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V107 GT 1331807 BLANK240.3D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3D_D3 D3 -BLANK240.3E ACGTGCCTTAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V119 GT 1331807 BLANK240.3E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3E_E3 E3 -BLANK240.3F CACCCTTGCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V131 GT 1331807 BLANK240.3F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3F_F3 F3 -BLANK240.3G ATGCCTCGTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V143 GT 1331807 BLANK240.3G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3G_G3 G3 -BLANK240.3H GTTGTTCTGGGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V155 GT 1331807 BLANK240.3H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 3 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_240 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_240_BLANK240.3H_H3 H3 -BLANK242.10A TGCTACAGACGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V174 GT 1331807 BLANK242.10A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10A_A10 A10 -BLANK242.10B GATCCCACGTAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V186 GT 1331807 BLANK242.10B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10B_B10 B10 -BLANK242.10C CGCTAGGATGTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V198 GT 1331807 BLANK242.10C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10C_C10 C10 -BLANK242.10D CTACTTACATCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V210 GT 1331807 BLANK242.10D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10D_D10 D10 -BLANK242.10E ACCACCGTAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V222 GT 1331807 BLANK242.10E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10E_E10 E10 -BLANK242.10F CGGTTGGCGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V234 GT 1331807 BLANK242.10F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10F_F10 F10 -BLANK242.10G CCACCGGGCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V246 GT 1331807 BLANK242.10G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10G_G10 G10 -BLANK242.10H TATGTGCCGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V258 GT 1331807 BLANK242.10H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.10H_H10 H10 -BLANK242.11A AGGTGAGTTCTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V175 GT 1331807 BLANK242.11A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11A_A11 A11 -BLANK242.11B CCGCCAGCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V187 GT 1331807 BLANK242.11B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11B_B11 B11 -BLANK242.11C AGCGGTAGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V199 GT 1331807 BLANK242.11C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11C_C11 C11 -BLANK242.11D CGCACGTACCTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V211 GT 1331807 BLANK242.11D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11D_D11 D11 -BLANK242.11E AGGAAGTAACTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V223 GT 1331807 BLANK242.11E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11E_E11 E11 -BLANK242.11F CGATTCCTTAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V235 GT 1331807 BLANK242.11F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11F_F11 F11 -BLANK242.11G AATCCGGTCACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V247 GT 1331807 BLANK242.11G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11G_G11 G11 -BLANK242.11H ATACCGTCTTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V259 GT 1331807 BLANK242.11H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.11H_H11 H11 -BLANK242.12A AACGATCATAGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V176 GT 1331807 BLANK242.12A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12A_A12 A12 -BLANK242.12B TCATCTTGATTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V188 GT 1331807 BLANK242.12B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12B_B12 B12 -BLANK242.12C GTCAGTATGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V200 GT 1331807 BLANK242.12C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12C_C12 C12 -BLANK242.12D GTCCTCGCGACT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V212 GT 1331807 BLANK242.12D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12D_D12 D12 -BLANK242.12E CGTTCGCTAGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V224 GT 1331807 BLANK242.12E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12E_E12 E12 -BLANK242.12F TGCCTGCTCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V236 GT 1331807 BLANK242.12F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12F_F12 F12 -BLANK242.12G TCTTACCCATAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V248 GT 1331807 BLANK242.12G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12G_G12 G12 -BLANK242.12H TGTGCTTGTAGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V260 GT 1331807 BLANK242.12H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.12H_H12 H12 -BLANK242.4D ACCAGAAATGTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V204 GT 1331807 BLANK242.4D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.4D_D4 D4 -BLANK242.4E AACACCATCGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V216 GT 1331807 BLANK242.4E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.4E_E4 E4 -BLANK242.4F TCTACATACATA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V228 GT 1331807 BLANK242.4F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.4F_F4 F4 -BLANK242.4G TGGCGCACGGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V240 GT 1331807 BLANK242.4G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.4G_G4 G4 -BLANK242.4H ACTGCCCGATAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V252 GT 1331807 BLANK242.4H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.4H_H4 H4 -BLANK242.5A TCTGGCTACGAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V169 GT 1331807 BLANK242.5A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5A_A5 A5 -BLANK242.5B ATAGTTAGGGCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V181 GT 1331807 BLANK242.5B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5B_B5 B5 -BLANK242.5C GAATCTGACAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V193 GT 1331807 BLANK242.5C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5C_C5 C5 -BLANK242.5D CTCATCATGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V205 GT 1331807 BLANK242.5D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5D_D5 D5 -BLANK242.5E TTATCCAGTCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V217 GT 1331807 BLANK242.5E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5E_E5 E5 -BLANK242.5F GAGTCTTGGTAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V229 GT 1331807 BLANK242.5F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5F_F5 F5 -BLANK242.5G CATTTACATCAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V241 GT 1331807 BLANK242.5G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5G_G5 G5 -BLANK242.5H TTCTTAACGCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V253 GT 1331807 BLANK242.5H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.5H_H5 H5 -BLANK242.6A AGTAGTTTCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V170 GT 1331807 BLANK242.6A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6A_A6 A6 -BLANK242.6B GACCCGTTTCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V182 GT 1331807 BLANK242.6B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6B_B6 B6 -BLANK242.6C ATTGCCTTGATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V194 GT 1331807 BLANK242.6C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6C_C6 C6 -BLANK242.6D TTAGGATTCTAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V206 GT 1331807 BLANK242.6D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6D_D6 D6 -BLANK242.6E GTTTATCTTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V218 GT 1331807 BLANK242.6E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6E_E6 E6 -BLANK242.6F CAGTCTAGTACG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V230 GT 1331807 BLANK242.6F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6F_F6 F6 -BLANK242.6G GTGGGACTGCGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V242 GT 1331807 BLANK242.6G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6G_G6 G6 -BLANK242.6H CTCCCGAGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V254 GT 1331807 BLANK242.6H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.6H_H6 H6 -BLANK242.7A CAGATCCCAACC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V171 GT 1331807 BLANK242.7A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7A_A7 A7 -BLANK242.7B TGACTGCGTTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V183 GT 1331807 BLANK242.7B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7B_B7 B7 -BLANK242.7C GAGCCCAAAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V195 GT 1331807 BLANK242.7C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7C_C7 C7 -BLANK242.7D CAACGAACCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V207 GT 1331807 BLANK242.7D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7D_D7 D7 -BLANK242.7E GTTCGCCGCATC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V219 GT 1331807 BLANK242.7E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7E_E7 E7 -BLANK242.7F GTTCGAGTGAAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V231 GT 1331807 BLANK242.7F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7F_F7 F7 -BLANK242.7G CGGCCTAAGTTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V243 GT 1331807 BLANK242.7G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7G_G7 G7 -BLANK242.7H TAGACTTCAGAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V255 GT 1331807 BLANK242.7H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.7H_H7 H7 -BLANK242.8A GATAGCACTCGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V172 GT 1331807 BLANK242.8A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8A_A8 A8 -BLANK242.8B ACGTTAATATTC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V184 GT 1331807 BLANK242.8B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8B_B8 B8 -BLANK242.8C CCATGTGGCTCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V196 GT 1331807 BLANK242.8C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8C_C8 C8 -BLANK242.8D ACACGTTTGGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V208 GT 1331807 BLANK242.8D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8D_D8 D8 -BLANK242.8E AGACTATTTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V220 GT 1331807 BLANK242.8E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8E_E8 E8 -BLANK242.8F AGTCCGAGTTGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V232 GT 1331807 BLANK242.8F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8F_F8 F8 -BLANK242.8G GCTGAGCCTTTG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V244 GT 1331807 BLANK242.8G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8G_G8 G8 -BLANK242.8H ACTTAGACTCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V256 GT 1331807 BLANK242.8H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.8H_H8 H8 -BLANK242.9A GTAATTGTAATT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V173 GT 1331807 BLANK242.9A FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9A_A9 A9 -BLANK242.9B TCTAACGAGTGC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V185 GT 1331807 BLANK242.9B FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9B_B9 B9 -BLANK242.9C CGTTCCTTGTTA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V197 GT 1331807 BLANK242.9C FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9C_C9 C9 -BLANK242.9D CGTCGCAGCCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V209 GT 1331807 BLANK242.9D FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9D_D9 D9 -BLANK242.9E AGCGATTCCTCG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V221 GT 1331807 BLANK242.9E FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9E_E9 E9 -BLANK242.9F CGTGAGGACCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V233 GT 1331807 BLANK242.9F FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9F_F9 F9 -BLANK242.9G AGAGACGCGTAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V245 GT 1331807 BLANK242.9G FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9G_G9 G9 -BLANK242.9H GGACCTGGATGG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V257 GT 1331807 BLANK242.9H FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina MCM GTGTGYCAGCMGCCGCGGTAA 122822 4 Echo 550 Feist 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_242 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_242_BLANK242.9H_H9 H9 diff --git a/qp_klp/tests/good-prep-file.txt b/qp_klp/tests/good-prep-file.txt deleted file mode 100644 index e7321022..00000000 --- a/qp_klp/tests/good-prep-file.txt +++ /dev/null @@ -1,50 +0,0 @@ -sample_name experiment_design_description library_construction_protocol platform run_center run_date run_prefix sequencing_meth center_name center_project_name instrument_model runid lane sample project well_description i5_index_id sample_plate index2 index sample_well i7_index_id raw_reads quality_filtered_reads non_host_reads fraction_passing_quality_filtefraction_non_human -363192526 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192526_S9_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192526.A3 iTru5_09_A Sample_Project_99999_1-4 TCTGAGAG CATCTACG A3 iTru7_114_05 10749 NA NA NA NA -363192073 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192073_S195_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192073.F1 iTru5_103_A Sample_Project_99999_1-4 TGGTCCTT GCAATTCG F1 iTru7_305_11 16435 NA NA NA NA -363193755 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193755_S7_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193755.M1 iTru5_07_A Sample_Project_99999_1-4 GGTGTCTT GATTGCTC M1 iTru7_114_03 14303 NA NA NA NA -363192568 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192568_S59_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192568.E15 iTru5_11_E Sample_Project_99999_1-4 ATAAGGCG CAATCGAC E15 iTru7_204_07 10000 NA NA NA NA -363193764 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193764_S24_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193764.O5 iTru5_12_B Sample_Project_99999_1-4 GGTCAGAT TACACGCT O5 iTru7_201_08 14363 NA NA NA NA -363197837 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197837_S382_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197837.L24 iTru5_122_H Sample_Project_99999_1-4 AACCGTTC TGATCGGA L24 iTru7_113_06 9281 NA NA NA NA -363193058 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193058_S168_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193058.O18 iTru5_24_F Sample_Project_99999_1-4 TGGAGAGT AGCAGATG O18 iTru7_303_08 3113 NA NA NA NA -363192067 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192067_S228_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192067.H9 iTru5_112_C Sample_Project_99999_1-4 AGGTCACT TGGTACAG H9 iTru7_115_08 11174 NA NA NA NA -363192066 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192066_S236_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192066.H11 iTru5_108_D Sample_Project_99999_1-4 GATTGCTC GATCCATG H11 iTru7_101_04 7736 NA NA NA NA -363193001 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193001_S108_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193001.G4 iTru5_24_A Sample_Project_99999_1-4 TTCTCTCG GATAGCGA G4 iTru7_208_08 21285 NA NA NA NA -363197803 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197803_S356_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197803.H18 iTru5_120_F Sample_Project_99999_1-4 CATGAGGA TCAGACGA H18 iTru7_111_04 13898 NA NA NA NA -363192078 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192078_S233_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192078.B11 iTru5_105_D Sample_Project_99999_1-4 AAGACTCC ACGTTACC B11 iTru7_101_01 16184 NA NA NA NA -363192050 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192050_S204_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192050.H3 iTru5_112_A Sample_Project_99999_1-4 CCAAGACT CGTAGGTT H3 iTru7_401_08 14015 NA NA NA NA -363197086 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197086_S304_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197086.P4 iTru5_116_B Sample_Project_99999_1-4 GTTCAACC TGGATCAC P4 iTru7_106_12 9664 NA NA NA NA -363197089 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197089_S310_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197089.L6 iTru5_122_B Sample_Project_99999_1-4 CCTTGATC TGAACCTG L6 iTru7_107_06 8456 NA NA NA NA -363193005 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193005_S115_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193005.E6 iTru5_19_B Sample_Project_99999_1-4 CTAGGCAT CCTGATTG E6 iTru7_209_03 12614 NA NA NA NA -363193007 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193007_S117_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193007.I6 iTru5_21_B Sample_Project_99999_1-4 GTTGACCT TACCACAG I6 iTru7_209_05 12300 NA NA NA NA -363197110 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197110_S347_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197110.F16 iTru5_123_E Sample_Project_99999_1-4 CTAGCAAG ACAGCAAC F16 iTru7_110_07 10206 NA NA NA NA -363192124 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192124_S286_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192124.L23 iTru5_110_H Sample_Project_99999_1-4 TTGCTGGA AGTGTTGG L23 iTru7_105_06 10658 NA NA NA NA -363193040 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193040_S150_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193040.K14 iTru5_18_E Sample_Project_99999_1-4 CTGCACTT TAGCGTCT K14 iTru7_302_02 8141 NA NA NA NA -363192553 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192553_S44_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192553.G11 iTru5_08_D Sample_Project_99999_1-4 GCACAACT CGTTGAGT G11 iTru7_203_04 8072 NA NA NA NA -363197824 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197824_S380_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197824.H24 iTru5_120_H Sample_Project_99999_1-4 GGACAATC CATACCAC H24 iTru7_113_04 14847 NA NA NA NA -363192082 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192082_S244_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192082.H13 iTru5_104_E Sample_Project_99999_1-4 CAGAGTGT GTCCTTCT H13 iTru7_101_12 14390 NA NA NA NA -363192558 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192558_S49_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192558.A13 iTru5_01_E Sample_Project_99999_1-4 CACAAGTC GAACACAC A13 iTru7_203_09 12548 NA NA NA NA -363192598 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192598_S89_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192598.A23 iTru5_05_H Sample_Project_99999_1-4 ACTCCATC CACGTTGT A23 iTru7_207_01 16682 NA NA NA NA -363192112 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192112_S271_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192112.N19 iTru5_107_G Sample_Project_99999_1-4 TGGACTCT GCTGGATT N19 iTru7_104_03 56357 NA NA NA NA -363197075 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197075_S290_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197075.D2 iTru5_114_A Sample_Project_99999_1-4 CCTGTCAT TAACCGGT D2 iTru7_105_10 12058 NA NA NA NA -363192059 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192059_S224_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192059.P7 iTru5_108_C Sample_Project_99999_1-4 CGCAATCT CTGACACA P7 iTru7_115_04 13549 NA NA NA NA -363192578 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192578_S69_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192578.I17 iTru5_09_F Sample_Project_99999_1-4 CCAGTGTT AAGGCGTT I17 iTru7_205_05 8423 NA NA NA NA -363192096 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192096_S252_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192096.H15 iTru5_112_E Sample_Project_99999_1-4 GATGCACT AAGAGCCA H15 iTru7_102_08 13047 NA NA NA NA -363192105 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192105_S267_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192105.F19 iTru5_103_G Sample_Project_99999_1-4 CGACCATT AGGTTCGA F19 iTru7_103_11 6423 NA NA NA NA -363193000 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193000_S109_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193000.I4 iTru5_13_B Sample_Project_99999_1-4 CGTCAATG TTGGTGAG I4 iTru7_208_09 8924 NA NA NA NA -363193014 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193014_S124_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193014.G8 iTru5_16_C Sample_Project_99999_1-4 GCTGGATT GGTACTAC G8 iTru7_209_12 9234 NA NA NA NA -363193028 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193028_S138_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193028.C12 iTru5_18_D Sample_Project_99999_1-4 GGTTGATG CGCATGAT C12 iTru7_301_02 17037 NA NA NA NA -363192559 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192559_S50_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192559.C13 iTru5_02_E Sample_Project_99999_1-4 TGGAGTTG GCTTAGCT C13 iTru7_203_10 8718 NA NA NA NA -363193016 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193016_S126_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193016.K8 iTru5_18_C Sample_Project_99999_1-4 TCGAAGGT TCGTAGTC K8 iTru7_210_02 9857 NA NA NA NA -363193032 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193032_S142_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193032.K12 iTru5_22_D Sample_Project_99999_1-4 GGACCTAT AGTTCGTC K12 iTru7_301_06 9687 NA NA NA NA -363191841 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363191841_S198_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363191841.L1 iTru5_106_A Sample_Project_99999_1-4 TTGGACGT ATCGCCAT L1 iTru7_401_02 24528 NA NA NA NA -363192566 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192566_S57_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192566.A15 iTru5_09_E Sample_Project_99999_1-4 GTTAGACG ACCATGTG A15 iTru7_204_05 12739 NA NA NA NA -363193762 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193762_S15_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193762.M3 iTru5_03_B Sample_Project_99999_1-4 ACAGCTCA ACATAGGC M3 iTru7_114_11 10882 NA NA NA NA -363192796 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192796_S101_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192796.I2 iTru5_17_A Sample_Project_99999_1-4 GATACTGG ATGACGTC I2 iTru7_208_01 12210 NA NA NA NA -363192074 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192074_S237_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192074.J11 iTru5_109_D Sample_Project_99999_1-4 AGTGGATC GCCTATCA J11 iTru7_101_05 8447 NA NA NA NA -363193071 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193071_S180_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193071.G22 iTru5_24_G Sample_Project_99999_1-4 GGAAGGAT GGTCAGAT G22 iTru7_304_08 17233 NA NA NA NA -363192094 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192094_S249_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192094.B15 iTru5_109_E Sample_Project_99999_1-4 CTGAAGCT TCACGTTC B15 iTru7_102_05 9207 NA NA NA NA -363193024 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193024_S132_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193024.G10 iTru5_24_C Sample_Project_99999_1-4 AAGTCGAG CTTACAGC G10 iTru7_210_08 9604 NA NA NA NA -363197031 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363197031_S305_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363197031.B6 iTru5_117_B Sample_Project_99999_1-4 ATTGAGCC CTCTGGTT B6 iTru7_107_01 14175 NA NA NA NA -363193054 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363193054_S164_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363193054.G18 iTru5_20_F Sample_Project_99999_1-4 ACGGTCTT GAGCTTGT G18 iTru7_303_04 8444 NA NA NA NA -363192054 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192054_S209_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192054.B5 iTru5_105_B Sample_Project_99999_1-4 CTACATCC TGAAGACG B5 iTru7_402_01 16423 NA NA NA NA -363192547 sample project Knight Lab Kapa HyperPlus Illumina KLM 2022-04-18 363192547_S38_L001 sequencing by synthesis UCSD Sample_Project Illumina iSeq 20220101_FS10001776_07_ABC12345-4567 1 Sample_Project Sample_Project_99999_1-4.363192547.K9 iTru5_02_D Sample_Project_99999_1-4 TAGCGTCT GGACTGTT K9 iTru7_202_10 14418 NA NA NA NA diff --git a/qp_klp/tests/good-sample-sheet.csv b/qp_klp/tests/good-sample-sheet.csv deleted file mode 100644 index 3780078b..00000000 --- a/qp_klp/tests/good-sample-sheet.csv +++ /dev/null @@ -1,814 +0,0 @@ -[Header],,,,,,,,,, -IEMFileVersion,4,,,,,,,,, -Investigator Name,Knight,,,,,,,,, -Experiment Name,RKL0042,,,,,,,,, -Date,2020-02-26,,,,,,,,, -Workflow,GenerateFASTQ,,,,,,,,, -Application,FASTQ Only,,,,,,,,, -Assay,Metagenomics,,,,,,,,, -Description,,,,,,,,,, -Chemistry,Default,,,,,,,,, -,,,,,,,,,, -[Reads],,,,,,,,,, -150,,,,,,,,,, -150,,,,,,,,,, -,,,,,,,,,, -[Settings],,,,,,,,,, -ReverseComplement,0,,,,,,,,, -,,,,,,,,,, -[Data],,,,,,,,,, -Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description -1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 -1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 -1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 -1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL_Salmonella_Typhi_MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-146 -1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL_Salmonella_Typhi_MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-147 -1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL_Salmonella_Typhi_MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-148 -1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL_Salmonella_Typhi_MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-149 -1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL_Salmonella_Typhi_MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-150 -1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL_Salmonella_Typhi_MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-151 -1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL_Salmonella_Typhi_MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-152 -1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL_Salmonella_Typhi_MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-153 -1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL_Salmonella_Typhi_MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-154 -1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL_Salmonella_Typhi_MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-155 -1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL_Salmonella_Typhi_MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-156 -1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL_Salmonella_Typhi_MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-157 -1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL_Salmonella_Typhi_MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-158 -1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL_Salmonella_Typhi_MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-159 -1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL_Salmonella_Typhi_MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-160 -1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL_Salmonella_Typhi_MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-161 -1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL_Salmonella_Typhi_MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-162 -1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL_Salmonella_Typhi_MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-163 -1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL_Salmonella_Typhi_MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-164 -1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL_Salmonella_Typhi_MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-165 -1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL_Salmonella_Typhi_MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-166 -1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL_Salmonella_Typhi_MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-167 -1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL_Salmonella_Typhi_MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-168 -1,P21_E_coli_ELI344,P21_E_coli_ELI344,Feist_11661_P40,E7,iTru7_109_09,AGTCGCTT,iTru5_03_C,CACAGGAA,Feist_11661,P21_E. coli_ELI344 -1,P21_E_coli_ELI345,P21_E_coli_ELI345,Feist_11661_P40,G7,iTru7_109_10,TGGCACTA,iTru5_04_C,CCATGAAC,Feist_11661,P21_E. coli_ELI345 -1,P21_E_coli_ELI347,P21_E_coli_ELI347,Feist_11661_P40,I7,iTru7_109_11,GGTTGTCA,iTru5_05_C,GCCAATAC,Feist_11661,P21_E. coli_ELI347 -1,P21_E_coli_ELI348,P21_E_coli_ELI348,Feist_11661_P40,K7,iTru7_109_12,AACCTCCT,iTru5_06_C,AGCTACCA,Feist_11661,P21_E. coli_ELI348 -1,P21_E_coli_ELI349,P21_E_coli_ELI349,Feist_11661_P40,M7,iTru7_110_01,ATGACCAG,iTru5_07_C,AACCGAAC,Feist_11661,P21_E. coli_ELI349 -1,P21_E_coli_ELI350,P21_E_coli_ELI350,Feist_11661_P40_diluted,O7,iTru7_110_02,AACCGTTC,iTru5_08_C,ATCGCAAC,Feist_11661,P21_E. coli_ELI350 -1,P21_E_coli_ELI351,P21_E_coli_ELI351,Feist_11661_P40,A9,iTru7_110_03,TCCAATCG,iTru5_09_C,GTTGCTGT,Feist_11661,P21_E. coli_ELI351 -1,P21_E_coli_ELI352,P21_E_coli_ELI352,Feist_11661_P40,C9,iTru7_110_04,CTGCACTT,iTru5_10_C,TCTAGTCC,Feist_11661,P21_E. coli_ELI352 -1,P21_E_coli_ELI353,P21_E_coli_ELI353,Feist_11661_P40,E9,iTru7_110_05,CGCTTAAC,iTru5_11_C,GACGAACT,Feist_11661,P21_E. coli_ELI353 -1,P21_E_coli_ELI354,P21_E_coli_ELI354,Feist_11661_P40,G9,iTru7_110_06,CACCACTA,iTru5_12_C,TTCGTACG,Feist_11661,P21_E. coli_ELI354 -1,P21_E_coli_ELI355,P21_E_coli_ELI355,Feist_11661_P40,I9,iTru7_110_07,ACAGCAAC,iTru5_01_D,CGACACTT,Feist_11661,P21_E. coli_ELI355 -1,P21_E_coli_ELI357,P21_E_coli_ELI357,Feist_11661_P40,K9,iTru7_110_08,GGAAGGAT,iTru5_02_D,AGACGCTA,Feist_11661,P21_E. coli_ELI357 -1,P21_E_coli_ELI358,P21_E_coli_ELI358,Feist_11661_P40_diluted,M9,iTru7_110_09,GGCGTTAT,iTru5_03_D,TGACAACC,Feist_11661,P21_E. coli_ELI358 -1,P21_E_coli_ELI359,P21_E_coli_ELI359,Feist_11661_P40,O9,iTru7_110_10,CTGTTGAC,iTru5_04_D,GGTACTTC,Feist_11661,P21_E. coli_ELI359 -1,P21_E_coli_ELI361,P21_E_coli_ELI361,Feist_11661_P40_diluted,A11,iTru7_110_11,GTCATCGA,iTru5_05_D,CTGTATGC,Feist_11661,P21_E. coli_ELI361 -1,P21_E_coli_ELI362,P21_E_coli_ELI362,Feist_11661_P40,C11,iTru7_110_12,TGACTTCG,iTru5_06_D,TCGACAAG,Feist_11661,P21_E. coli_ELI362 -1,P21_E_coli_ELI363,P21_E_coli_ELI363,Feist_11661_P40_diluted,E11,iTru7_111_01,CGATAGAG,iTru5_07_D,GCTGAATC,Feist_11661,P21_E. coli_ELI363 -1,P21_E_coli_ELI364,P21_E_coli_ELI364,Feist_11661_P40,G11,iTru7_111_02,TTCGTTGG,iTru5_08_D,AGTTGTGC,Feist_11661,P21_E. coli_ELI364 -1,P21_E_coli_ELI365,P21_E_coli_ELI365,Feist_11661_P40,I11,iTru7_111_03,TGGAGAGT,iTru5_09_D,TGTCGACT,Feist_11661,P21_E. coli_ELI365 -1,P21_E_coli_ELI366,P21_E_coli_ELI366,Feist_11661_P40_diluted,K11,iTru7_111_04,TCAGACGA,iTru5_10_D,AAGGCTCT,Feist_11661,P21_E. coli_ELI366 -1,P21_E_coli_ELI367,P21_E_coli_ELI367,Feist_11661_P40_diluted,M11,iTru7_111_05,GACGAATG,iTru5_11_D,CCTAACAG,Feist_11661,P21_E. coli_ELI367 -1,P21_E_coli_ELI368,P21_E_coli_ELI368,Feist_11661_P40,O11,iTru7_111_06,CATGAGGA,iTru5_12_D,AAGACGAG,Feist_11661,P21_E. coli_ELI368 -1,P21_E_coli_ELI369,P21_E_coli_ELI369,Feist_11661_P40,A13,iTru7_111_07,CGGTTGTT,iTru5_01_E,GACTTGTG,Feist_11661,P21_E. coli_ELI369 -1,stALE_E_coli_A1_F21_I1_R1,stALE_E_coli_A1_F21_I1_R1,Feist_11661_P40,C13,iTru7_111_08,TCCGTATG,iTru5_02_E,CAACTCCA,Feist_11661,stALE_E. coli_A1.F21.I1.R1 -1,stALE_E_coli_A2_F21_I1_R1,stALE_E_coli_A2_F21_I1_R1,Feist_11661_P40,E13,iTru7_111_09,TGTGGTAC,iTru5_03_E,TGTTCCGT,Feist_11661,stALE_E. coli_A2.F21.I1.R1 -1,stALE_E_coli_A3_F18_I1_R1,stALE_E_coli_A3_F18_I1_R1,Feist_11661_P40,G13,iTru7_111_10,AGAACGAG,iTru5_04_E,ACCGCTAT,Feist_11661,stALE_E. coli_A3.F18.I1.R1 -1,stALE_E_coli_A3_F40_I1_R1,stALE_E_coli_A3_F40_I1_R1,Feist_11661_P40,I13,iTru7_111_11,CTTCGTTC,iTru5_05_E,CTTAGGAC,Feist_11661,stALE_E. coli_A3.F40.I1.R1 -1,stALE_E_coli_A4_F21_I1_R1,stALE_E_coli_A4_F21_I1_R1,Feist_11661_P40,K13,iTru7_111_12,CCAATAGG,iTru5_06_E,TATGACCG,Feist_11661,stALE_E. coli_A4.F21.I1.R1 -1,stALE_E_coli_A4_F21_I1_R2,stALE_E_coli_A4_F21_I1_R2,Feist_11661_P40,M13,iTru7_112_01,ACCATCCA,iTru5_07_E,AGCTAGTG,Feist_11661,stALE_E. coli_A4.F21.I1.R2 -1,stALE_E_coli_A4_F42_I1_R1,stALE_E_coli_A4_F42_I1_R1,Feist_11661_P40,O13,iTru7_112_02,CACACATG,iTru5_08_E,GAACGAAG,Feist_11661,stALE_E. coli_A4.F42.I1.R1 -1,stALE_E_coli_A5_F21_I1_R1,stALE_E_coli_A5_F21_I1_R1,Feist_11661_P40,A15,iTru7_112_03,CTTGTCGA,iTru5_09_E,CGTCTAAC,Feist_11661,stALE_E. coli_A5.F21.I1.R1 -1,stALE_E_coli_A5_F42_I1_R1,stALE_E_coli_A5_F42_I1_R1,Feist_11661_P40,C15,iTru7_112_04,AGTCTCAC,iTru5_10_E,AACCAGAG,Feist_11661,stALE_E. coli_A5.F42.I1.R1 -1,stALE_E_coli_A6_F21_I1_R1,stALE_E_coli_A6_F21_I1_R1,Feist_11661_P40,E15,iTru7_112_05,AGTTGGCT,iTru5_11_E,CGCCTTAT,Feist_11661,stALE_E. coli_A6.F21.I1.R1 -1,stALE_E_coli_A6_F43_I1_R1,stALE_E_coli_A6_F43_I1_R1,Feist_11661_P40,G15,iTru7_112_06,CCGGAATT,iTru5_12_E,CTCGTTCT,Feist_11661,stALE_E. coli_A6.F43.I1.R1 -1,stALE_E_coli_A7_F21_I1_R1,stALE_E_coli_A7_F21_I1_R1,Feist_11661_P40,I15,iTru7_112_07,CAGTGAAG,iTru5_01_F,GTGAGACT,Feist_11661,stALE_E. coli_A7.F21.I1.R1 -1,stALE_E_coli_A7_F42_I1_R1,stALE_E_coli_A7_F42_I1_R1,Feist_11661_P40,K15,iTru7_112_08,CCTACTGA,iTru5_02_F,AACACGCT,Feist_11661,stALE_E. coli_A7.F42.I1.R1 -1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 -1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 -1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 -1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 -1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 -1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 -1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 -1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 -1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 -1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 -1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 -1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 -1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 -1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 -1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 -1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 -1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 -1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 -1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 -1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 -1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 -1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 -1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 -1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 -1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 -1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 -1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 -1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 -1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 -1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 -1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick_6123,3A -1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick_6123,4A -1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G -1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H -1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 -1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 -1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 -1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 -1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 -1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 -1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 -1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 -1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 -1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 -1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 -1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 -1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 -1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 -1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 -1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 -1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 -1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 -1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 -1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 -1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 -1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 -1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 -1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 -1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 -1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 -1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 -1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 -1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 -1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 -1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 -1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 -1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 -1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 -1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 -1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 -1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 -1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 -1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 -1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 -1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 -1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 -1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 -1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 -1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 -1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 -1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 -1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 -1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 -1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 -1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 -1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 -1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 -1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 -1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 -1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 -1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 -1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 -1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 -1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 -1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 -1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 -1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 -1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 -1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 -1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 -1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 -1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 -1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 -1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 -1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 -1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 -1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 -1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 -1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 -1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 -1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 -1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 -1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 -1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 -1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 -1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 -1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 -1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 -1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 -1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 -1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 -1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 -1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 -1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 -1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 -1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 -1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,5B -1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,6A -1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,BLANK.41.12G -1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 -1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 -1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 -1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 -1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 -1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 -1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 -1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 -1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 -1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 -1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 -1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 -1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 -1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 -1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 -1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 -1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 -1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 -1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 -1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 -1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 -1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 -1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 -1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 -1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 -1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 -1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 -1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 -1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 -1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 -1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 -1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,7A -1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,8A -1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G -1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 -1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 -1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 -1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 -1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 -1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 -1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,ISB -1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,GFR -1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G -1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H -1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D -1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L -1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N -1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E -1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 -1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 -1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 -1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 -1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 -1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 -1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 -1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR -1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR -1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR -1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS -1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A -1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B -1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C -1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D -1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E -1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F -1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G -1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H -1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 -1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 -1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 -1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 -1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 -1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 -1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 -1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 -1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 -1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 -1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 -1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 -1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 -1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 -1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 -1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 -1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 -1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 -1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 -1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 -1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 -1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 -1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 -1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 -1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 -1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 -1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 -1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 -1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 -1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 -1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 -1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 -1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 -1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 -1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 -1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 -1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 -1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 -1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 -1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 -1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 -1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 -1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 -1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 -1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 -1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 -1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 -1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 -1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 -1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 -1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 -1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 -1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 -1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 -1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 -1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 -1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 -1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 -1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 -1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 -1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 -1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 -1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 -1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 -1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 -1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 -1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 -1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 -1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 -1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 -1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 -1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 -1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 -1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 -1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 -1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 -1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 -1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 -1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 -1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 -1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 -1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 -1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 -1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 -1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 -1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 -1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 -1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 -1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 -1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 -1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 -1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 -1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 -1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 -1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 -1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 -1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A -1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B -1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C -1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D -1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E -1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F -1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G -1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H -1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 -1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 -1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 -1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 -1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 -1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 -1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 -1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 -1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 -1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 -1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 -1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 -1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 -1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 -1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 -1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 -1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 -1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 -1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 -1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 -1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 -1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 -1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 -1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 -1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 -1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 -1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 -1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 -1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 -1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 -1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 -1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 -1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 -1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 -1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 -1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 -1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 -1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 -1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 -1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 -1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 -1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 -1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 -1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 -1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 -1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 -1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 -1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 -1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 -1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 -1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 -1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 -1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 -1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 -1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 -1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 -1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 -1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 -1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 -1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 -1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 -1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 -1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 -1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 -1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 -1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 -1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 -1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 -1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 -1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 -1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 -1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 -1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 -1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 -1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 -1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 -1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 -1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 -1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 -1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 -1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 -1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 -1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 -1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 -1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 -1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 -1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 -1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 -1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 -1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 -1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 -1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 -1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 -1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 -1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 -1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 -1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A -1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B -1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C -1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D -1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E -1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F -1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G -1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H -1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 -1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 -1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 -1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 -1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 -1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 -1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 -1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 -1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 -1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 -1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 -1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 -1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 -1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 -1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 -1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 -1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 -1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 -1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 -1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 -1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 -1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 -1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 -1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 -1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 -1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 -1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 -1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 -1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 -1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 -1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 -1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 -1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 -1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 -1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 -1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 -1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 -1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 -1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 -1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 -1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 -1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 -1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 -1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 -1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 -1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 -1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 -1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 -1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 -1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 -1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 -1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 -1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 -1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 -1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 -1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 -1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 -1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 -1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 -1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 -1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 -1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 -1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 -1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 -1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 -1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 -1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 -1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 -1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 -1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 -1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 -1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 -1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 -1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 -1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 -1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 -1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 -1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 -1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 -1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 -1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 -1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 -1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 -1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 -1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 -1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 -1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 -1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 -1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 -1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 -1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 -1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 -1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 -1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 -1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 -1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 -1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A -1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B -1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C -1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D -1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E -1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F -1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G -1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H -1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 -1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 -1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 -1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 -1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 -1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 -1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 -1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 -1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 -1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 -1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 -1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 -1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 -1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 -1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 -1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 -1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 -1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 -1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 -1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 -1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 -1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 -1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 -1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 -1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 -1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 -1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 -1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 -1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 -1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 -1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 -1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 -1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 -1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 -1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 -1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 -1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 -1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 -1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 -1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 -1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 -1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 -1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 -1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 -1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 -1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 -1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 -1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 -1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 -1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 -1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 -1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 -1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 -1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 -1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 -1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 -1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 -1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 -1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 -1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 -1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 -1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 -1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 -1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 -,,,,,,,,,, -[Bioinformatics],,,,,,,,,, -Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, -NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,, -Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,, -Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,, -,,,,,,,,,, -[Contact],,,,,,,,,, -Email,Sample_Project,,,,,,,,, -test@lol.com,Feist_11661,,,,,,,,, -,,,,,,,,,, diff --git a/qp_klp/tests/good_mapping_file.txt b/qp_klp/tests/good_mapping_file.txt deleted file mode 100644 index e7de1600..00000000 --- a/qp_klp/tests/good_mapping_file.txt +++ /dev/null @@ -1,25 +0,0 @@ -sample_name barcode center_name center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id -SKM7.640188 TATGCCAGAGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.FH_C4 C4 -SKD9.640182 ATCTAGTGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.LH_D4 D4 -SKM8.640201 TTCCTTAGTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.RH_B4 B4 -SKB8.640193 GTGGAGTCTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.FH_D1 D1 -SKD2.640178 TGATGTGCTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.LH_E1 E1 -SKM3.640197 TGACTAATGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.RH_C1 C1 -SKM4.640180 GTAGTAGACCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.FH_E2 E2 -SKB9.640200 CCGGACAAGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.LH_F2 F2 -SKB4.640189 ACCTTACACCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.RH_D2 D2 -SKB5.640181 CGCGCCTTAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.FH_A5 A5 -SKB6.640176 CGTCCGTATGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.LH_B5 B5 -SKM2.640199 GACTCTGCTCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.RH_H4 H4 -SKM5.640177 TCCATACCGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.FH_A2 A2 -SKD8.640184 CGGGACACCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.RH_C2 C2 -SKD4.640185 TGTGCACGCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.FH_F1 F1 -SKB3.640195 CTATGTATTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.LH_H1 H1 -SKB7.640196 TAAATATACCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.FH_G2 G2 -SKD3.640198 ACTCCCGTGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.LH_H2 H2 -SKD7.640191 CCTAACGGTCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.RH_A4 A4 -SKD6.640190 CTCGCCCTCGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.FH_E4 E4 -SKB2.640194 TACTAACGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.LH_F4 F4 -SKM9.640192 GTCGTCCAAATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.RH_G4 G4 -SKM6.640187 GTCATGCTCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.FH_H5 H5 -SKD5.640186 GCGATCACACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.LH_F5 F5 diff --git a/qp_klp/tests/sample_info_file_1_bad_blanks.tsv b/qp_klp/tests/sample_info_file_1_bad_blanks.tsv deleted file mode 100644 index cd12fdb7..00000000 --- a/qp_klp/tests/sample_info_file_1_bad_blanks.tsv +++ /dev/null @@ -1,5 +0,0 @@ -sample_name collection_timestamp elevation empo_1 empo_2 empo_3 env_biome env_feature env_material env_package geo_loc_name host_subject_id latitude longitude sample_type scientific_name taxon_id description title dna_extracted physical_specimen_location physical_specimen_remaining -1.0 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.None.20C.BLANK.1 32.5 -117.25 control blank metagenome 256318 BLANK.None.20C.BLANK.1 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -2.00 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.None.20C.BLANK.2 32.5 -117.25 control blank metagenome 256318 BLANK.None.20C.BLANK.2 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -3.000 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.AssayAssure.20C.BLANK.1 32.5 -117.25 control blank metagenome 256318 BLANK.AssayAssure.20C.BLANK.1 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE - diff --git a/qp_klp/tests/sample_info_file_1_blanks.tsv b/qp_klp/tests/sample_info_file_1_blanks.tsv deleted file mode 100644 index b6a9e890..00000000 --- a/qp_klp/tests/sample_info_file_1_blanks.tsv +++ /dev/null @@ -1,13 +0,0 @@ -sample_name collection_timestamp elevation empo_1 empo_2 empo_3 env_biome env_feature env_material env_package geo_loc_name host_subject_id latitude longitude sample_type scientific_name taxon_id description title dna_extracted physical_specimen_location physical_specimen_remaining -BLANK.None.20C.BLANK.1 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.None.20C.BLANK.1 32.5 -117.25 control blank metagenome 256318 BLANK.None.20C.BLANK.1 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK.None.20C.BLANK.2 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.None.20C.BLANK.2 32.5 -117.25 control blank metagenome 256318 BLANK.None.20C.BLANK.2 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK.AssayAssure.20C.BLANK.1 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.AssayAssure.20C.BLANK.1 32.5 -117.25 control blank metagenome 256318 BLANK.AssayAssure.20C.BLANK.1 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK.AssayAssure.20C.BLANK.2 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.AssayAssure.20C.BLANK.2 32.5 -117.25 control blank metagenome 256318 BLANK.AssayAssure.20C.BLANK.2 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK.EtOH.20C.BLANK.1 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.EtOH.20C.BLANK.1 32.5 -117.25 control blank metagenome 256318 BLANK.EtOH.20C.BLANK.1 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK.EtOH.20C.BLANK.2 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK.EtOH.20C.BLANK.2 32.5 -117.25 control blank metagenome 256318 BLANK.EtOH.20C.BLANK.2 PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12C 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12C 32.5 -117.25 control blank metagenome 256318 BLANK5.12C PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12D 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12D 32.5 -117.25 control blank metagenome 256318 BLANK5.12D PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12E 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12E 32.5 -117.25 control blank metagenome 256318 BLANK5.12E PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12F 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12F 32.5 -117.25 control blank metagenome 256318 BLANK5.12F PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12G 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12G 32.5 -117.25 control blank metagenome 256318 BLANK5.12G PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE -BLANK5.12H 2022-1-19 193 Control Negative Sterile water blank urban biome research facility sterile water misc environment USA:CA:San Diego BLANK5.12H 32.5 -117.25 control blank metagenome 256318 BLANK5.12H PLUS_Urobiome_Validation_Vaginal TRUE UCSD FALSE diff --git a/qp_klp/tests/test_klp.py b/qp_klp/tests/test_klp.py deleted file mode 100644 index 15ecdb7d..00000000 --- a/qp_klp/tests/test_klp.py +++ /dev/null @@ -1,1126 +0,0 @@ -# ----------------------------------------------------------------------------- -# Copyright (c) 2014--, The Qiita Development Team. -# -# Distributed under the terms of the BSD 3-clause License. -# -# The full license is in the file LICENSE, distributed with this software. -# ----------------------------------------------------------------------------- -import math -from unittest import main -from os import remove, makedirs, environ -from shutil import rmtree -from json import dumps -from tempfile import mkdtemp -from os.path import exists, isdir, join, realpath, dirname, split - -import pandas as pd -from qiita_client.testing import PluginTestCase -from qiita_client import ArtifactInfo -from qp_klp import __version__, plugin -from qp_klp.klp_util import (FailedSamplesRecord, map_sample_names_to_tube_ids, - update_blanks_in_qiita) -from qp_klp.klp import sequence_processing_pipeline -from time import sleep -import logging -import re -from metapool import KLSampleSheet -from shutil import copy - - -logging.basicConfig(level=logging.DEBUG, - format='%(asctime)s - %(message)s', - datefmt='%d-%b-%y %H:%M:%S') - - -class KLPTests(PluginTestCase): - def _make_temp_dir(self): - new_dir = mkdtemp() - self._clean_up_files.append(new_dir) - return new_dir - - def setUp(self): - # this will allow us to see the full errors - self.maxDiff = None - self.logger = logging.getLogger(__name__) - - plugin('https://localhost:8383', 'register', 'ignored') - sleep(2) - - self._clean_up_files = [] - - self.basedir = dirname(realpath(__file__)) - - self.multiqc_config_filepath = join(self._make_temp_dir(), - 'multiqc-config.yaml') - self.multiqc_config_data = [ - "title: 'Sequence processing summaries'\n", - "output_fn_name: 'index.html'\n", - "show_analysis_paths: False\n", - "show_analysis_time: False\n", - "run_modules:\n", - " - bclconvert\n", - " - fastqc\n", - " - fastp\n", - "sample_names_ignore:\n", - " - 'blank*'\n", - " - 'BLANK*'\n", - "no_version_check: False\n", - "plots_force_interactive: True\n", - "num_datasets_plot_limit: 1\n", - "max_table_rows: 10000\n", - "table_columns_visible:\n", - " 'Sequence Quality (bclconvert raw)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - " 'Trimming':\n", - " input_format: False\n", - " avg_sequence_length: False\n", - " total_record_count: False\n", - " mean_sequence_length: False\n", - " fraction_bp_trimmed: False\n", - " fraction_records_with_adapters: False\n", - " 'Sequence Quality (trimmed)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - " 'Human Filtering':\n", - " overall_alignment_rate: True\n", - " 'Sequence Quality (filtered)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - "module_order:\n", - " - bclconvert:\n", - " name: 'Base Calling'\n", - " info: 'Conversion from BCL files to FASTQ files.'\n", - " - fastqc:\n", - " name: 'Sequence Quality (raw)'\n", - " info: 'Sequence quality and summary statistics for raw s", - "equences.'\n", - " path_filters:\n", - " - '*fastqc.zip'\n", - " - '*.csv'\n", - " - fastp:\n", - " name: 'Sequence Quality (adapter trimmed)'\n", - " info: 'Summary statistics from adapter trimming and qual", - "ity control with fastp.'\n", - " fn: '*.json'\n", - " - fastqc:\n", - " name: 'Sequence Quality (trimmed)'\n", - " info: 'Sequence quality and summary statistics after qua", - "lity-control and adapter trimming.'\n", - " path_filters:\n", - " - '*trimmed_fastqc.zip'\n", - " - '*fastp_fastqc.zip'\n" - ] - - self.sample_csv_data = [ - "[Header],,,,,,,,,,\n", - "IEMFileVersion,4,,,,,,,,,\n", - "Investigator Name,Knight,,,,,,,,,\n", - "Experiment Name,RKL0042,,,,,,,,,\n", - "Date,2/26/20,,,,,,,,,\n", - "Workflow,GenerateFASTQ,,,,,,,,,\n", - "Application,FASTQ Only,,,,,,,,,\n", - "Assay,Metagenomic,,,,,,,,,\n", - "Description,,,,,,,,,,\n", - "Chemistry,Default,,,,,,,,,\n", - ",,,,,,,,,,\n", - "[Reads],,,,,,,,,,\n", - "150,,,,,,,,,,\n", - "150,,,,,,,,,,\n", - ",,,,,,,,,,\n", - "[Settings],,,,,,,,,,\n", - "ReverseComplement,0,,,,,,,,,\n", - ",,,,,,,,,,\n", - "[Data],,,,,,,,,,\n", - "Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID," - "index,I5_Index_ID,index2,Sample_Project,Well_description\n", - "1,CDPH-SAL_Salmonella_Typhi_MDL-143,SKD7.640191" - ",Feist_1_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGAC" - "AA,Feist_1,CDPH-SAL_Salmonella Typhi_MDL-143\n", - "1,CDPH-SAL_Salmonella_Typhi_MDL-144,SKB8.640193XX" - ",Feist_1_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGC" - "AA,Feist_1,CDPH-SAL_Salmonella Typhi_MDL-144\n", - ",,,,,,,,,,\n", - "[Bioinformatics],,,,,,,,,,\n", - "Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapt" - "er,HumanFiltering,library_construction_protocol,experiment_desig" - "n_description,,,\n", - "Feist_1,1,FALSE,AACC,GGTT,FALSE,Knight Lab Kapa HP,Equip" - "eriment,,,\n", - ",,,,,,,,,,\n", - "[Contact],,,,,,,,,,\n", - "Email,Sample_Project,,,,,,,,,\n", - "test@lol.com,Feist_1,,,,,,,,,\n", - ",,,,,,,,,,\n", - ] - - self.out_dir = self._make_temp_dir() - self.search_dir = self._make_temp_dir() - - spp_config = { - "configuration": { - "pipeline": { - "younger_than": 90, - "older_than": 24, - "archive_path": '/not/out_dir', - "search_paths": [self.search_dir], - "amplicon_search_paths": [self.search_dir] - }, - "bcl2fastq": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bcl2fastq_2.20.0.422"], - "executable_path": "bcl2fastq", - "per_process_memory_limit": "10gb" - }, - "bcl-convert": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bclconvert_3.7.5"], - "executable_path": "bcl-convert", - "per_process_memory_limit": "10gb" - }, - "qc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 1, - "minimap_databases": [("/databases/minimap2/human-phix-db." - "mmi")], - "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", - "modules_to_load": ["fastp_0.20.1", "samtools_1.12", - "minimap2_2.18"], - "fastp_executable_path": "fastp", - "minimap2_executable_path": "minimap2", - "samtools_executable_path": "samtools", - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - }, - "seqpro": { - "seqpro_path": "seqpro", - "modules_to_load": [] - }, - "fastqc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "nthreads": 16, - "wallclock_time_in_hours": 1, - "modules_to_load": ["fastqc_0.11.5"], - "fastqc_executable_path": "fastqc", - "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": self.multiqc_config_filepath, - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - } - } - } - - # create the file and write the configuration out to disk - # for use by sequence_processing_pipeline(). - config_filepath = environ['QP_KLP_CONFIG_FP'] - - with open(config_filepath, 'w') as f: - f.write(dumps(spp_config, indent=2)) - - def tearDown(self): - for fp in self._clean_up_files: - if exists(fp): - if isdir(fp): - rmtree(fp) - else: - remove(fp) - - def _get_uploads_path(self): - # determine expected uploads directory using a valid artifact - results = self.qclient.get("/qiita_db/artifacts/types/") - - return join(results['uploads'], '1') - - def test_sequence_processing_pipeline(self): - # not a valid run_identifier folder and sample_sheet - params = {"run_identifier": "NOT_A_RUN_IDENTIFIER", - "sample_sheet": "NA", - "lane_number": 1} - - data = { - "user": "demo@microbio.me", - "command": dumps(["qp-klp", __version__, - "Sequence Processing Pipeline"]), - "status": "running", - "parameters": dumps(params), - } - - job_id = self.qclient.post("/apitest/processing_job/", - data=data)["job"] - - success, _, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir - ) - self.assertFalse(success) - self.assertEqual(msg, "This doesn't appear to be a valid sample sheet" - " or mapping file; please review.") - - test_dir = join(self.search_dir, "200318_A00953_0082_AH5TWYDSXY") - makedirs(test_dir) - - # create the sentinel files ConvertJob will check for. - with open(join(test_dir, 'RTAComplete.txt'), 'w') as f: - f.write("Hello World\n") - - with open(join(test_dir, 'RunInfo.xml'), 'w') as f: - f.write("Hello World\n") - - # create the project directory sequence_processing_pipeline() will - # expect to find fastq files in. - fastq_dir = join(self.out_dir, 'ConvertJob', 'Feist_1') - makedirs(fastq_dir) - - files = ["CDPH-SAL_Salmonella_Typhi_MDL-143_R1_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-143_R2_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-144_R1_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-144_R2_.fastq.gz"] - - for fastq_file in files: - fp = join(fastq_dir, fastq_file) - self.logger.debug("FASTQ FILE PATH: %s" % fp) - with open(fp, 'w') as f: - f.write("Hello World\n") - - # write multi-qc config file to a known location - with open(self.multiqc_config_filepath, 'w') as f: - for line in self.multiqc_config_data: - f.write(f"{line}\n") - - # create the Reports directory in the location GenPrepFileJob - # expects. - reports_dir = join(self.out_dir, 'ConvertJob', 'Reports') - makedirs(reports_dir, exist_ok=True) - - # create QCJobs output directory for use by GenPrepFileJob - qcj_output_fp = join(self.out_dir, 'QCJob', 'Feist_1') - qcj_filtered_sequences = join(qcj_output_fp, 'filtered_sequences') - makedirs(qcj_filtered_sequences) - - # create GenPrepFileJob output directory for use by packaging code and - # downstream-testing. - gp_root_fp = join(self.out_dir, 'GenPrepFileJob') - prep_files_root_fp = join(gp_root_fp, 'PrepFiles') - makedirs(prep_files_root_fp, exist_ok=True) - - prep_file_name = ('230224_M05314_0347_000000000-KVMH3.' - 'ABTX_20230227_11052.1.tsv') - - # copy sample prep-info file into position. - copy(join(self.basedir, prep_file_name), - join(prep_files_root_fp, prep_file_name)) - - # valid run_identifier folder but not sample_sheet - # NOTE: we are not creating a new job for this test, which is fine - params = {"run_identifier": "200318_A00953_0082_AH5TWYDSXY", - "sample_sheet": "NA", - "lane_number": 1} - - success, _, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir - ) - self.assertFalse(success) - - self.assertEqual(msg, "This doesn't appear to be a valid sample sheet" - " or mapping file; please review.") - - # test error due to missing sample_names - - params = { - "run_identifier": "200318_A00953_0082_AH5TWYDSXY", - "sample_sheet": { - "body": ''.join(self.sample_csv_data), - "content_type": "text/plain", - # verify sequence_processing_pipeline() will convert spaces - # to underscores ('_'). - "filename": "A sample sheet.csv", - }, - "lane_number": 2 - } - - success, _, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir) - - self.assertFalse(success) - self.assertTrue( - msg.startswith("Feist_1 has 1 missing samples (i.e. " - "SKB8.640193XX). Some samples from Qiita:")) - self.assertTrue( - msg.endswith(". No tube_id column in Qiita.")) - - # test success - # both valid run_identifier and sample_sheet - # NOTE: we are not creating a new job for this test, which is fine - - # fix self.sample_csv_data - self.sample_csv_data[21] = self.sample_csv_data[21].replace( - 'SKB8.640193XX', 'SKB8.640193') - params = { - "run_identifier": "200318_A00953_0082_AH5TWYDSXY", - "sample_sheet": { - "body": ''.join(self.sample_csv_data), - "content_type": "text/plain", - # verify sequence_processing_pipeline() will convert spaces - # to underscores ('_'). - "filename": "A sample sheet.csv", - }, - "lane_number": 2 - } - - # add files to QCJob/filtered... - new_files = ['file1_R1_file1.trimmed.fastq.gz', - 'file1_R2_file1.trimmed.fastq.gz', - 'file1_I1_file1.trimmed.fastq.gz', - 'file1_I2_file1.trimmed.fastq.gz', - 'file2_R1_file2.trimmed.fastq.gz', - 'file2_R2_file2.trimmed.fastq.gz', - 'file2_I1_file2.trimmed.fastq.gz', - 'file2_I2_file2.trimmed.fastq.gz'] - - for new_file in new_files: - nfp = join(qcj_filtered_sequences, new_file) - with open(nfp, 'w') as nf: - nf.write("Hello World!\n") - - success, ainfo, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir - ) - self.assertEquals(msg, 'Main Pipeline Finished, processing results') - self.assertTrue(success) - - exp = [ArtifactInfo("output", - "job-output-folder", - [(f"{self.out_dir}/final_results/", "directory")] - ) - ] - - self.assertEqual(ainfo, exp) - - # confirm that 'cmds.log' exists. - cmd_log_fp = join(self.out_dir, 'cmds.log') - self.assertTrue(exists(cmd_log_fp)) - - # confirm that fastq files were copied to uploads directory. - - uploads_fp = self._get_uploads_path() - - for some_file in new_files: - some_path = join(uploads_fp, some_file) - self.assertTrue(exists(some_path), msg=(f"'{some_path}' does not" - " exist.")) - - # confirm that an output directory named 'final_results' was created - # by the pipeline and that 'prep_files.tgz' is one of the products - # inside. - self.assertTrue(exists(join(self.out_dir, 'final_results', - 'prep-files.tgz'))) - - # confirm touched_studies.html was generated. - ts_fp = join(self.out_dir, 'final_results', 'touched_studies.html') - self.assertTrue(exists(ts_fp)) - - # verify sequence_processing_pipeline() will convert spaces - # to underscores ('_'). - self.assertTrue(exists(join(f"{self.out_dir}", 'A_sample_sheet.csv'))) - - # verify cmd.log - exp = ['cd OUT_DIR; tar zcvf logs-ConvertJob.tgz ConvertJob/logs', - ('cd OUT_DIR; tar zcvf reports-ConvertJob.tgz ConvertJob/Repor' - 'ts ConvertJob/Logs'), - 'cd OUT_DIR; tar zcvf logs-QCJob.tgz QCJob/logs', - 'cd OUT_DIR; tar zcvf logs-FastQCJob.tgz FastQCJob/logs', - 'cd OUT_DIR; tar zcvf reports-FastQCJob.tgz FastQCJob/fastqc', - ('cd OUT_DIR; tar zcvf logs-GenPrepFileJob.tgz GenPrepFileJob/' - 'logs'), - 'cd OUT_DIR; tar zcvf prep-files.tgz GenPrepFileJob/PrepFiles', - ('cd OUT_DIR; tar zcvf reports-QCJob.tgz QCJob/Feist_1/fas' - 'tp_reports_dir'), - ('cd OUT_DIR; mv QCJob/Feist_1/filtered_sequences/* ' - f'{uploads_fp}'), - 'cd OUT_DIR; mv *.tgz final_results', - 'cd OUT_DIR; mv FastQCJob/multiqc final_results', - 'cd OUT_DIR; mv touched_studies.html final_results'] - - cmdslog_fp = join(self.out_dir, 'cmds.log') - with open(cmdslog_fp, 'r') as f: - # read all lines into a list - cmds = f.readlines() - # remove newlines - cmds = [x.strip() for x in cmds] - # replace randomly-generated tmp directory with fixed text. - cmds = [re.sub(r'^cd .*?;', r'cd OUT_DIR;', x) for x in cmds] - self.assertEqual(exp, cmds) - - # confirm touched_studies.html was generated. - fp = join(self.out_dir, 'final_results', 'touched_studies.html') - self.assertTrue(exists(fp)) - - with open(fp) as f: - obs = f.readlines() - obs = [x.strip() for x in obs] - - # confirm touched_studies.html looks as expected, including prep-info - # links. - exp = ['', '', - '', '', - '', '', - '', '', '', '', - '', '', '', '', - '', - (''), - (''), - '', '', '
ProjectQiita Study IDQiita Prep IDQiita URLPrep URL
Feist_113https://localhost:21174/study/description/1' - 'https://localhost:21174/study/' - 'description/1?prep_id=3
'] - - self.assertEqual(obs, exp) - - # confirm prep info was inserted into Qiita and looks as intended. - obs = self.qclient.get("/qiita_db/prep_template/%s/data/" % 3) - - exp = {'data': {'1.SKB8.640193': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq', - 'qiita_prep_id': '3'}, - '1.SKD8.640184': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq', - 'qiita_prep_id': '3'}}} - - self.assertEqual(obs, exp) - - def test_failed_samples_recorder(self): - # since unittests can't run third-party code like bcl2fastq and - # skip_exec will bypass a Job's run() and audit() commands, we will - # instead test the FailedSamplesRecord class to confirm that it works - # as expected. - - # self.basedir = .../qp-knight-lab-processing/qp-knight-lab-processing - # /qp_klp/tests/ - sheet = KLSampleSheet(f'{self.basedir}/good-sample-sheet.csv') - fsr = FailedSamplesRecord(self.basedir, sheet.samples) - - # we want to include samples from all projects in the sample-sheet. - # order of projects listed is Feist_1, NYU_BMS_Melanoma_13059, and - # Gerwick_6123. - fail_set1 = ['Pputida_TALE__HGL_Pputida_121', 'EP073160B01', '5B'] - fail_set2 = ['Deoxyribose_PALE_ALE__MG1655_Lib4_20_16', 'EP202095B04', - '4A'] - fail_set3 = ['JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727', - 'EP159695B01', '6A'] - - # simulate three write calls out to file. Each successive call should - # append to the information already written out to file. - fsr.write(fail_set1, 'ConvertJob') - - with open(f'{self.basedir}/failed_samples.html', 'r') as f: - obs1 = f.readlines() - obs1 = [x.strip() for x in obs1] - obs1 = ''.join(obs1) - exp1 = ('Pputida_TALE__HGL_Pputida_121
ProjectSample IDFai' - 'led at
Feist_11661ConvertJob
Gerwick_61235BConvertJob
NYU_BMS_Melanoma_13059EP073160B01<' - '/td>ConvertJob
') - self.assertEqual(obs1, exp1) - - fsr.write(fail_set2, 'QCJob') - with open(f'{self.basedir}/failed_samples.html', 'r') as f: - obs2 = f.readlines() - obs2 = [x.strip() for x in obs2] - obs2 = ''.join(obs2) - exp2 = ('<' - 'td>4A<' - '/tr>
ProjectSample IDFai' - 'led at
Gerwick_6123QCJob
Feist_11661' - 'Pputida_TALE__HGL_Pputida_121ConvertJob
Gerwick_61235BConvertJob
Feist_11661Deoxyribose_PALE_ALE__MG1' - '655_Lib4_20_16QCJob
NYU_BMS_Mel' - 'anoma_13059EP202095B04QCJob
NYU_BMS_Melanoma_13059EP073160B01' - 'ConvertJob
') - self.assertEqual(obs2, exp2) - - fsr.write(fail_set3, 'FastQCJob') - with open(f'{self.basedir}/failed_samples.html', 'r') as f: - obs3 = f.readlines() - obs3 = [x.strip() for x in obs3] - obs3 = ''.join(obs3) - exp3 = ('<' - 'td>4A<' - '/tr>NYU_BMS_Melanoma_13059
ProjectSample IDFai' - 'led at
Gerwick_6123QCJob
Feist_11661' - 'Pputida_TALE__HGL_Pputida_121ConvertJob
Gerwick_61235BConvertJob
Gerwick_61236AFastQCJob
Feist_11661Deoxyribose_PALE_ALE__M' - 'G1655_Lib4_20_16QCJob
Feist_116' - '61JM-MEC__Staphylococcus_aureusstrain_BERTI-R107' - '27FastQCJob
NYU_BMS_Melanoma_13' - '059EP159695B01FastQCJob
EP202095B04QCJo' - 'b
NYU_BMS_Melanoma_13059EP07316' - '0B01ConvertJob
') - self.assertEqual(obs3, exp3) - - def test_update_blanks_in_qiita_type_inference(self): - # Ensure we gracefully handle a situation in which there are no - # blanks, and the identifiers are numeric. This is an edge case - # that should not occur, but it is worth being defensive. - sifs = ['qp_klp/tests/sample_info_file_1_bad_blanks.tsv'] - - # we are not adding in any blanks so we should not observe change - exp = self.qclient.get('/api/v1/study/1/samples') - exp = [x for x in exp if x.startswith('1.BLANK')] - - update_blanks_in_qiita(sifs, self.qclient) - - obs = self.qclient.get('/api/v1/study/1/samples') - obs = [x for x in obs if x.startswith('1.BLANK')] - - self.assertEqual(set(obs), set(exp)) - - def test_update_blanks_in_qiita(self): - sifs = ['qp_klp/tests/sample_info_file_1_blanks.tsv'] - - # there should be no blanks stored in Qiita for study 1. - # the sample sif file contains the following: - exp = ['1.BLANK.None.20C.BLANK.1', '1.BLANK.None.20C.BLANK.2', - '1.BLANK.AssayAssure.20C.BLANK.1', '1.BLANK5.12C', - '1.BLANK.AssayAssure.20C.BLANK.2', '1.BLANK5.12E', - '1.BLANK5.12F', '1.BLANK5.12D', '1.BLANK5.12G', - '1.BLANK.EtOH.20C.BLANK.1', '1.BLANK.EtOH.20C.BLANK.2', - '1.BLANK5.12H'] - - update_blanks_in_qiita(sifs, self.qclient) - - obs = self.qclient.get('/api/v1/study/1/samples') - obs = [x for x in obs if x.startswith('1.BLANK')] - - # confirm all new blanks are in Qiita as expected. - self.assertEqual(set(obs), set(exp)) - - # pull metadata for two fields, one pre-existing (host_taxid) and one - # from the SIF (empo_3). - result = self.qclient.get('/api/v1/study/1/samples/categories=' - 'host_taxid,empo_3') - obs = result['samples'] - - # Confirm that a new BLANK contains the value from empo_3 and the - # dummy-value '1' for the host_tax_id while a pre-existing sample-name - # contains 'nan' for the new field (empo_3) and an existing, non- - # dummy value for host_tax_id. - self.assertEqual(obs['1.BLANK5.12H'], ['1', 'Sterile water blank']) - self.assertEqual(obs['1.SKM7.640188'][0], '3483') - self.assertTrue(math.isnan(obs['1.SKM7.640188'][1])) - - def test_map_sample_names_to_tube_ids(self): - # create a mapping of sample-names to tube-ids. - sn_tid_map_by_proj = {'Sample_Project': {}} - sn_tid_map_by_proj['Sample_Project']['363192526'] = 'tube_id01' - sn_tid_map_by_proj['Sample_Project']['363192073'] = 'tube_id02' - sn_tid_map_by_proj['Sample_Project']['363193755'] = 'tube_id03' - sn_tid_map_by_proj['Sample_Project']['363192568'] = 'tube_id04' - sn_tid_map_by_proj['Sample_Project']['363193764'] = 'tube_id05' - sn_tid_map_by_proj['Sample_Project']['363197837'] = 'tube_id06' - sn_tid_map_by_proj['Sample_Project']['363193058'] = 'tube_id07' - sn_tid_map_by_proj['Sample_Project']['363192067'] = 'tube_id08' - sn_tid_map_by_proj['Sample_Project']['363192066'] = 'tube_id09' - sn_tid_map_by_proj['Sample_Project']['363193001'] = 'tube_id10' - sn_tid_map_by_proj['Sample_Project']['363197803'] = 'tube_id11' - sn_tid_map_by_proj['Sample_Project']['363192078'] = 'tube_id12' - sn_tid_map_by_proj['Sample_Project']['363192050'] = 'tube_id13' - sn_tid_map_by_proj['Sample_Project']['363197086'] = 'tube_id14' - sn_tid_map_by_proj['Sample_Project']['363197089'] = 'tube_id15' - sn_tid_map_by_proj['Sample_Project']['363193005'] = 'tube_id16' - sn_tid_map_by_proj['Sample_Project']['363193007'] = 'tube_id17' - sn_tid_map_by_proj['Sample_Project']['363197110'] = 'tube_id18' - sn_tid_map_by_proj['Sample_Project']['363192124'] = 'tube_id19' - sn_tid_map_by_proj['Sample_Project']['363193040'] = 'tube_id20' - sn_tid_map_by_proj['Sample_Project']['363192553'] = 'tube_id21' - sn_tid_map_by_proj['Sample_Project']['363197824'] = 'tube_id22' - sn_tid_map_by_proj['Sample_Project']['363192082'] = 'tube_id23' - sn_tid_map_by_proj['Sample_Project']['363192558'] = 'tube_id24' - sn_tid_map_by_proj['Sample_Project']['363192598'] = 'tube_id25' - sn_tid_map_by_proj['Sample_Project']['363192112'] = 'tube_id26' - sn_tid_map_by_proj['Sample_Project']['363197075'] = 'tube_id27' - sn_tid_map_by_proj['Sample_Project']['363192059'] = 'tube_id28' - sn_tid_map_by_proj['Sample_Project']['363192578'] = 'tube_id29' - sn_tid_map_by_proj['Sample_Project']['363192096'] = 'tube_id30' - sn_tid_map_by_proj['Sample_Project']['363192105'] = 'tube_id31' - sn_tid_map_by_proj['Sample_Project']['363193000'] = 'tube_id32' - sn_tid_map_by_proj['Sample_Project']['363193014'] = 'tube_id33' - sn_tid_map_by_proj['Sample_Project']['363193028'] = 'tube_id34' - sn_tid_map_by_proj['Sample_Project']['363192559'] = 'tube_id35' - sn_tid_map_by_proj['Sample_Project']['363193016'] = 'tube_id36' - sn_tid_map_by_proj['Sample_Project']['363193032'] = 'tube_id37' - sn_tid_map_by_proj['Sample_Project']['363191841'] = 'tube_id38' - sn_tid_map_by_proj['Sample_Project']['363192566'] = 'tube_id39' - sn_tid_map_by_proj['Sample_Project']['363193762'] = 'tube_id40' - sn_tid_map_by_proj['Sample_Project']['363192796'] = 'tube_id41' - sn_tid_map_by_proj['Sample_Project']['363192074'] = 'tube_id42' - sn_tid_map_by_proj['Sample_Project']['363193071'] = 'tube_id43' - sn_tid_map_by_proj['Sample_Project']['363192094'] = 'tube_id44' - sn_tid_map_by_proj['Sample_Project']['363193024'] = 'tube_id45' - sn_tid_map_by_proj['Sample_Project']['363197031'] = 'tube_id46' - sn_tid_map_by_proj['Sample_Project']['363193054'] = 'tube_id47' - sn_tid_map_by_proj['Sample_Project']['363192054'] = 'tube_id48' - sn_tid_map_by_proj['Sample_Project']['363192547'] = 'tube_id49' - - output_dir = 'qp_klp/tests' - - # make a copy of a good prep-file, and name it after the name of the - # project: 'Sample_Project'. - copy(join(output_dir, 'good-prep-file.txt'), - join(output_dir, 'Sample_Project.tsv')) - - # this is a file list w/only one output prep-file. - files_list = ['qp_klp/tests/Sample_Project.tsv'] - - # if map_sample_names_to_tube_ids() works correctly, Sample_Project.tsv - # should have the contents of its sample-name column changed to reflect - # the tube-ids above. - map_sample_names_to_tube_ids(files_list, sn_tid_map_by_proj) - - for prep_file in files_list: - # confirm prep-file loaded. - df = pd.read_csv(prep_file, delimiter='\t') - - # get a list of all column values in sample_name and confirm that - # all entries now begin w/'tube_id'. - res = df['sample_name'].tolist() - res = [x for x in res if not x.startswith('tube_id')] - self.assertEquals(len(res), 0, msg=f"'{res}' remain unchanged") - - -class KLPAmpliconTests(PluginTestCase): - def _make_temp_dir(self): - new_dir = mkdtemp() - self._clean_up_files.append(new_dir) - return new_dir - - def setUp(self): - # this will allow us to see the full errors - self.maxDiff = None - self.logger = logging.getLogger(__name__) - - plugin('https://localhost:8383', 'register', 'ignored') - sleep(2) - - self._clean_up_files = [] - - self.basedir = dirname(realpath(__file__)) - - self.multiqc_config_filepath = join(self._make_temp_dir(), - 'multiqc-config.yaml') - self.multiqc_config_data = [ - "title: 'Sequence processing summaries'\n", - "output_fn_name: 'index.html'\n", - "show_analysis_paths: False\n", - "show_analysis_time: False\n", - "run_modules:\n", - " - bclconvert\n", - " - fastqc\n", - " - fastp\n", - "sample_names_ignore:\n", - " - 'blank*'\n", - " - 'BLANK*'\n", - "no_version_check: False\n", - "plots_force_interactive: True\n", - "num_datasets_plot_limit: 1\n", - "max_table_rows: 10000\n", - "table_columns_visible:\n", - " 'Sequence Quality (bclconvert raw)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - " 'Trimming':\n", - " input_format: False\n", - " avg_sequence_length: False\n", - " total_record_count: False\n", - " mean_sequence_length: False\n", - " fraction_bp_trimmed: False\n", - " fraction_records_with_adapters: False\n", - " 'Sequence Quality (trimmed)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - " 'Human Filtering':\n", - " overall_alignment_rate: True\n", - " 'Sequence Quality (filtered)':\n", - " percent_fails: False\n", - " percent_duplicates: False\n", - " percent_gc: False\n", - " avg_sequence_length: True\n", - " total_sequences: True\n", - "module_order:\n", - " - bclconvert:\n", - " name: 'Base Calling'\n", - " info: 'Conversion from BCL files to FASTQ files.'\n", - " - fastqc:\n", - " name: 'Sequence Quality (raw)'\n", - " info: 'Sequence quality and summary statistics for raw s", - "equences.'\n", - " path_filters:\n", - " - '*fastqc.zip'\n", - " - '*.csv'\n", - " - fastp:\n", - " name: 'Sequence Quality (adapter trimmed)'\n", - " info: 'Summary statistics from adapter trimming and qual", - "ity control with fastp.'\n", - " fn: '*.json'\n", - " - fastqc:\n", - " name: 'Sequence Quality (trimmed)'\n", - " info: 'Sequence quality and summary statistics after qua", - "lity-control and adapter trimming.'\n", - " path_filters:\n", - " - '*trimmed_fastqc.zip'\n", - " - '*fastp_fastqc.zip'\n" - ] - - self.out_dir = self._make_temp_dir() - self.search_dir = self._make_temp_dir() - - spp_config = { - "configuration": { - "pipeline": { - "younger_than": 90, - "older_than": 24, - "archive_path": '/not/out_dir', - "search_paths": [self.search_dir], - "amplicon_search_paths": [self.search_dir] - }, - "bcl2fastq": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bcl2fastq_2.20.0.422"], - "executable_path": "bcl2fastq", - "per_process_memory_limit": "10gb" - }, - "bcl-convert": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bclconvert_3.7.5"], - "executable_path": "bcl-convert", - "per_process_memory_limit": "10gb" - }, - "qc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 1, - "minimap_databases": [("/databases/minimap2/human-phix-db." - "mmi")], - "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", - "modules_to_load": ["fastp_0.20.1", "samtools_1.12", - "minimap2_2.18"], - "fastp_executable_path": "fastp", - "minimap2_executable_path": "minimap2", - "samtools_executable_path": "samtools", - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - }, - "seqpro": { - "seqpro_path": "seqpro", - "modules_to_load": [] - }, - "fastqc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "nthreads": 16, - "wallclock_time_in_hours": 1, - "modules_to_load": ["fastqc_0.11.5"], - "fastqc_executable_path": "fastqc", - "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": self.multiqc_config_filepath, - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - } - } - } - - # create the file and write the configuration out to disk - # for use by sequence_processing_pipeline(). - config_filepath = environ['QP_KLP_CONFIG_FP'] - - with open(config_filepath, 'w') as f: - f.write(dumps(spp_config, indent=2)) - - def tearDown(self): - for fp in self._clean_up_files: - if exists(fp): - if isdir(fp): - rmtree(fp) - else: - remove(fp) - - def _get_uploads_path(self): - # determine expected uploads directory using self.basedir. - tmp = self.basedir - - for i in range(0, 2): - tmp = split(tmp)[0] - - return join(tmp, 'qiita-dev', 'qiita_db', 'support_files', 'test_data', - 'uploads', '1') - - def test_sequence_processing_pipeline(self): - self.maxDiff = None - test_dir = join(self.search_dir, "230224_M05314_0347_000000000-KVMH3") - makedirs(test_dir) - - # create the sentinel files ConvertJob will check for. - with open(join(test_dir, 'RTAComplete.txt'), 'w') as f: - f.write("Hello World\n") - - # copy example RunInfo.xml into its proper location for testing. - copy(f'{self.basedir}/RunInfo.xml', join(test_dir, 'RunInfo.xml')) - - # create the project directory sequence_processing_pipeline() will - # expect to find fastq files in. Note amplicon pipeline expects - # fastq files in ConvertJob folder, rather than ConvertJob/{Project} - # folders. - fastq_dir = join(self.out_dir, 'ConvertJob') - makedirs(fastq_dir) - - file_list = [("230224_M05314_0347_000000000-KVMH3_SMPL1_S1_" - "L001_I1_001.fastq.gz"), - ("230224_M05314_0347_000000000-KVMH3_SMPL1_S1_" - "L001_R1_001.fastq.gz"), - ("230224_M05314_0347_000000000-KVMH3_SMPL1_S1_" - "L001_R2_001.fastq.gz")] - - for fastq_file in file_list: - fp = join(fastq_dir, fastq_file) - with open(fp, 'w') as f: - f.write("Hello World\n") - - # write multi-qc config file to a known location - with open(self.multiqc_config_filepath, 'w') as f: - for line in self.multiqc_config_data: - f.write(f"{line}\n") - - # create the Reports directory in the location GenPrepFileJob - # expects. - reports_dir = join(self.out_dir, 'ConvertJob', 'Reports') - makedirs(reports_dir, exist_ok=True) - - # create GenPrepFileJob output directory for use by packaging code and - # downstream-testing. - gp_root_fp = join(self.out_dir, 'GenPrepFileJob') - prep_files_root_fp = join(gp_root_fp, 'PrepFiles') - makedirs(prep_files_root_fp, exist_ok=True) - prep_file_name = ('230224_M05314_0347_000000000-KVMH3.' - 'ABTX_20230227_11052.1.tsv') - - # copy sample prep-info file into position. - copy(join(self.basedir, prep_file_name), - join(prep_files_root_fp, prep_file_name)) - - # the only difference between this test and test_spp_no_qiita_id_error - # is project_names are missing qiita_id in bad_mapping_file.txt. - with open(f'{self.basedir}/good_mapping_file.txt', 'r') as f: - mapping_file = f.readlines() - mapping_file = ''.join(mapping_file) - - params = {"run_identifier": "230224_M05314_0347_000000000-KVMH3", - "sample_sheet": { - "body": mapping_file, - "content_type": "text/plain", - # verify sequence_processing_pipeline() will convert - # spaces to underscores ('_'). - "filename": "A sample sheet.csv", - }, - "lane_number": 1} - - data = { - "user": "demo@microbio.me", - "command": dumps(["qp-klp", __version__, - "Sequence Processing Pipeline"]), - "status": "running", - "parameters": dumps(params), - } - - job_id = self.qclient.post("/apitest/processing_job/", - data=data)["job"] - - success, _, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir - ) - - # on error, it is beneficial to report the msg. - self.assertEqual(msg, 'Main Pipeline Finished, processing results') - self.assertTrue(success) - - # confirm that 'cmds.log' exists. - cmd_log_fp = join(self.out_dir, 'cmds.log') - self.assertTrue(exists(cmd_log_fp)) - - # confirm that fastq files were copied to uploads directory. - - uploads_fp = self._get_uploads_path() - - for some_file in file_list: - some_path = join(uploads_fp, some_file) - self.assertTrue(exists(some_path)) - - # confirm that an output directory named 'final_results' was created - # by the pipeline and that 'prep_files.tgz' is one of the products - # inside. - self.assertTrue(exists(join(self.out_dir, 'final_results', - 'prep-files.tgz'))) - - # confirm touched_studies.html was generated. - fp = join(self.out_dir, 'final_results', 'touched_studies.html') - self.assertTrue(exists(fp)) - - with open(fp) as f: - obs = f.readlines() - obs = [x.strip() for x in obs] - - # confirm touched_studies.html looks as expected, including prep-info - # links. - exp = ['', '', - '', '', - '', '', - '', '', '', - '', '', '', '', - '', '', - (''), - (''), '', '', - '
ProjectQiita Study IDQiita Prep IDQiita URLPrep URL
Feist_113https://localhost:21174/study/description/1' - 'https://localhost:21174/study/' - 'description/1?prep_id=3
'] - - self.assertEqual(obs, exp) - - # confirm prep info was inserted into Qiita and looks as intended. - obs = self.qclient.get("/qiita_db/prep_template/%s/data/" % 3) - - exp = {'data': {'1.SKB8.640193': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq', - 'qiita_prep_id': '3'}, - '1.SKD8.640184': {'primer': 'GTGCCAGCMGCCGCGGTAA', - 'barcode': 'GTCCGCAAGTTA', - 'platform': 'Illumina', - 'instrument_model': 'Illumina MiSeq', - 'qiita_prep_id': '3'}}} - - self.assertDictEqual(obs, exp) - - def test_spp_no_qiita_id_error(self): - test_dir = join(self.search_dir, "230224_M05314_0347_000000000-KVMH3") - makedirs(test_dir) - - # create the sentinel files ConvertJob will check for. - with open(join(test_dir, 'RTAComplete.txt'), 'w') as f: - f.write("Hello World\n") - - # copy example RunInfo.xml into its proper location for testing. - copy(f'{self.basedir}/RunInfo.xml', join(test_dir, 'RunInfo.xml')) - - # create the project directory sequence_processing_pipeline() will - # expect to find fastq files in. Note amplicon pipeline expects - # fastq files in ConvertJob folder, rather than ConvertJob/{Project} - # folders. - fastq_dir = join(self.out_dir, 'ConvertJob') - makedirs(fastq_dir) - - file_list = ["CDPH-SAL_Salmonella_Typhi_MDL-143_R1_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-143_R2_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-144_R1_.fastq.gz", - "CDPH-SAL_Salmonella_Typhi_MDL-144_R2_.fastq.gz"] - - for fastq_file in file_list: - fp = join(fastq_dir, fastq_file) - with open(fp, 'w') as f: - f.write("Hello World\n") - - # write multi-qc config file to a known location - with open(self.multiqc_config_filepath, 'w') as f: - for line in self.multiqc_config_data: - f.write(f"{line}\n") - - # create the Reports directory in the location GenPrepFileJob - # expects. - reports_dir = join(self.out_dir, 'ConvertJob', 'Reports') - makedirs(reports_dir, exist_ok=True) - - with open(f'{self.basedir}/bad_mapping_file.txt', 'r') as f: - mapping_file = f.readlines() - mapping_file = ''.join(mapping_file) - - params = {"run_identifier": "230224_M05314_0347_000000000-KVMH3", - "sample_sheet": { - "body": mapping_file, - "content_type": "text/plain", - # verify sequence_processing_pipeline() will convert - # spaces to underscores ('_'). - "filename": "A sample sheet.csv", - }, - "lane_number": 1} - - data = { - "user": "demo@microbio.me", - "command": dumps(["qp-klp", __version__, - "Sequence Processing Pipeline"]), - "status": "running", - "parameters": dumps(params), - } - - job_id = self.qclient.post("/apitest/processing_job/", - data=data)["job"] - - success, _, msg = sequence_processing_pipeline( - self.qclient, job_id, params, self.out_dir - ) - - self.assertEqual(msg, "Values in the project_name column must be " - "appended with a Qiita ID.") - self.assertFalse(success) - - -if __name__ == "__main__": - main() diff --git a/qp_klp/tests/test_klp_util.py b/qp_klp/tests/test_klp_util.py index d420447c..ef4a778f 100644 --- a/qp_klp/tests/test_klp_util.py +++ b/qp_klp/tests/test_klp_util.py @@ -11,6 +11,27 @@ class KLPUtilTests(TestCase): + def test_update_blanks_in_qiita(self): + pass + + def test_map_sample_names_to_tube_ids(self): + pass + + def test_update_sample_sheet(self): + pass + + def test_generate_special_map(self): + pass + + def test_generate_pipeline(self): + pass + + def test_update_prep_templates(self): + pass + + def test_get_registered_samples_in_qiita(self): + pass + def test_parse_prep_file(self): good_prep_file = join('qp_klp', 'tests', 'good-prep-file-small.txt') diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py new file mode 100644 index 00000000..e4dae6b8 --- /dev/null +++ b/qp_klp/tests/test_step.py @@ -0,0 +1,15 @@ +# ----------------------------------------------------------------------------- +# Copyright (c) 2014--, The Qiita Development Team. +# +# Distributed under the terms of the BSD 3-clause License. +# +# The full license is in the file LICENSE, distributed with this software. +# ----------------------------------------------------------------------------- +from unittest import TestCase +from qp_klp.Step import Step + + +class BaseStepTests(TestCase): + def test_creation(self): + step = Step(None, None, None, None) + self.assertFalse(step is None) From d5196c2835d21083c8db8b9a94f69b05336143cb Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 10:45:26 -0700 Subject: [PATCH 04/35] Added support for base Step tests --- qp_klp/AmpliconStep.py | 8 +- qp_klp/MetagenomicStep.py | 4 +- qp_klp/Step.py | 15 +- .../211021_A00000_0000_SAMPLE/RTAComplete.txt | 1 + .../211021_A00000_0000_SAMPLE/RunInfo.xml | 1 + qp_klp/tests/data/good-sample-sheet.csv | 814 ++++++++++++++++++ qp_klp/tests/test_step.py | 62 +- 7 files changed, 895 insertions(+), 10 deletions(-) create mode 100644 qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt create mode 100644 qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml create mode 100644 qp_klp/tests/data/good-sample-sheet.csv diff --git a/qp_klp/AmpliconStep.py b/qp_klp/AmpliconStep.py index fab6b7b7..595f562d 100644 --- a/qp_klp/AmpliconStep.py +++ b/qp_klp/AmpliconStep.py @@ -5,12 +5,12 @@ class AmpliconStep(Step): - def __init__(self, pipeline, master_qiita_job_id, status_update_callback, - sn_tid_map_by_project): + def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, + status_update_callback=None): super().__init__(pipeline, master_qiita_job_id, - status_update_callback, - sn_tid_map_by_project) + sn_tid_map_by_project, + status_update_callback) def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl2fastq'] diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index 86ed2f22..c803a366 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -7,8 +7,8 @@ class MetagenomicStep(Step): - def __init__(self, pipeline, master_qiita_job_id, status_update_callback, - sn_tid_map_by_project): + def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, + status_update_callback=None): super().__init__(pipeline, master_qiita_job_id, status_update_callback, diff --git a/qp_klp/Step.py b/qp_klp/Step.py index 5528f00c..df6ffe88 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -18,8 +18,19 @@ class Step: subclass and makes calls to this base class as needed. In this way the codebase is kept DRY. ''' - def __init__(self, pipeline, master_qiita_job_id, status_update_callback, - sn_tid_map_by_project): + def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, + status_update_callback=None): + + if pipeline is None: + raise ValueError("A pipeline object is needed to initialize Step") + + if master_qiita_job_id is None: + raise ValueError("A Qiita job-id is needed to initialize Step") + + if sn_tid_map_by_project is None: + raise ValueError("sn_tid_map_by_project is needed to initialize" + " Step") + self.pipeline = pipeline self.master_qiita_job_id = master_qiita_job_id self.status_update_callback = status_update_callback diff --git a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt new file mode 100644 index 00000000..90bfcb51 --- /dev/null +++ b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RTAComplete.txt @@ -0,0 +1 @@ +this is a test diff --git a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml new file mode 100644 index 00000000..90bfcb51 --- /dev/null +++ b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml @@ -0,0 +1 @@ +this is a test diff --git a/qp_klp/tests/data/good-sample-sheet.csv b/qp_klp/tests/data/good-sample-sheet.csv new file mode 100644 index 00000000..0d406603 --- /dev/null +++ b/qp_klp/tests/data/good-sample-sheet.csv @@ -0,0 +1,814 @@ +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +Investigator Name,Knight,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,, +Date,2020-02-26,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Metagenomic,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL_Salmonella_Typhi_MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL_Salmonella_Typhi_MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL_Salmonella_Typhi_MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL_Salmonella_Typhi_MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL_Salmonella_Typhi_MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL_Salmonella_Typhi_MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL_Salmonella_Typhi_MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL_Salmonella_Typhi_MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-153 +1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL_Salmonella_Typhi_MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-154 +1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL_Salmonella_Typhi_MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-155 +1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL_Salmonella_Typhi_MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-156 +1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL_Salmonella_Typhi_MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-157 +1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL_Salmonella_Typhi_MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-158 +1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL_Salmonella_Typhi_MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-159 +1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL_Salmonella_Typhi_MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-160 +1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL_Salmonella_Typhi_MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-161 +1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL_Salmonella_Typhi_MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-162 +1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL_Salmonella_Typhi_MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-163 +1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL_Salmonella_Typhi_MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-164 +1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL_Salmonella_Typhi_MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-165 +1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL_Salmonella_Typhi_MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-166 +1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL_Salmonella_Typhi_MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-167 +1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL_Salmonella_Typhi_MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-168 +1,P21_E_coli_ELI344,P21_E_coli_ELI344,Feist_11661_P40,E7,iTru7_109_09,AGTCGCTT,iTru5_03_C,CACAGGAA,Feist_11661,P21_E. coli_ELI344 +1,P21_E_coli_ELI345,P21_E_coli_ELI345,Feist_11661_P40,G7,iTru7_109_10,TGGCACTA,iTru5_04_C,CCATGAAC,Feist_11661,P21_E. coli_ELI345 +1,P21_E_coli_ELI347,P21_E_coli_ELI347,Feist_11661_P40,I7,iTru7_109_11,GGTTGTCA,iTru5_05_C,GCCAATAC,Feist_11661,P21_E. coli_ELI347 +1,P21_E_coli_ELI348,P21_E_coli_ELI348,Feist_11661_P40,K7,iTru7_109_12,AACCTCCT,iTru5_06_C,AGCTACCA,Feist_11661,P21_E. coli_ELI348 +1,P21_E_coli_ELI349,P21_E_coli_ELI349,Feist_11661_P40,M7,iTru7_110_01,ATGACCAG,iTru5_07_C,AACCGAAC,Feist_11661,P21_E. coli_ELI349 +1,P21_E_coli_ELI350,P21_E_coli_ELI350,Feist_11661_P40_diluted,O7,iTru7_110_02,AACCGTTC,iTru5_08_C,ATCGCAAC,Feist_11661,P21_E. coli_ELI350 +1,P21_E_coli_ELI351,P21_E_coli_ELI351,Feist_11661_P40,A9,iTru7_110_03,TCCAATCG,iTru5_09_C,GTTGCTGT,Feist_11661,P21_E. coli_ELI351 +1,P21_E_coli_ELI352,P21_E_coli_ELI352,Feist_11661_P40,C9,iTru7_110_04,CTGCACTT,iTru5_10_C,TCTAGTCC,Feist_11661,P21_E. coli_ELI352 +1,P21_E_coli_ELI353,P21_E_coli_ELI353,Feist_11661_P40,E9,iTru7_110_05,CGCTTAAC,iTru5_11_C,GACGAACT,Feist_11661,P21_E. coli_ELI353 +1,P21_E_coli_ELI354,P21_E_coli_ELI354,Feist_11661_P40,G9,iTru7_110_06,CACCACTA,iTru5_12_C,TTCGTACG,Feist_11661,P21_E. coli_ELI354 +1,P21_E_coli_ELI355,P21_E_coli_ELI355,Feist_11661_P40,I9,iTru7_110_07,ACAGCAAC,iTru5_01_D,CGACACTT,Feist_11661,P21_E. coli_ELI355 +1,P21_E_coli_ELI357,P21_E_coli_ELI357,Feist_11661_P40,K9,iTru7_110_08,GGAAGGAT,iTru5_02_D,AGACGCTA,Feist_11661,P21_E. coli_ELI357 +1,P21_E_coli_ELI358,P21_E_coli_ELI358,Feist_11661_P40_diluted,M9,iTru7_110_09,GGCGTTAT,iTru5_03_D,TGACAACC,Feist_11661,P21_E. coli_ELI358 +1,P21_E_coli_ELI359,P21_E_coli_ELI359,Feist_11661_P40,O9,iTru7_110_10,CTGTTGAC,iTru5_04_D,GGTACTTC,Feist_11661,P21_E. coli_ELI359 +1,P21_E_coli_ELI361,P21_E_coli_ELI361,Feist_11661_P40_diluted,A11,iTru7_110_11,GTCATCGA,iTru5_05_D,CTGTATGC,Feist_11661,P21_E. coli_ELI361 +1,P21_E_coli_ELI362,P21_E_coli_ELI362,Feist_11661_P40,C11,iTru7_110_12,TGACTTCG,iTru5_06_D,TCGACAAG,Feist_11661,P21_E. coli_ELI362 +1,P21_E_coli_ELI363,P21_E_coli_ELI363,Feist_11661_P40_diluted,E11,iTru7_111_01,CGATAGAG,iTru5_07_D,GCTGAATC,Feist_11661,P21_E. coli_ELI363 +1,P21_E_coli_ELI364,P21_E_coli_ELI364,Feist_11661_P40,G11,iTru7_111_02,TTCGTTGG,iTru5_08_D,AGTTGTGC,Feist_11661,P21_E. coli_ELI364 +1,P21_E_coli_ELI365,P21_E_coli_ELI365,Feist_11661_P40,I11,iTru7_111_03,TGGAGAGT,iTru5_09_D,TGTCGACT,Feist_11661,P21_E. coli_ELI365 +1,P21_E_coli_ELI366,P21_E_coli_ELI366,Feist_11661_P40_diluted,K11,iTru7_111_04,TCAGACGA,iTru5_10_D,AAGGCTCT,Feist_11661,P21_E. coli_ELI366 +1,P21_E_coli_ELI367,P21_E_coli_ELI367,Feist_11661_P40_diluted,M11,iTru7_111_05,GACGAATG,iTru5_11_D,CCTAACAG,Feist_11661,P21_E. coli_ELI367 +1,P21_E_coli_ELI368,P21_E_coli_ELI368,Feist_11661_P40,O11,iTru7_111_06,CATGAGGA,iTru5_12_D,AAGACGAG,Feist_11661,P21_E. coli_ELI368 +1,P21_E_coli_ELI369,P21_E_coli_ELI369,Feist_11661_P40,A13,iTru7_111_07,CGGTTGTT,iTru5_01_E,GACTTGTG,Feist_11661,P21_E. coli_ELI369 +1,stALE_E_coli_A1_F21_I1_R1,stALE_E_coli_A1_F21_I1_R1,Feist_11661_P40,C13,iTru7_111_08,TCCGTATG,iTru5_02_E,CAACTCCA,Feist_11661,stALE_E. coli_A1.F21.I1.R1 +1,stALE_E_coli_A2_F21_I1_R1,stALE_E_coli_A2_F21_I1_R1,Feist_11661_P40,E13,iTru7_111_09,TGTGGTAC,iTru5_03_E,TGTTCCGT,Feist_11661,stALE_E. coli_A2.F21.I1.R1 +1,stALE_E_coli_A3_F18_I1_R1,stALE_E_coli_A3_F18_I1_R1,Feist_11661_P40,G13,iTru7_111_10,AGAACGAG,iTru5_04_E,ACCGCTAT,Feist_11661,stALE_E. coli_A3.F18.I1.R1 +1,stALE_E_coli_A3_F40_I1_R1,stALE_E_coli_A3_F40_I1_R1,Feist_11661_P40,I13,iTru7_111_11,CTTCGTTC,iTru5_05_E,CTTAGGAC,Feist_11661,stALE_E. coli_A3.F40.I1.R1 +1,stALE_E_coli_A4_F21_I1_R1,stALE_E_coli_A4_F21_I1_R1,Feist_11661_P40,K13,iTru7_111_12,CCAATAGG,iTru5_06_E,TATGACCG,Feist_11661,stALE_E. coli_A4.F21.I1.R1 +1,stALE_E_coli_A4_F21_I1_R2,stALE_E_coli_A4_F21_I1_R2,Feist_11661_P40,M13,iTru7_112_01,ACCATCCA,iTru5_07_E,AGCTAGTG,Feist_11661,stALE_E. coli_A4.F21.I1.R2 +1,stALE_E_coli_A4_F42_I1_R1,stALE_E_coli_A4_F42_I1_R1,Feist_11661_P40,O13,iTru7_112_02,CACACATG,iTru5_08_E,GAACGAAG,Feist_11661,stALE_E. coli_A4.F42.I1.R1 +1,stALE_E_coli_A5_F21_I1_R1,stALE_E_coli_A5_F21_I1_R1,Feist_11661_P40,A15,iTru7_112_03,CTTGTCGA,iTru5_09_E,CGTCTAAC,Feist_11661,stALE_E. coli_A5.F21.I1.R1 +1,stALE_E_coli_A5_F42_I1_R1,stALE_E_coli_A5_F42_I1_R1,Feist_11661_P40,C15,iTru7_112_04,AGTCTCAC,iTru5_10_E,AACCAGAG,Feist_11661,stALE_E. coli_A5.F42.I1.R1 +1,stALE_E_coli_A6_F21_I1_R1,stALE_E_coli_A6_F21_I1_R1,Feist_11661_P40,E15,iTru7_112_05,AGTTGGCT,iTru5_11_E,CGCCTTAT,Feist_11661,stALE_E. coli_A6.F21.I1.R1 +1,stALE_E_coli_A6_F43_I1_R1,stALE_E_coli_A6_F43_I1_R1,Feist_11661_P40,G15,iTru7_112_06,CCGGAATT,iTru5_12_E,CTCGTTCT,Feist_11661,stALE_E. coli_A6.F43.I1.R1 +1,stALE_E_coli_A7_F21_I1_R1,stALE_E_coli_A7_F21_I1_R1,Feist_11661_P40,I15,iTru7_112_07,CAGTGAAG,iTru5_01_F,GTGAGACT,Feist_11661,stALE_E. coli_A7.F21.I1.R1 +1,stALE_E_coli_A7_F42_I1_R1,stALE_E_coli_A7_F42_I1_R1,Feist_11661_P40,K15,iTru7_112_08,CCTACTGA,iTru5_02_F,AACACGCT,Feist_11661,stALE_E. coli_A7.F42.I1.R1 +1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 +1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 +1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 +1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 +1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 +1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 +1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 +1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 +1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 +1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 +1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 +1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 +1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 +1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 +1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 +1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 +1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 +1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 +1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 +1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 +1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 +1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 +1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 +1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 +1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 +1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 +1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 +1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 +1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 +1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 +1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick_6123,3A +1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick_6123,4A +1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G +1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H +1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 +1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 +1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 +1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 +1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 +1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 +1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 +1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 +1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 +1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 +1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 +1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 +1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 +1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 +1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 +1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 +1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 +1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 +1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 +1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 +1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 +1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 +1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 +1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 +1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 +1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 +1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 +1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 +1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 +1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 +1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 +1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 +1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 +1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 +1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 +1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 +1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 +1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 +1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 +1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 +1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 +1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 +1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 +1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 +1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 +1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 +1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 +1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 +1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 +1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 +1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,6A +1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,BLANK.41.12G +1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,8A +1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G +1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,GFR +1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G +1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A +1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B +1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C +1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D +1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E +1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F +1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G +1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 +1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A +1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B +1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C +1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D +1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E +1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F +1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G +1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 +1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A +1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B +1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C +1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D +1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E +1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F +1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G +1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 +1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 +1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 +1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A +1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B +1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C +1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D +1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E +1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F +1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G +1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 +,,,,,,,,,, +[Bioinformatics],,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,, +,,,,,,,,,, +[Contact],,,,,,,,,, +Email,Sample_Project,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,, +,,,,,,,,,, diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index e4dae6b8..21d5bfd9 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -7,9 +7,67 @@ # ----------------------------------------------------------------------------- from unittest import TestCase from qp_klp.Step import Step +from sequence_processing_pipeline.Pipeline import Pipeline +from os.path import join, abspath +from functools import partial class BaseStepTests(TestCase): def test_creation(self): - step = Step(None, None, None, None) - self.assertFalse(step is None) + # Test base-class creation method, even though base-class will never + # be instantiated by itself in normal usage. + package_root = abspath('./qp_klp') + self.path = partial(join, package_root, 'tests', 'data') + self.good_config_file = join(package_root, 'configuration.json') + self.good_run_id = '211021_A00000_0000_SAMPLE' + self.good_sample_sheet_path = self.path('good-sample-sheet.csv') + self.output_file_path = self.path('output_dir') + self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + + pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, None, + self.output_file_path, self.qiita_id, + 'metagenomic', None) + + # TODO: Note we don't do much with this variable yet. + sn_tid_map_by_project = {} + + with self.assertRaisesRegex(ValueError, "A pipeline object is needed" + " to initialize Step"): + Step(None, self.qiita_id, sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " + "initialize Step"): + Step(pipeline, None, sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " + "needed to initialize Step"): + Step(pipeline, self.qiita_id, None, None) + + def test_convert_bcl_to_fastq(self): + pass + + def test_quality_control(self): + pass + + def test_generate_reports(self): + pass + + def test_generate_prep_file(self): + pass + + def test_generate_commands(self): + pass + + def test_write_commands_to_output_path(self): + pass + + def test_execute_commands(self): + pass + + def test_generate_sifs(self): + pass + + def test_get_prep_file_paths(self): + pass + From 773c9baa6718d4d264b1a94ebc9d196042d24313 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 10:49:31 -0700 Subject: [PATCH 05/35] Ensure output_dir is created --- qp_klp/tests/test_step.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 21d5bfd9..6f605f62 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -10,6 +10,7 @@ from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath from functools import partial +from os import makedirs class BaseStepTests(TestCase): @@ -23,6 +24,7 @@ def test_creation(self): self.good_sample_sheet_path = self.path('good-sample-sheet.csv') self.output_file_path = self.path('output_dir') self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + makedirs(self.output_file_path, exist_ok=True) pipeline = Pipeline(self.good_config_file, self.good_run_id, self.good_sample_sheet_path, None, From f19918927e347267b95c623ce88a6b05ff341529 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 11:44:55 -0700 Subject: [PATCH 06/35] bugfix --- qp_klp/Step.py | 2 +- qp_klp/tests/test_step.py | 1 - 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/qp_klp/Step.py b/qp_klp/Step.py index df6ffe88..370e0afa 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -29,7 +29,7 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, if sn_tid_map_by_project is None: raise ValueError("sn_tid_map_by_project is needed to initialize" - " Step") + " Step") self.pipeline = pipeline self.master_qiita_job_id = master_qiita_job_id diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 6f605f62..26d8eea7 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -72,4 +72,3 @@ def test_generate_sifs(self): def test_get_prep_file_paths(self): pass - From 6fd27d226042ce05a592327d476c2c00c0f3898d Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 11:53:20 -0700 Subject: [PATCH 07/35] Temporarily set mg-scripts dependency to development version --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 338d4805..5d501ef3 100644 --- a/setup.py +++ b/setup.py @@ -51,6 +51,6 @@ 'qiita_client @ https://github.com/' 'qiita-spots/qiita_client/archive/master.zip', 'sequence-processing-pipeline @ https://github.com/' - 'biocore/mg-scripts/archive/master.zip'], + 'charles-cowart/mg-scripts/archive/support_plugin_refactoring.zip'], dependency_links=[], classifiers=classifiers) From 2ba2bc6059961c4316009aaad678d8a2c3b2e038 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 12:34:56 -0700 Subject: [PATCH 08/35] .gitignore fix --- .gitignore | 3 -- qp_klp/configuration.json | 60 +++++++++++++++++++++++++++++++++++++++ setup.py | 3 +- 3 files changed, 62 insertions(+), 4 deletions(-) create mode 100644 qp_klp/configuration.json diff --git a/.gitignore b/.gitignore index 2e631319..b6e47617 100644 --- a/.gitignore +++ b/.gitignore @@ -127,6 +127,3 @@ dmypy.json # Pyre type checker .pyre/ - -# Plugin configuration file -configuration.json diff --git a/qp_klp/configuration.json b/qp_klp/configuration.json new file mode 100644 index 00000000..99f623a4 --- /dev/null +++ b/qp_klp/configuration.json @@ -0,0 +1,60 @@ +{ + "configuration": { + "pipeline": { + "archive_path": "sequence_processing_pipeline/tests/data/sequencing/knight_lab_completed_runs", + "search_paths": [ "/tmp", "qp_klp/tests/data"], + "amplicon_search_paths": [ "/tmp", "qp_klp/tests/data"] + }, + "bcl2fastq": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 36, + "modules_to_load": ["bcl2fastq_2.20.0.422"], + "executable_path": "bcl2fastq", + "per_process_memory_limit": "10gb" + }, + "bcl-convert": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 36, + "modules_to_load": ["bclconvert_3.7.5"], + "executable_path": "bcl-convert", + "per_process_memory_limit": "10gb" + }, + "qc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 1, + "minimap_databases": ["/databases/minimap2/human-phix-db.mmi"], + "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", " minimap2_2.18"], + "fastp_executable_path": "fastp", + "minimap2_executable_path": "minimap2", + "samtools_executable_path": "samtools", + "job_total_memory_limit": "20gb", + "job_pool_size": 30, + "job_max_array_length": 1000 + }, + "seqpro": { + "seqpro_path": "seqpro", + "modules_to_load": [] + }, + "fastqc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "nthreads": 16, + "wallclock_time_in_hours": 1, + "modules_to_load": ["fastqc_0.11.5"], + "fastqc_executable_path": "fastqc", + "multiqc_executable_path": "multiqc", + "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", + "job_total_memory_limit": "20gb", + "job_pool_size": 30, + "job_max_array_length": 1000 + } + } +} diff --git a/setup.py b/setup.py index 5d501ef3..6b628432 100644 --- a/setup.py +++ b/setup.py @@ -51,6 +51,7 @@ 'qiita_client @ https://github.com/' 'qiita-spots/qiita_client/archive/master.zip', 'sequence-processing-pipeline @ https://github.com/' - 'charles-cowart/mg-scripts/archive/support_plugin_refactoring.zip'], + 'charles-cowart/mg-scripts/archive/' + 'support_plugin_refactoring.zip'], dependency_links=[], classifiers=classifiers) From b740b0d25ad90607a8dd7fd2de7ff9d572d684a1 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 16:25:58 -0700 Subject: [PATCH 09/35] First test w/pseudo job-submission added. --- qp_klp/Step.py | 15 ++++++---- qp_klp/tests/test_step.py | 60 ++++++++++++++++++++++++++++++++------- 2 files changed, 59 insertions(+), 16 deletions(-) diff --git a/qp_klp/Step.py b/qp_klp/Step.py index 370e0afa..6df7faa3 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -33,7 +33,12 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, self.pipeline = pipeline self.master_qiita_job_id = master_qiita_job_id - self.status_update_callback = status_update_callback + + if status_update_callback is not None: + self.update_callback = status_update_callback.update_job_status + else: + self.update_callback = None + # for now, hardcode this at the legacy value, since we've never # changed it. self.job_pool_size = 30 @@ -57,7 +62,7 @@ def _convert_bcl_to_fastq(self, config, input_file_path): config['modules_to_load'], self.master_qiita_job_id) - convert_job.run(callback=self.status_update_callback.update_job_status) + convert_job.run(callback=self.update_callback) return convert_job @@ -80,7 +85,7 @@ def _quality_control(self, config, input_file_path): self.job_pool_size, config['job_max_array_length']) - qc_job.run(callback=self.status_update_callback.update_job_status) + qc_job.run(callback=self.update_callback) return qc_job @@ -103,7 +108,7 @@ def _generate_reports(self, config, input_file_path): config['job_max_array_length'], self.pipeline.type == 'amplicon') - fastqc_job.run(callback=self.status_update_callback.update_job_status) + fastqc_job.run(callback=self.update_callback) return fastqc_job @@ -123,7 +128,7 @@ def _generate_prep_file(self, config, input_file_path, seqpro_path, self.master_qiita_job_id, is_amplicon=is_amplicon) - gpf_job.run(callback=self.status_update_callback.update_job_status) + gpf_job.run(callback=self.update_callback) # concatenate the lists of paths across all study_ids into a single # list. Replace sample-names w/tube-ids in all relevant prep-files. diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 26d8eea7..d3ec7d52 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -10,13 +10,12 @@ from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath from functools import partial -from os import makedirs +from os import makedirs, chmod +import json class BaseStepTests(TestCase): - def test_creation(self): - # Test base-class creation method, even though base-class will never - # be instantiated by itself in normal usage. + def setUp(self): package_root = abspath('./qp_klp') self.path = partial(join, package_root, 'tests', 'data') self.good_config_file = join(package_root, 'configuration.json') @@ -26,10 +25,17 @@ def test_creation(self): self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) - pipeline = Pipeline(self.good_config_file, self.good_run_id, - self.good_sample_sheet_path, None, - self.output_file_path, self.qiita_id, - 'metagenomic', None) + self.pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, None, + self.output_file_path, self.qiita_id, + 'metagenomic', None) + + tmp = json.load(open(self.good_config_file, 'r'))['configuration'] + self.config = tmp + + def test_creation(self): + # Test base-class creation method, even though base-class will never + # be instantiated by itself in normal usage. # TODO: Note we don't do much with this variable yet. sn_tid_map_by_project = {} @@ -40,14 +46,46 @@ def test_creation(self): with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " "initialize Step"): - Step(pipeline, None, sn_tid_map_by_project, None) + Step(self.pipeline, None, sn_tid_map_by_project, None) with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " "needed to initialize Step"): - Step(pipeline, self.qiita_id, None, None) + Step(self.pipeline, self.qiita_id, None, None) + + step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) def test_convert_bcl_to_fastq(self): - pass + sn_tid_map_by_project = {} + step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) + + fake_path = join(self.output_file_path, 'ConvertJob', 'logs', 'sbatch') + + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999999\n'") + + chmod(fake_path, 0o777) + + fake_path = join(abspath('.'), 'sacct') + + with open(fake_path, 'w') as f: + f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" + "COMPLETED|09:53:41|0:0'") + + chmod(fake_path, 0o777) + + fake_path = join(abspath('.'), 'sbatch') + + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999998\n'") + + chmod(fake_path, 0o777) + + job = step._convert_bcl_to_fastq(self.config['bcl-convert'], + self.good_sample_sheet_path) + + + + def test_quality_control(self): pass From 01d2f3d1fed20b7b2504df8870571e51eeec3b7a Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 16:47:42 -0700 Subject: [PATCH 10/35] CI Fixes --- qp_klp/tests/test_step.py | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index d3ec7d52..d44ce3b3 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -52,7 +52,7 @@ def test_creation(self): "needed to initialize Step"): Step(self.pipeline, self.qiita_id, None, None) - step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) + Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) def test_convert_bcl_to_fastq(self): sn_tid_map_by_project = {} @@ -60,6 +60,10 @@ def test_convert_bcl_to_fastq(self): fake_path = join(self.output_file_path, 'ConvertJob', 'logs', 'sbatch') + fake_path = fake_path.replace(('qp-knight-lab-processing/' + 'qp-knight-lab-processing'), + 'qp-knight-lab-processing') + with open(fake_path, 'w') as f: f.write("echo 'Submitted batch job 9999999\n'") @@ -80,12 +84,8 @@ def test_convert_bcl_to_fastq(self): chmod(fake_path, 0o777) - job = step._convert_bcl_to_fastq(self.config['bcl-convert'], - self.good_sample_sheet_path) - - - - + step._convert_bcl_to_fastq(self.config['bcl-convert'], + self.good_sample_sheet_path) def test_quality_control(self): pass From 537cc7e9c0e00e5dcd75ebf2596abc6899af3cb8 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 18:13:36 -0700 Subject: [PATCH 11/35] Fix for CI --- qp_klp/tests/test_step.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index d44ce3b3..9a9f0d5b 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -58,12 +58,16 @@ def test_convert_bcl_to_fastq(self): sn_tid_map_by_project = {} step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) - fake_path = join(self.output_file_path, 'ConvertJob', 'logs', 'sbatch') + fake_path = join(self.output_file_path, 'ConvertJob', 'logs') fake_path = fake_path.replace(('qp-knight-lab-processing/' 'qp-knight-lab-processing'), 'qp-knight-lab-processing') + makedirs(fake_path, exist_ok=True) + + fake_path = join(fake_path, 'sbatch') + with open(fake_path, 'w') as f: f.write("echo 'Submitted batch job 9999999\n'") From 6dffa208d471c137baaa5743ffec534bb8e36bec Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 19:12:05 -0700 Subject: [PATCH 12/35] debug CI. test works as intended locally --- qp_klp/tests/test_step.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 9a9f0d5b..8a9bbc16 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -5,6 +5,7 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- +import os from unittest import TestCase from qp_klp.Step import Step from sequence_processing_pipeline.Pipeline import Pipeline @@ -66,13 +67,14 @@ def test_convert_bcl_to_fastq(self): makedirs(fake_path, exist_ok=True) - fake_path = join(fake_path, 'sbatch') - - with open(fake_path, 'w') as f: + with open(join(fake_path, 'sbatch'), 'w') as f: f.write("echo 'Submitted batch job 9999999\n'") chmod(fake_path, 0o777) + print(os.listdir(fake_path)) + + fake_path = join(abspath('.'), 'sacct') with open(fake_path, 'w') as f: From 1117f5a3b92f04c1d0b53c4e2f30324e39e8fe5b Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 19:33:31 -0700 Subject: [PATCH 13/35] debugging CI --- .github/workflows/qiita-plugin-ci.yml | 1 + qp_klp/tests/test_step.py | 3 ++- 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/qiita-plugin-ci.yml b/.github/workflows/qiita-plugin-ci.yml index e1da2992..9a4ac2df 100644 --- a/.github/workflows/qiita-plugin-ci.yml +++ b/.github/workflows/qiita-plugin-ci.yml @@ -135,6 +135,7 @@ jobs: export QP_KLP_CONFIG_FP=`pwd`/configuration.json export PYTHONWARNINGS="ignore:Certificate for localhost has no \`subjectAltName\`" + cd qp-knight-lab-processing nosetests --with-doctest --with-coverage -v --cover-package=qp_klp - uses: codecov/codecov-action@v3 diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 8a9bbc16..a208e9b0 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -61,9 +61,11 @@ def test_convert_bcl_to_fastq(self): fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + ''' fake_path = fake_path.replace(('qp-knight-lab-processing/' 'qp-knight-lab-processing'), 'qp-knight-lab-processing') + ''' makedirs(fake_path, exist_ok=True) @@ -73,7 +75,6 @@ def test_convert_bcl_to_fastq(self): chmod(fake_path, 0o777) print(os.listdir(fake_path)) - fake_path = join(abspath('.'), 'sacct') From 65a04caedff38a9f78a0b810901d7a7244ec8c0d Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 19:47:35 -0700 Subject: [PATCH 14/35] ci debug --- .github/workflows/qiita-plugin-ci.yml | 2 -- qp_klp/tests/test_step.py | 8 ++++++++ 2 files changed, 8 insertions(+), 2 deletions(-) diff --git a/.github/workflows/qiita-plugin-ci.yml b/.github/workflows/qiita-plugin-ci.yml index 9a4ac2df..fdc71aa3 100644 --- a/.github/workflows/qiita-plugin-ci.yml +++ b/.github/workflows/qiita-plugin-ci.yml @@ -134,8 +134,6 @@ jobs: export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg export QP_KLP_CONFIG_FP=`pwd`/configuration.json export PYTHONWARNINGS="ignore:Certificate for localhost has no \`subjectAltName\`" - - cd qp-knight-lab-processing nosetests --with-doctest --with-coverage -v --cover-package=qp_klp - uses: codecov/codecov-action@v3 diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index a208e9b0..2c9dd12c 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -18,11 +18,18 @@ class BaseStepTests(TestCase): def setUp(self): package_root = abspath('./qp_klp') + print("ROOT: %s" % package_root) + self.path = partial(join, package_root, 'tests', 'data') + + print("SELF.PATH: %s" % self.path()) + self.good_config_file = join(package_root, 'configuration.json') self.good_run_id = '211021_A00000_0000_SAMPLE' self.good_sample_sheet_path = self.path('good-sample-sheet.csv') self.output_file_path = self.path('output_dir') + + print("OUTPUT PATH: %s" % self.output_file_path) self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) @@ -60,6 +67,7 @@ def test_convert_bcl_to_fastq(self): step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + print("OUTPUT PATH2: %s" % self.output_file_path) ''' fake_path = fake_path.replace(('qp-knight-lab-processing/' From 715716e9fe098afc49db1b41e765467f0443fb67 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 20:00:53 -0700 Subject: [PATCH 15/35] ci debug --- qp_klp/tests/test_step.py | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 2c9dd12c..42a5845e 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -78,7 +78,7 @@ def test_convert_bcl_to_fastq(self): makedirs(fake_path, exist_ok=True) with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("echo 'Submitted batch job 9999999\n'") + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") chmod(fake_path, 0o777) @@ -103,6 +103,10 @@ def test_convert_bcl_to_fastq(self): self.good_sample_sheet_path) def test_quality_control(self): + # sn_tid_map_by_project = {} + # step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, + # None) + # step._quality_control(self.config['qc'], self.good_sample_sheet_path) pass def test_generate_reports(self): From b6fde092bbbeaa3ea8086706b0a23d3ac22b0da7 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 20:14:34 -0700 Subject: [PATCH 16/35] ci debug --- qp_klp/tests/test_step.py | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 42a5845e..8719cda9 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -69,18 +69,12 @@ def test_convert_bcl_to_fastq(self): fake_path = join(self.output_file_path, 'ConvertJob', 'logs') print("OUTPUT PATH2: %s" % self.output_file_path) - ''' - fake_path = fake_path.replace(('qp-knight-lab-processing/' - 'qp-knight-lab-processing'), - 'qp-knight-lab-processing') - ''' - makedirs(fake_path, exist_ok=True) with open(join(fake_path, 'sbatch'), 'w') as f: f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(fake_path, 0o777) + chmod(join(fake_path, 'sbatch'), 0o777) print(os.listdir(fake_path)) From 7f7a6ef1d30fadc93061738258084420322bf177 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 21:35:13 -0700 Subject: [PATCH 17/35] Added test for base QCJob --- qp_klp/tests/test_step.py | 53 ++++++++++++++++++++++----------------- 1 file changed, 30 insertions(+), 23 deletions(-) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 8719cda9..e46593a8 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -5,7 +5,6 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -import os from unittest import TestCase from qp_klp.Step import Step from sequence_processing_pipeline.Pipeline import Pipeline @@ -18,18 +17,11 @@ class BaseStepTests(TestCase): def setUp(self): package_root = abspath('./qp_klp') - print("ROOT: %s" % package_root) - self.path = partial(join, package_root, 'tests', 'data') - - print("SELF.PATH: %s" % self.path()) - self.good_config_file = join(package_root, 'configuration.json') self.good_run_id = '211021_A00000_0000_SAMPLE' self.good_sample_sheet_path = self.path('good-sample-sheet.csv') self.output_file_path = self.path('output_dir') - - print("OUTPUT PATH: %s" % self.output_file_path) self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) @@ -67,41 +59,56 @@ def test_convert_bcl_to_fastq(self): step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) fake_path = join(self.output_file_path, 'ConvertJob', 'logs') - print("OUTPUT PATH2: %s" % self.output_file_path) - makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - print(os.listdir(fake_path)) - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) step._convert_bcl_to_fastq(self.config['bcl-convert'], self.good_sample_sheet_path) def test_quality_control(self): - # sn_tid_map_by_project = {} - # step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, - # None) - # step._quality_control(self.config['qc'], self.good_sample_sheet_path) - pass + fake_path = join(self.output_file_path, 'QCJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'CDPH-SAL_Salmonella_Typhi_MDL-147'], + 'Gerwick_6123': ['3A', '4A', '5B', '6A', '7A'], + 'NYU_BMS_Melanoma_13059': ['AP581451B02', 'EP256645B01', + 'EP112567B02', 'EP337425B01', + 'LP127890A01']} + for project in exp: + fake_path = join(self.output_file_path, 'ConvertJob', project) + makedirs(fake_path, exist_ok=True) + + for sample in exp[project]: + r1 = join(fake_path, f'{sample}_SXXX_L001_R1_001.fastq.gz') + r2 = join(fake_path, f'{sample}_SXXX_L001_R2_001.fastq.gz') + + for file_path in [r1, r2]: + with open(file_path, 'w') as f: + f.write("This is a file.") + + sn_tid_map_by_project = {} + step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) + step._quality_control(self.config['qc'], self.good_sample_sheet_path) def test_generate_reports(self): pass From 70301a6ec1b552fac92eb51316113a32d2fa8304 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 22:32:36 -0700 Subject: [PATCH 18/35] Added MetagenomicStep tests --- qp_klp/MetagenomicStep.py | 7 ++- qp_klp/klp.py | 8 +-- qp_klp/tests/test_metagenomic_step.py | 91 +++++++++++++++++++++++++++ qp_klp/tests/test_step.py | 33 +++++++++- 4 files changed, 131 insertions(+), 8 deletions(-) create mode 100644 qp_klp/tests/test_metagenomic_step.py diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index c803a366..ed539a7a 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -11,8 +11,8 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback=None): super().__init__(pipeline, master_qiita_job_id, - status_update_callback, - sn_tid_map_by_project) + sn_tid_map_by_project, + status_update_callback) # Note: FailedSamplesRecord is not used when processing amplicon as the # samples are processed as a single fastq file and hence that info @@ -23,7 +23,8 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl-convert'] - job = super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet) + job = super()._convert_bcl_to_fastq(config, + self.pipeline.sample_sheet.path) self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'ConvertJob') def quality_control(self): diff --git a/qp_klp/klp.py b/qp_klp/klp.py index f83eaa78..e497c1b8 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -166,12 +166,12 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): pipeline.get_project_info()) if pipeline.type == 'metagenomic': - step = MetagenomicStep(pipeline, job_id, status_line, - sn_tid_map_by_project) + step = MetagenomicStep(pipeline, job_id, sn_tid_map_by_project, + status_line) else: # pipeline.type == 'amplicon': - step = AmpliconStep(pipeline, job_id, status_line, - sn_tid_map_by_project) + step = AmpliconStep(pipeline, job_id, sn_tid_map_by_project, + status_line) step.convert_bcl_to_fastq() diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py new file mode 100644 index 00000000..ee1f7517 --- /dev/null +++ b/qp_klp/tests/test_metagenomic_step.py @@ -0,0 +1,91 @@ +# ----------------------------------------------------------------------------- +# Copyright (c) 2014--, The Qiita Development Team. +# +# Distributed under the terms of the BSD 3-clause License. +# +# The full license is in the file LICENSE, distributed with this software. +# ----------------------------------------------------------------------------- +from unittest import TestCase +from qp_klp.MetagenomicStep import MetagenomicStep +from sequence_processing_pipeline.Pipeline import Pipeline +from os.path import join, abspath +from functools import partial +from os import makedirs, chmod +import json +from shutil import rmtree + + +class MetagenomicStepTests(TestCase): + def setUp(self): + package_root = abspath('./qp_klp') + self.path = partial(join, package_root, 'tests', 'data') + self.good_config_file = join(package_root, 'configuration.json') + self.good_run_id = '211021_A00000_0000_SAMPLE' + self.good_sample_sheet_path = self.path('good-sample-sheet.csv') + self.output_file_path = self.path('output_dir') + self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + makedirs(self.output_file_path, exist_ok=True) + + self.pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.good_sample_sheet_path, None, + self.output_file_path, self.qiita_id, + 'metagenomic', None) + + tmp = json.load(open(self.good_config_file, 'r'))['configuration'] + self.config = tmp + + def create_test_input(self): + fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + fake_path = join(abspath('.'), 'sacct') + with open(fake_path, 'w') as f: + f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" + "COMPLETED|09:53:41|0:0'") + chmod(fake_path, 0o777) + + fake_path = join(abspath('.'), 'sbatch') + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999998\n'") + chmod(fake_path, 0o777) + + def delete_test_output(self): + rmtree(self.output_file_path) + + def test_creation(self): + # Test base-class creation method, even though base-class will never + # be instantiated by itself in normal usage. + self.delete_test_output() + + # TODO: Note we don't do much with this variable yet. + sn_tid_map_by_project = {} + + with self.assertRaisesRegex(ValueError, "A pipeline object is needed" + " to initialize Step"): + MetagenomicStep(None, self.qiita_id, sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " + "initialize Step"): + MetagenomicStep(self.pipeline, None, sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " + "needed to initialize Step"): + MetagenomicStep(self.pipeline, self.qiita_id, None, None) + + step = MetagenomicStep(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) + + self.assertIsNotNone(step) + + def test_convert_bcl_to_fastq(self): + self.delete_test_output() + self.create_test_input() + + sn_tid_map_by_project = {} + step = MetagenomicStep(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) + + step.convert_bcl_to_fastq() diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index e46593a8..ff7085c9 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -12,6 +12,7 @@ from functools import partial from os import makedirs, chmod import json +from shutil import rmtree class BaseStepTests(TestCase): @@ -33,9 +34,31 @@ def setUp(self): tmp = json.load(open(self.good_config_file, 'r'))['configuration'] self.config = tmp + def create_test_input(self): + fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + fake_path = join(abspath('.'), 'sacct') + with open(fake_path, 'w') as f: + f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" + "COMPLETED|09:53:41|0:0'") + chmod(fake_path, 0o777) + + fake_path = join(abspath('.'), 'sbatch') + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999998\n'") + chmod(fake_path, 0o777) + + def delete_test_output(self): + rmtree(self.output_file_path) + def test_creation(self): # Test base-class creation method, even though base-class will never # be instantiated by itself in normal usage. + self.delete_test_output() # TODO: Note we don't do much with this variable yet. sn_tid_map_by_project = {} @@ -52,9 +75,14 @@ def test_creation(self): "needed to initialize Step"): Step(self.pipeline, self.qiita_id, None, None) - Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) + step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) + + self.assertIsNotNone(step) def test_convert_bcl_to_fastq(self): + self.delete_test_output() + self.create_test_input() + sn_tid_map_by_project = {} step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) @@ -79,6 +107,9 @@ def test_convert_bcl_to_fastq(self): self.good_sample_sheet_path) def test_quality_control(self): + self.delete_test_output() + self.create_test_input() + fake_path = join(self.output_file_path, 'QCJob', 'logs') makedirs(fake_path, exist_ok=True) with open(join(fake_path, 'sbatch'), 'w') as f: From b889ec339016ef927ab106d97f5a970f8d587fd9 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 23:04:38 -0700 Subject: [PATCH 19/35] Updated testing infrastructure --- qp_klp/MetagenomicStep.py | 5 +- qp_klp/tests/test_metagenomic_step.py | 82 ++++++++++++++++++++------- qp_klp/tests/test_step.py | 72 ++++++++++++++++------- 3 files changed, 115 insertions(+), 44 deletions(-) diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index ed539a7a..64e246d6 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -29,12 +29,13 @@ def convert_bcl_to_fastq(self): def quality_control(self): config = self.pipeline.configuration['qc'] - job = super()._quality_control(config, self.pipeline.sample_sheet) + job = super()._quality_control(config, self.pipeline.sample_sheet.path) self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'QCJob') def generate_reports(self): config = self.pipeline.configuration['fastqc'] - job = super()._generate_reports(config, self.pipeline.sample_sheet) + job = super()._generate_reports(config, + self.pipeline.sample_sheet.path) self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'FastQCJob') self.project_names = job.project_names diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py index ee1f7517..1610bc9b 100644 --- a/qp_klp/tests/test_metagenomic_step.py +++ b/qp_klp/tests/test_metagenomic_step.py @@ -34,31 +34,61 @@ def setUp(self): tmp = json.load(open(self.good_config_file, 'r'))['configuration'] self.config = tmp - def create_test_input(self): - fake_path = join(self.output_file_path, 'ConvertJob', 'logs') - makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: - f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" + def _create_test_input(self, stage): + if stage >= 1: + fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + fake_path = join(abspath('.'), 'sacct') + with open(fake_path, 'w') as f: + f.write( + "echo '9999999|99999999-9999-9999-9999-999999999999.txt|" "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) - - fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: - f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) - - def delete_test_output(self): + chmod(fake_path, 0o777) + + fake_path = join(abspath('.'), 'sbatch') + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999998\n'") + chmod(fake_path, 0o777) + + if stage >= 2: + fake_path = join(self.output_file_path, 'QCJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'CDPH-SAL_Salmonella_Typhi_MDL-147'], + 'Gerwick_6123': ['3A', '4A', '5B', '6A', '7A'], + 'NYU_BMS_Melanoma_13059': ['AP581451B02', 'EP256645B01', + 'EP112567B02', 'EP337425B01', + 'LP127890A01']} + for project in exp: + fake_path = join(self.output_file_path, 'ConvertJob', project) + makedirs(fake_path, exist_ok=True) + + for sample in exp[project]: + r1 = join(fake_path, f'{sample}_SXXX_L001_R1_001.fastq.gz') + r2 = join(fake_path, f'{sample}_SXXX_L001_R2_001.fastq.gz') + + for file_path in [r1, r2]: + with open(file_path, 'w') as f: + f.write("This is a file.") + + def _delete_test_output(self): rmtree(self.output_file_path) def test_creation(self): # Test base-class creation method, even though base-class will never # be instantiated by itself in normal usage. - self.delete_test_output() + self._delete_test_output() # TODO: Note we don't do much with this variable yet. sn_tid_map_by_project = {} @@ -81,11 +111,21 @@ def test_creation(self): self.assertIsNotNone(step) def test_convert_bcl_to_fastq(self): - self.delete_test_output() - self.create_test_input() + self._delete_test_output() + self._create_test_input(1) sn_tid_map_by_project = {} step = MetagenomicStep(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) step.convert_bcl_to_fastq() + + def test_quality_control(self): + self._delete_test_output() + self._create_test_input(2) + + sn_tid_map_by_project = {} + + step = MetagenomicStep(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) + step.quality_control() diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index ff7085c9..5ff571c9 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -34,31 +34,61 @@ def setUp(self): tmp = json.load(open(self.good_config_file, 'r'))['configuration'] self.config = tmp - def create_test_input(self): - fake_path = join(self.output_file_path, 'ConvertJob', 'logs') - makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: - f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" + def _create_test_input(self, stage): + if stage >= 1: + fake_path = join(self.output_file_path, 'ConvertJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + fake_path = join(abspath('.'), 'sacct') + with open(fake_path, 'w') as f: + f.write( + "echo '9999999|99999999-9999-9999-9999-999999999999.txt|" "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) + chmod(fake_path, 0o777) - fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: - f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) + fake_path = join(abspath('.'), 'sbatch') + with open(fake_path, 'w') as f: + f.write("echo 'Submitted batch job 9999998\n'") + chmod(fake_path, 0o777) - def delete_test_output(self): + if stage >= 2: + fake_path = join(self.output_file_path, 'QCJob', 'logs') + makedirs(fake_path, exist_ok=True) + with open(join(fake_path, 'sbatch'), 'w') as f: + f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") + chmod(join(fake_path, 'sbatch'), 0o777) + + exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', + 'CDPH-SAL_Salmonella_Typhi_MDL-144', + 'CDPH-SAL_Salmonella_Typhi_MDL-145', + 'CDPH-SAL_Salmonella_Typhi_MDL-146', + 'CDPH-SAL_Salmonella_Typhi_MDL-147'], + 'Gerwick_6123': ['3A', '4A', '5B', '6A', '7A'], + 'NYU_BMS_Melanoma_13059': ['AP581451B02', 'EP256645B01', + 'EP112567B02', 'EP337425B01', + 'LP127890A01']} + for project in exp: + fake_path = join(self.output_file_path, 'ConvertJob', project) + makedirs(fake_path, exist_ok=True) + + for sample in exp[project]: + r1 = join(fake_path, f'{sample}_SXXX_L001_R1_001.fastq.gz') + r2 = join(fake_path, f'{sample}_SXXX_L001_R2_001.fastq.gz') + + for file_path in [r1, r2]: + with open(file_path, 'w') as f: + f.write("This is a file.") + + def _delete_test_output(self): rmtree(self.output_file_path) def test_creation(self): # Test base-class creation method, even though base-class will never # be instantiated by itself in normal usage. - self.delete_test_output() + self._delete_test_output() # TODO: Note we don't do much with this variable yet. sn_tid_map_by_project = {} @@ -80,8 +110,8 @@ def test_creation(self): self.assertIsNotNone(step) def test_convert_bcl_to_fastq(self): - self.delete_test_output() - self.create_test_input() + self._delete_test_output() + self._create_test_input(1) sn_tid_map_by_project = {} step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) @@ -107,8 +137,8 @@ def test_convert_bcl_to_fastq(self): self.good_sample_sheet_path) def test_quality_control(self): - self.delete_test_output() - self.create_test_input() + self._delete_test_output() + self._create_test_input(2) fake_path = join(self.output_file_path, 'QCJob', 'logs') makedirs(fake_path, exist_ok=True) From fe186de0407fdebc8809db6a1aea71f51a416739 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Tue, 16 May 2023 23:55:38 -0700 Subject: [PATCH 20/35] Added AmpliconStep tests --- qp_klp/AmpliconStep.py | 4 ++ qp_klp/MetagenomicStep.py | 4 ++ qp_klp/tests/test_amplicon_step.py | 66 ++++++++++++++++++++++++++++++ 3 files changed, 74 insertions(+) create mode 100644 qp_klp/tests/test_amplicon_step.py diff --git a/qp_klp/AmpliconStep.py b/qp_klp/AmpliconStep.py index 595f562d..90065766 100644 --- a/qp_klp/AmpliconStep.py +++ b/qp_klp/AmpliconStep.py @@ -12,6 +12,10 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) + if pipeline.type != 'amplicon': + raise ValueError("Cannot instantiate AmpliconStep object from " + f"pipeline of type '{pipeline.type}'") + def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl2fastq'] # note that pipeline.sample_sheet in this case diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index 64e246d6..b24ce7f3 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -14,6 +14,10 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) + if pipeline.type != 'metagenomic': + raise ValueError("Cannot instantiate MetagenomicStep object from " + f"pipeline of type '{pipeline.type}'") + # Note: FailedSamplesRecord is not used when processing amplicon as the # samples are processed as a single fastq file and hence that info # is not available. diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py new file mode 100644 index 00000000..584b4708 --- /dev/null +++ b/qp_klp/tests/test_amplicon_step.py @@ -0,0 +1,66 @@ +# ----------------------------------------------------------------------------- +# Copyright (c) 2014--, The Qiita Development Team. +# +# Distributed under the terms of the BSD 3-clause License. +# +# The full license is in the file LICENSE, distributed with this software. +# ----------------------------------------------------------------------------- +from unittest import TestCase +from qp_klp.AmpliconStep import AmpliconStep +from sequence_processing_pipeline.Pipeline import Pipeline +from os.path import join, abspath +from functools import partial +from os import makedirs, chmod +import json +from shutil import rmtree + + +class AmpliconStepTests(TestCase): + def setUp(self): + package_root = abspath('./qp_klp') + self.path = partial(join, package_root, 'tests', 'data') + self.good_config_file = join(package_root, 'configuration.json') + self.good_run_id = '211021_A00000_0000_SAMPLE' + self.good_sample_sheet_path = self.path('good-sample-sheet.csv') + self.output_file_path = self.path('output_dir') + self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' + makedirs(self.output_file_path, exist_ok=True) + + tmp = json.load(open(self.good_config_file, 'r'))['configuration'] + self.config = tmp + + def test_creation(self): + # Test base-class creation method, even though base-class will never + # be instantiated by itself in normal usage. + + # dummy used for constructor testing. + sn_tid_map_by_project = {} + + # create metagenomic pipeline for failure tests. + metagenomic_pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_sample_sheet_path, + None, + self.output_file_path, + self.qiita_id, + 'metagenomic', + None) + + with self.assertRaisesRegex(ValueError, "A pipeline object is needed" + " to initialize Step"): + AmpliconStep(None, self.qiita_id, sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " + "initialize Step"): + AmpliconStep(metagenomic_pipeline, None, + sn_tid_map_by_project, None) + + with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " + "needed to initialize Step"): + AmpliconStep(metagenomic_pipeline, self.qiita_id, None, None) + + with self.assertRaisesRegex(ValueError, "Cannot instantiate Amplicon" + "Step object from pipeline of" + " type 'metagenomic'"): + AmpliconStep(metagenomic_pipeline, self.qiita_id, + sn_tid_map_by_project, None) From 3df5f25c44c7c70491fbf60f88b028b5813f656b Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Wed, 17 May 2023 00:03:41 -0700 Subject: [PATCH 21/35] flake8 --- qp_klp/tests/test_amplicon_step.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py index 584b4708..bc6ae8bc 100644 --- a/qp_klp/tests/test_amplicon_step.py +++ b/qp_klp/tests/test_amplicon_step.py @@ -10,9 +10,8 @@ from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath from functools import partial -from os import makedirs, chmod +from os import makedirs import json -from shutil import rmtree class AmpliconStepTests(TestCase): From 547d3d124c2c27d023cc08246fd7b3dd03806e79 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Wed, 17 May 2023 18:30:38 -0700 Subject: [PATCH 22/35] setup now points to merged mg-scripts. --- setup.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/setup.py b/setup.py index 6b628432..338d4805 100644 --- a/setup.py +++ b/setup.py @@ -51,7 +51,6 @@ 'qiita_client @ https://github.com/' 'qiita-spots/qiita_client/archive/master.zip', 'sequence-processing-pipeline @ https://github.com/' - 'charles-cowart/mg-scripts/archive/' - 'support_plugin_refactoring.zip'], + 'biocore/mg-scripts/archive/master.zip'], dependency_links=[], classifiers=classifiers) From b2e48a68849f71472378c2ac87415fd87c155dd9 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Wed, 17 May 2023 22:46:29 -0700 Subject: [PATCH 23/35] Updated code to create fake files in a searchable path. --- qp_klp/AmpliconStep.py | 4 +- qp_klp/MetagenomicStep.py | 6 +-- qp_klp/Step.py | 4 +- qp_klp/klp.py | 6 +-- qp_klp/tests/test_step.py | 83 ++++++++++++++++++++++----------------- 5 files changed, 58 insertions(+), 45 deletions(-) diff --git a/qp_klp/AmpliconStep.py b/qp_klp/AmpliconStep.py index 90065766..e269fd2d 100644 --- a/qp_klp/AmpliconStep.py +++ b/qp_klp/AmpliconStep.py @@ -12,9 +12,9 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) - if pipeline.type != 'amplicon': + if pipeline.pipeline_type != 'amplicon': raise ValueError("Cannot instantiate AmpliconStep object from " - f"pipeline of type '{pipeline.type}'") + f"pipeline of type '{pipeline.pipeline_type}'") def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl2fastq'] diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/MetagenomicStep.py index b24ce7f3..eda61eee 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/MetagenomicStep.py @@ -14,9 +14,9 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) - if pipeline.type != 'metagenomic': + if pipeline.pipeline_type != 'metagenomic': raise ValueError("Cannot instantiate MetagenomicStep object from " - f"pipeline of type '{pipeline.type}'") + f"pipeline of type '{pipeline.pipeline_type}'") # Note: FailedSamplesRecord is not used when processing amplicon as the # samples are processed as a single fastq file and hence that info @@ -101,7 +101,7 @@ def generate_commands(self, special_map, server_url, # review upon completion. touched_studies.append((qiita_id, project)) - if self.pipeline.type == 'metagenomic': + if self.pipeline.pipeline_type == 'metagenomic': self.cmds.append(f'cd {out_dir}; tar zcvf reports-QCJob.tgz ' f'QCJob/{project}/fastp_reports_dir') diff --git a/qp_klp/Step.py b/qp_klp/Step.py index 6df7faa3..ee75a037 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -106,7 +106,7 @@ def _generate_reports(self, config, input_file_path): self.job_pool_size, config['multiqc_config_file_path'], config['job_max_array_length'], - self.pipeline.type == 'amplicon') + self.pipeline.pipeline_type == 'amplicon') fastqc_job.run(callback=self.update_callback) @@ -114,7 +114,7 @@ def _generate_reports(self, config, input_file_path): def _generate_prep_file(self, config, input_file_path, seqpro_path, project_names): - is_amplicon = self.pipeline.type == 'amplicon' + is_amplicon = self.pipeline.pipeline_type == 'amplicon' gpf_job = GenPrepFileJob( self.pipeline.run_dir, diff --git a/qp_klp/klp.py b/qp_klp/klp.py index e497c1b8..3f53180f 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -165,11 +165,11 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): qclient.get("/qiita_db/artifacts/types/"), pipeline.get_project_info()) - if pipeline.type == 'metagenomic': + if pipeline.pipeline_type == 'metagenomic': step = MetagenomicStep(pipeline, job_id, sn_tid_map_by_project, status_line) else: - # pipeline.type == 'amplicon': + # pipeline.pipeline_type == 'amplicon': step = AmpliconStep(pipeline, job_id, sn_tid_map_by_project, status_line) @@ -203,7 +203,7 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): data = {'prep_info': dumps(metadata), 'study': study_id, # THIS MIGHT NEED CONVERSION FROM AMPLICON TO 16S - 'data_type': step.pipeline.type} + 'data_type': step.pipeline.pipeline_type} reply = qclient.post('/qiita_db/prep_template/', data=data) prep_id = reply['prep'] diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 5ff571c9..bb26f53b 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -13,6 +13,7 @@ from os import makedirs, chmod import json from shutil import rmtree +from os import environ, remove class BaseStepTests(TestCase): @@ -34,32 +35,59 @@ def setUp(self): tmp = json.load(open(self.good_config_file, 'r'))['configuration'] self.config = tmp + self.fake_bin_path = self._get_searchable_path() + + self.delete_these = [] + + def _is_writable(self, a_path): + try: + tmp = join(a_path, 'qpklp_temp_file') + with open(tmp, 'w') as f: + f.write('this is a test\n') + remove(tmp) + return True + except IOError: + return False + + def _get_searchable_path(self): + searchable_paths = [] + + if 'CONDA_PREFIX' in environ: + # create fake binaries in bin directory of Conda environment + searchable_paths.append(environ['CONDA_PREFIX'] + '/bin') + else: + # if CONDA_PREFIX doesn't exist, select a path from a list of + # searchable paths that contains 'env' and assume it's writable. + tmp = environ['PATH'] + searchable_paths += tmp.split(':') + + for a_path in searchable_paths: + if self._is_writable(a_path): + return a_path + + def _create_fake_bin(self, name, content): + tmp = join(self.fake_bin_path, name) + with open(tmp, 'w') as f: + f.write(f"#!/bin/sh\n{content}\n") + chmod(tmp, 0o777) + self.delete_these.append(tmp) + return tmp + def _create_test_input(self, stage): if stage >= 1: fake_path = join(self.output_file_path, 'ConvertJob', 'logs') makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: - f.write( - "echo '9999999|99999999-9999-9999-9999-999999999999.txt|" - "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) - - fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: - f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) + + self._create_fake_bin('sbatch', "echo 'Submitted " + "batch job 9999999'") + + self._create_fake_bin('sacct', "echo '9999999|99999999-9999-9999" + "-9999-999999999999.txt|COMPLETED" + "|09:53:41|0:0'") if stage >= 2: fake_path = join(self.output_file_path, 'QCJob', 'logs') makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', 'CDPH-SAL_Salmonella_Typhi_MDL-144', @@ -84,6 +112,8 @@ def _create_test_input(self, stage): def _delete_test_output(self): rmtree(self.output_file_path) + for fake_bin in self.delete_these: + remove(fake_bin) def test_creation(self): # Test base-class creation method, even though base-class will never @@ -118,20 +148,6 @@ def test_convert_bcl_to_fastq(self): fake_path = join(self.output_file_path, 'ConvertJob', 'logs') makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: - f.write("echo '9999999|99999999-9999-9999-9999-999999999999.txt|" - "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) - - fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: - f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) step._convert_bcl_to_fastq(self.config['bcl-convert'], self.good_sample_sheet_path) @@ -142,9 +158,6 @@ def test_quality_control(self): fake_path = join(self.output_file_path, 'QCJob', 'logs') makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', 'CDPH-SAL_Salmonella_Typhi_MDL-144', From 2f638b00f1eebe181099fff0a1b80902dfccd17c Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Wed, 17 May 2023 23:20:24 -0700 Subject: [PATCH 24/35] Bugfix --- qp_klp/tests/test_metagenomic_step.py | 73 ++------------------------- 1 file changed, 4 insertions(+), 69 deletions(-) diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py index 1610bc9b..bcd612b0 100644 --- a/qp_klp/tests/test_metagenomic_step.py +++ b/qp_klp/tests/test_metagenomic_step.py @@ -5,7 +5,8 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -from unittest import TestCase +#from unittest import TestCase +from qp_klp.tests.test_step import BaseStepTests from qp_klp.MetagenomicStep import MetagenomicStep from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath @@ -15,75 +16,9 @@ from shutil import rmtree -class MetagenomicStepTests(TestCase): +class MetagenomicStepTests(BaseStepTests): def setUp(self): - package_root = abspath('./qp_klp') - self.path = partial(join, package_root, 'tests', 'data') - self.good_config_file = join(package_root, 'configuration.json') - self.good_run_id = '211021_A00000_0000_SAMPLE' - self.good_sample_sheet_path = self.path('good-sample-sheet.csv') - self.output_file_path = self.path('output_dir') - self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' - makedirs(self.output_file_path, exist_ok=True) - - self.pipeline = Pipeline(self.good_config_file, self.good_run_id, - self.good_sample_sheet_path, None, - self.output_file_path, self.qiita_id, - 'metagenomic', None) - - tmp = json.load(open(self.good_config_file, 'r'))['configuration'] - self.config = tmp - - def _create_test_input(self, stage): - if stage >= 1: - fake_path = join(self.output_file_path, 'ConvertJob', 'logs') - makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - fake_path = join(abspath('.'), 'sacct') - with open(fake_path, 'w') as f: - f.write( - "echo '9999999|99999999-9999-9999-9999-999999999999.txt|" - "COMPLETED|09:53:41|0:0'") - chmod(fake_path, 0o777) - - fake_path = join(abspath('.'), 'sbatch') - with open(fake_path, 'w') as f: - f.write("echo 'Submitted batch job 9999998\n'") - chmod(fake_path, 0o777) - - if stage >= 2: - fake_path = join(self.output_file_path, 'QCJob', 'logs') - makedirs(fake_path, exist_ok=True) - with open(join(fake_path, 'sbatch'), 'w') as f: - f.write("#!/bin/sh\necho 'Submitted batch job 9999999'\n") - chmod(join(fake_path, 'sbatch'), 0o777) - - exp = {'Feist_11661': ['CDPH-SAL_Salmonella_Typhi_MDL-143', - 'CDPH-SAL_Salmonella_Typhi_MDL-144', - 'CDPH-SAL_Salmonella_Typhi_MDL-145', - 'CDPH-SAL_Salmonella_Typhi_MDL-146', - 'CDPH-SAL_Salmonella_Typhi_MDL-147'], - 'Gerwick_6123': ['3A', '4A', '5B', '6A', '7A'], - 'NYU_BMS_Melanoma_13059': ['AP581451B02', 'EP256645B01', - 'EP112567B02', 'EP337425B01', - 'LP127890A01']} - for project in exp: - fake_path = join(self.output_file_path, 'ConvertJob', project) - makedirs(fake_path, exist_ok=True) - - for sample in exp[project]: - r1 = join(fake_path, f'{sample}_SXXX_L001_R1_001.fastq.gz') - r2 = join(fake_path, f'{sample}_SXXX_L001_R2_001.fastq.gz') - - for file_path in [r1, r2]: - with open(file_path, 'w') as f: - f.write("This is a file.") - - def _delete_test_output(self): - rmtree(self.output_file_path) + super().setUp() def test_creation(self): # Test base-class creation method, even though base-class will never From 3e788ec1d218e83250402bd4bc195df870d639cd Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Wed, 17 May 2023 23:30:49 -0700 Subject: [PATCH 25/35] flake8 --- qp_klp/tests/test_metagenomic_step.py | 7 ------- 1 file changed, 7 deletions(-) diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py index bcd612b0..f76c4c11 100644 --- a/qp_klp/tests/test_metagenomic_step.py +++ b/qp_klp/tests/test_metagenomic_step.py @@ -5,15 +5,8 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -#from unittest import TestCase from qp_klp.tests.test_step import BaseStepTests from qp_klp.MetagenomicStep import MetagenomicStep -from sequence_processing_pipeline.Pipeline import Pipeline -from os.path import join, abspath -from functools import partial -from os import makedirs, chmod -import json -from shutil import rmtree class MetagenomicStepTests(BaseStepTests): From 57847522c2c537115be6a2bd254c79679fcb348e Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Thu, 18 May 2023 12:20:25 -0700 Subject: [PATCH 26/35] Easy updates based on feedback --- qp_klp/{AmpliconStep.py => Amplicon.py} | 13 +++-- qp_klp/{MetagenomicStep.py => Metagenomic.py} | 9 +++- qp_klp/klp.py | 12 ++--- .../211021_A00000_0000_SAMPLE/RunInfo.xml | 17 ++++++- qp_klp/tests/data/good-mapping-file.txt | 25 +++++++++ qp_klp/tests/test_amplicon_step.py | 51 +++++++++++-------- qp_klp/tests/test_metagenomic_step.py | 22 ++++---- 7 files changed, 105 insertions(+), 44 deletions(-) rename qp_klp/{AmpliconStep.py => Amplicon.py} (87%) rename qp_klp/{MetagenomicStep.py => Metagenomic.py} (93%) create mode 100644 qp_klp/tests/data/good-mapping-file.txt diff --git a/qp_klp/AmpliconStep.py b/qp_klp/Amplicon.py similarity index 87% rename from qp_klp/AmpliconStep.py rename to qp_klp/Amplicon.py index e269fd2d..07e03f7d 100644 --- a/qp_klp/AmpliconStep.py +++ b/qp_klp/Amplicon.py @@ -4,7 +4,7 @@ from qp_klp.Step import Step -class AmpliconStep(Step): +class Amplicon(Step): def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback=None): super().__init__(pipeline, @@ -13,13 +13,18 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback) if pipeline.pipeline_type != 'amplicon': - raise ValueError("Cannot instantiate AmpliconStep object from " + raise ValueError("Cannot instantiate Amplicon object from " f"pipeline of type '{pipeline.pipeline_type}'") def convert_bcl_to_fastq(self): + # The 'bcl2fastq' key is a convention hard-coded into mg-scripts and + # qp-klp projects. By design and history, amplicon jobs use EMP primers + # and are demuxed downstream of qp-klp by Qiita. This necessitates the + # use of bcl2fastq and a 'dummy' sample-sheet to avoid the + # demultiplexing that otherwise occurs at this stage. The name and + # path of the executable, the resource requirements to instantiate a + # SLURM job with, etc. are stored in configuration['bcl2fastq']. config = self.pipeline.configuration['bcl2fastq'] - # note that pipeline.sample_sheet in this case - # is the dummy sample-sheet created by Pipeline. super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet) def quality_control(self): diff --git a/qp_klp/MetagenomicStep.py b/qp_klp/Metagenomic.py similarity index 93% rename from qp_klp/MetagenomicStep.py rename to qp_klp/Metagenomic.py index eda61eee..1088fd37 100644 --- a/qp_klp/MetagenomicStep.py +++ b/qp_klp/Metagenomic.py @@ -6,7 +6,7 @@ from qp_klp.Step import Step -class MetagenomicStep(Step): +class Metagenomic(Step): def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback=None): super().__init__(pipeline, @@ -15,7 +15,7 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback) if pipeline.pipeline_type != 'metagenomic': - raise ValueError("Cannot instantiate MetagenomicStep object from " + raise ValueError("Cannot instantiate Metagenomic object from " f"pipeline of type '{pipeline.pipeline_type}'") # Note: FailedSamplesRecord is not used when processing amplicon as the @@ -26,6 +26,11 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, self.project_names = None def convert_bcl_to_fastq(self): + # The 'bcl-convert' key is a convention hard-coded into mg-scripts and + # qp-klp projects. Currently metagenomic jobs use bcl-convert for its + # improved performance over bcl2fastq. The name and path of the + # executable, the resource requirements to instantiate a SLURM job + # with, etc. are stored in configuration['bcl-convert'']. config = self.pipeline.configuration['bcl-convert'] job = super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet.path) diff --git a/qp_klp/klp.py b/qp_klp/klp.py index 3f53180f..f85d96a6 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -9,8 +9,8 @@ from os import environ from qiita_client import ArtifactInfo from random import sample as rsampl -from qp_klp.AmpliconStep import AmpliconStep -from qp_klp.MetagenomicStep import MetagenomicStep +from qp_klp.Amplicon import Amplicon +from qp_klp.Metagenomic import Metagenomic from qp_klp.klp_util import (generate_pipeline, generate_special_map, get_registered_samples_in_qiita, parse_prep_file, update_blanks_in_qiita, update_prep_templates, @@ -166,12 +166,12 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): pipeline.get_project_info()) if pipeline.pipeline_type == 'metagenomic': - step = MetagenomicStep(pipeline, job_id, sn_tid_map_by_project, - status_line) + step = Metagenomic(pipeline, job_id, sn_tid_map_by_project, + status_line) else: # pipeline.pipeline_type == 'amplicon': - step = AmpliconStep(pipeline, job_id, sn_tid_map_by_project, - status_line) + step = Amplicon(pipeline, job_id, sn_tid_map_by_project, + status_line) step.convert_bcl_to_fastq() diff --git a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml index 90bfcb51..38d63116 100644 --- a/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml +++ b/qp_klp/tests/data/211021_A00000_0000_SAMPLE/RunInfo.xml @@ -1 +1,16 @@ -this is a test + + + + 000000000-XXXXX + M09999 + 170523 + + + + + + + + + diff --git a/qp_klp/tests/data/good-mapping-file.txt b/qp_klp/tests/data/good-mapping-file.txt new file mode 100644 index 00000000..e7de1600 --- /dev/null +++ b/qp_klp/tests/data/good-mapping-file.txt @@ -0,0 +1,25 @@ +sample_name barcode center_name center_project_name experiment_design_description extraction_robot extractionkit_lot instrument_model library_construction_protocol linker mastermix_lot orig_name pcr_primers platform plating primer primer_date primer_plate processing_robot project_name qiita_prep_id run_center run_date run_prefix runid sample_plate sequencing_meth target_gene target_subfragment tm1000_8_tool tm300_8_tool tm50_8_tool water_lot well_description well_id +SKM7.640188 TATGCCAGAGAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.FH_C4 C4 +SKD9.640182 ATCTAGTGGCAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.LH_D4 D4 +SKM8.640201 TTCCTTAGTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.1.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.1.21.RK.RH_B4 B4 +SKB8.640193 GTGGAGTCTCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.FH_D1 D1 +SKD2.640178 TGATGTGCTAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.LH_E1 E1 +SKM3.640197 TGACTAATGGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.10.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.10.21.RK.RH_C1 C1 +SKM4.640180 GTAGTAGACCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.FH_E2 E2 +SKB9.640200 CCGGACAAGAAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.LH_F2 F2 +SKB4.640189 ACCTTACACCTT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.12.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.12.21.RK.RH_D2 D2 +SKB5.640181 CGCGCCTTAAAC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.FH_A5 A5 +SKB6.640176 CGTCCGTATGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.LH_B5 B5 +SKM2.640199 GACTCTGCTCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.13.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.13.21.RK.RH_H4 H4 +SKM5.640177 TCCATACCGGAA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.FH_A2 A2 +SKD8.640184 CGGGACACCCGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.17.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.17.21.RK.RH_C2 C2 +SKD4.640185 TGTGCACGCCAT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.FH_F1 F1 +SKB3.640195 CTATGTATTAGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.2.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.2.21.RK.LH_H1 H1 +SKB7.640196 TAAATATACCCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.FH_G2 G2 +SKD3.640198 ACTCCCGTGTGA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.LH_H2 H2 +SKD7.640191 CCTAACGGTCCA UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.3.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.3.21.RK.RH_A4 A4 +SKD6.640190 CTCGCCCTCGCC UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.FH_E4 E4 +SKB2.640194 TACTAACGCGGT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.LH_F4 F4 +SKM9.640192 GTCGTCCAAATG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.4.21.RK.RH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.4.21.RK.RH_G4 G4 +SKM6.640187 GTCATGCTCCAG UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.FH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.FH_H5 H5 +SKD5.640186 GCGATCACACCT UCSDMI Knight_ABTX Samples from ABTX NA NA Illumina MiSeq Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 GT 1331807 11.5.21.RK.LH FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT Illumina LNH GTGTGYCAGCMGCCGCGGTAA 122822 1 Echo 550 Feist_1 14339 UCSDMI 2/7/23 ABTX_Plates_238_239_240_242_S1_L001 230207_M05314_0346_000000000-KVMGL ABTX_20230208_1_Plate_238 Sequencing by synthesis 16S rRNA V4 108379Z NA NA 1317793 ABTX_20230208_1_Plate_238_11.5.21.RK.LH_F5 F5 diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py index bc6ae8bc..d4907036 100644 --- a/qp_klp/tests/test_amplicon_step.py +++ b/qp_klp/tests/test_amplicon_step.py @@ -6,7 +6,7 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- from unittest import TestCase -from qp_klp.AmpliconStep import AmpliconStep +from qp_klp.Amplicon import Amplicon from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath from functools import partial @@ -14,13 +14,14 @@ import json -class AmpliconStepTests(TestCase): +class AmpliconTests(TestCase): def setUp(self): package_root = abspath('./qp_klp') self.path = partial(join, package_root, 'tests', 'data') self.good_config_file = join(package_root, 'configuration.json') self.good_run_id = '211021_A00000_0000_SAMPLE' self.good_sample_sheet_path = self.path('good-sample-sheet.csv') + self.good_mapping_file = self.path('good-mapping-file.txt') self.output_file_path = self.path('output_dir') self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) @@ -35,31 +36,41 @@ def test_creation(self): # dummy used for constructor testing. sn_tid_map_by_project = {} - # create metagenomic pipeline for failure tests. - metagenomic_pipeline = Pipeline(self.good_config_file, - self.good_run_id, - self.good_sample_sheet_path, - None, - self.output_file_path, - self.qiita_id, - 'metagenomic', - None) - with self.assertRaisesRegex(ValueError, "A pipeline object is needed" " to initialize Step"): - AmpliconStep(None, self.qiita_id, sn_tid_map_by_project, None) + Amplicon(None, self.qiita_id, sn_tid_map_by_project, None) + + # create amplicon pipeline for failure tests. + amplicon_pipeline = Pipeline(self.good_config_file, + self.good_run_id, + None, + self.good_mapping_file, + self.output_file_path, + self.qiita_id, + 'amplicon', + None) with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " "initialize Step"): - AmpliconStep(metagenomic_pipeline, None, - sn_tid_map_by_project, None) + Amplicon(amplicon_pipeline, None, + sn_tid_map_by_project, None) with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " "needed to initialize Step"): - AmpliconStep(metagenomic_pipeline, self.qiita_id, None, None) + Amplicon(amplicon_pipeline, self.qiita_id, None, None) + + # create metagenomic pipeline for final test. + metagenomic_pipeline = Pipeline(self.good_config_file, + self.good_run_id, + self.good_sample_sheet_path, + None, + self.output_file_path, + self.qiita_id, + 'metagenomic', + None) - with self.assertRaisesRegex(ValueError, "Cannot instantiate Amplicon" - "Step object from pipeline of" + with self.assertRaisesRegex(ValueError, "Cannot instantiate Amplicon " + "object from pipeline of" " type 'metagenomic'"): - AmpliconStep(metagenomic_pipeline, self.qiita_id, - sn_tid_map_by_project, None) + Amplicon(metagenomic_pipeline, self.qiita_id, + sn_tid_map_by_project, None) diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py index f76c4c11..43f1b1bc 100644 --- a/qp_klp/tests/test_metagenomic_step.py +++ b/qp_klp/tests/test_metagenomic_step.py @@ -6,10 +6,10 @@ # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- from qp_klp.tests.test_step import BaseStepTests -from qp_klp.MetagenomicStep import MetagenomicStep +from qp_klp.Metagenomic import Metagenomic -class MetagenomicStepTests(BaseStepTests): +class MetagenomicTests(BaseStepTests): def setUp(self): super().setUp() @@ -23,18 +23,18 @@ def test_creation(self): with self.assertRaisesRegex(ValueError, "A pipeline object is needed" " to initialize Step"): - MetagenomicStep(None, self.qiita_id, sn_tid_map_by_project, None) + Metagenomic(None, self.qiita_id, sn_tid_map_by_project, None) with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " "initialize Step"): - MetagenomicStep(self.pipeline, None, sn_tid_map_by_project, None) + Metagenomic(self.pipeline, None, sn_tid_map_by_project, None) with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " "needed to initialize Step"): - MetagenomicStep(self.pipeline, self.qiita_id, None, None) + Metagenomic(self.pipeline, self.qiita_id, None, None) - step = MetagenomicStep(self.pipeline, self.qiita_id, - sn_tid_map_by_project, None) + step = Metagenomic(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) self.assertIsNotNone(step) @@ -43,8 +43,8 @@ def test_convert_bcl_to_fastq(self): self._create_test_input(1) sn_tid_map_by_project = {} - step = MetagenomicStep(self.pipeline, self.qiita_id, - sn_tid_map_by_project, None) + step = Metagenomic(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) step.convert_bcl_to_fastq() @@ -54,6 +54,6 @@ def test_quality_control(self): sn_tid_map_by_project = {} - step = MetagenomicStep(self.pipeline, self.qiita_id, - sn_tid_map_by_project, None) + step = Metagenomic(self.pipeline, self.qiita_id, + sn_tid_map_by_project, None) step.quality_control() From 1c8f792422f62f9a3061f074530ff5e52c890909 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Fri, 19 May 2023 17:06:35 -0700 Subject: [PATCH 27/35] Removed configuration.json Removed configuration.json. Additional updates based on testing and feedback. --- .gitignore | 4 ++ qp_klp/Amplicon.py | 10 ++-- qp_klp/Metagenomic.py | 4 +- qp_klp/Step.py | 3 +- qp_klp/configuration.json | 60 ----------------------- qp_klp/tests/test_amplicon_step.py | 36 +++++--------- qp_klp/tests/test_step.py | 78 +++++++++++++++++++++++++++--- 7 files changed, 93 insertions(+), 102 deletions(-) delete mode 100644 qp_klp/configuration.json diff --git a/.gitignore b/.gitignore index b6e47617..79a2ee63 100644 --- a/.gitignore +++ b/.gitignore @@ -127,3 +127,7 @@ dmypy.json # Pyre type checker .pyre/ + + +# Plugin configuration file +configuration.json diff --git a/qp_klp/Amplicon.py b/qp_klp/Amplicon.py index 07e03f7d..58ccf466 100644 --- a/qp_klp/Amplicon.py +++ b/qp_klp/Amplicon.py @@ -13,8 +13,8 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback) if pipeline.pipeline_type != 'amplicon': - raise ValueError("Cannot instantiate Amplicon object from " - f"pipeline of type '{pipeline.pipeline_type}'") + raise ValueError("Cannot create an Amplicon run using a " + f"{pipeline.pipeline_type}-configured Pipeline.") def convert_bcl_to_fastq(self): # The 'bcl2fastq' key is a convention hard-coded into mg-scripts and @@ -82,10 +82,8 @@ def quality_control(self): new_path = join(faked_output_folder, basename(raw_fastq_file)) copyfile(raw_fastq_file, new_path) - def generate_reports(self, config, input_file_path): - config = self.pipeline.configuration['fastqc'] - super()._generate_reports(config, self.pipeline.mapping_file) - + def generate_reports(self, input_file_path): + super()._generate_reports(self.pipeline.mapping_file) return None # amplicon doesn't need project names def generate_prep_file(self): diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index 1088fd37..5bfbf58e 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -42,9 +42,7 @@ def quality_control(self): self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'QCJob') def generate_reports(self): - config = self.pipeline.configuration['fastqc'] - job = super()._generate_reports(config, - self.pipeline.sample_sheet.path) + job = super()._generate_reports(self.pipeline.sample_sheet.path) self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'FastQCJob') self.project_names = job.project_names diff --git a/qp_klp/Step.py b/qp_klp/Step.py index ee75a037..b141ab0b 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -89,7 +89,8 @@ def _quality_control(self, config, input_file_path): return qc_job - def _generate_reports(self, config, input_file_path): + def _generate_reports(self, input_file_path): + config = self.pipeline.configuration['fastqc'] fastqc_job = FastQCJob(self.pipeline.run_dir, self.pipeline.output_path, join(self.pipeline.output_path, 'ConvertJob'), diff --git a/qp_klp/configuration.json b/qp_klp/configuration.json deleted file mode 100644 index 99f623a4..00000000 --- a/qp_klp/configuration.json +++ /dev/null @@ -1,60 +0,0 @@ -{ - "configuration": { - "pipeline": { - "archive_path": "sequence_processing_pipeline/tests/data/sequencing/knight_lab_completed_runs", - "search_paths": [ "/tmp", "qp_klp/tests/data"], - "amplicon_search_paths": [ "/tmp", "qp_klp/tests/data"] - }, - "bcl2fastq": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bcl2fastq_2.20.0.422"], - "executable_path": "bcl2fastq", - "per_process_memory_limit": "10gb" - }, - "bcl-convert": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 36, - "modules_to_load": ["bclconvert_3.7.5"], - "executable_path": "bcl-convert", - "per_process_memory_limit": "10gb" - }, - "qc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "wallclock_time_in_hours": 1, - "minimap_databases": ["/databases/minimap2/human-phix-db.mmi"], - "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", - "modules_to_load": ["fastp_0.20.1", "samtools_1.12", " minimap2_2.18"], - "fastp_executable_path": "fastp", - "minimap2_executable_path": "minimap2", - "samtools_executable_path": "samtools", - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - }, - "seqpro": { - "seqpro_path": "seqpro", - "modules_to_load": [] - }, - "fastqc": { - "nodes": 1, - "nprocs": 16, - "queue": "qiita", - "nthreads": 16, - "wallclock_time_in_hours": 1, - "modules_to_load": ["fastqc_0.11.5"], - "fastqc_executable_path": "fastqc", - "multiqc_executable_path": "multiqc", - "multiqc_config_file_path": "sequence_processing_pipeline/multiqc-bclconvert-config.yaml", - "job_total_memory_limit": "20gb", - "job_pool_size": 30, - "job_max_array_length": 1000 - } - } -} diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py index d4907036..03d6ec9f 100644 --- a/qp_klp/tests/test_amplicon_step.py +++ b/qp_klp/tests/test_amplicon_step.py @@ -5,29 +5,17 @@ # # The full license is in the file LICENSE, distributed with this software. # ----------------------------------------------------------------------------- -from unittest import TestCase from qp_klp.Amplicon import Amplicon from sequence_processing_pipeline.Pipeline import Pipeline from os.path import join, abspath -from functools import partial -from os import makedirs -import json +from qp_klp.tests.test_step import BaseStepTests -class AmpliconTests(TestCase): +class AmpliconTests(BaseStepTests): def setUp(self): - package_root = abspath('./qp_klp') - self.path = partial(join, package_root, 'tests', 'data') - self.good_config_file = join(package_root, 'configuration.json') - self.good_run_id = '211021_A00000_0000_SAMPLE' - self.good_sample_sheet_path = self.path('good-sample-sheet.csv') - self.good_mapping_file = self.path('good-mapping-file.txt') - self.output_file_path = self.path('output_dir') - self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' - makedirs(self.output_file_path, exist_ok=True) - - tmp = json.load(open(self.good_config_file, 'r'))['configuration'] - self.config = tmp + super().setUp() + self.good_mapping_file = join(abspath('./qp_klp'), 'tests', 'data', + 'good-mapping-file.txt') def test_creation(self): # Test base-class creation method, even though base-class will never @@ -41,14 +29,14 @@ def test_creation(self): Amplicon(None, self.qiita_id, sn_tid_map_by_project, None) # create amplicon pipeline for failure tests. - amplicon_pipeline = Pipeline(self.good_config_file, + amplicon_pipeline = Pipeline(None, self.good_run_id, None, self.good_mapping_file, self.output_file_path, self.qiita_id, 'amplicon', - None) + AmpliconTests.CONFIGURATION) with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " "initialize Step"): @@ -60,17 +48,17 @@ def test_creation(self): Amplicon(amplicon_pipeline, self.qiita_id, None, None) # create metagenomic pipeline for final test. - metagenomic_pipeline = Pipeline(self.good_config_file, + metagenomic_pipeline = Pipeline(None, self.good_run_id, self.good_sample_sheet_path, None, self.output_file_path, self.qiita_id, 'metagenomic', - None) + AmpliconTests.CONFIGURATION) - with self.assertRaisesRegex(ValueError, "Cannot instantiate Amplicon " - "object from pipeline of" - " type 'metagenomic'"): + with self.assertRaisesRegex(ValueError, "Cannot create an Amplicon run" + " using a metagenomic-" + "configured Pipeline."): Amplicon(metagenomic_pipeline, self.qiita_id, sn_tid_map_by_project, None) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index bb26f53b..37c4b569 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -11,29 +11,91 @@ from os.path import join, abspath from functools import partial from os import makedirs, chmod -import json from shutil import rmtree from os import environ, remove class BaseStepTests(TestCase): + CONFIGURATION = { + "configuration": { + "pipeline": { + "archive_path": ("sequence_processing_pipeline/tests/data/" + "sequencing/knight_lab_completed_runs"), + "search_paths": ["/tmp", "qp_klp/tests/data"], + "amplicon_search_paths": ["/tmp", "qp_klp/tests/data"] + }, + "bcl2fastq": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 36, + "modules_to_load": ["bcl2fastq_2.20.0.422"], + "executable_path": "bcl2fastq", + "per_process_memory_limit": "10gb" + }, + "bcl-convert": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 36, + "modules_to_load": ["bclconvert_3.7.5"], + "executable_path": "bcl-convert", + "per_process_memory_limit": "10gb" + }, + "qc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "wallclock_time_in_hours": 1, + "minimap_databases": ["/databases/minimap2/human-phix-db.mmi"], + "kraken2_database": "/databases/minimap2/hp_kraken-db.mmi", + "modules_to_load": ["fastp_0.20.1", "samtools_1.12", + " minimap2_2.18"], + "fastp_executable_path": "fastp", + "minimap2_executable_path": "minimap2", + "samtools_executable_path": "samtools", + "job_total_memory_limit": "20gb", + "job_pool_size": 30, + "job_max_array_length": 1000 + }, + "seqpro": { + "seqpro_path": "seqpro", + "modules_to_load": [] + }, + "fastqc": { + "nodes": 1, + "nprocs": 16, + "queue": "qiita", + "nthreads": 16, + "wallclock_time_in_hours": 1, + "modules_to_load": ["fastqc_0.11.5"], + "fastqc_executable_path": "fastqc", + "multiqc_executable_path": "multiqc", + "multiqc_config_file_path": ("sequence_processing_pipeline/" + "multiqc-bclconvert-config.yaml"), + "job_total_memory_limit": "20gb", + "job_pool_size": 30, + "job_max_array_length": 1000 + } + } + } + def setUp(self): package_root = abspath('./qp_klp') - self.path = partial(join, package_root, 'tests', 'data') + cc_path = partial(join, package_root, 'tests', 'data') self.good_config_file = join(package_root, 'configuration.json') self.good_run_id = '211021_A00000_0000_SAMPLE' - self.good_sample_sheet_path = self.path('good-sample-sheet.csv') - self.output_file_path = self.path('output_dir') + self.good_sample_sheet_path = cc_path('good-sample-sheet.csv') + self.output_file_path = cc_path('output_dir') self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) - self.pipeline = Pipeline(self.good_config_file, self.good_run_id, + self.pipeline = Pipeline(None, self.good_run_id, self.good_sample_sheet_path, None, self.output_file_path, self.qiita_id, - 'metagenomic', None) + 'metagenomic', BaseStepTests.CONFIGURATION) - tmp = json.load(open(self.good_config_file, 'r'))['configuration'] - self.config = tmp + self.config = BaseStepTests.CONFIGURATION['configuration'] self.fake_bin_path = self._get_searchable_path() From d9a6efaf6a03ba5ae2d2eac9811b42d1e14573b4 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 10:05:32 -0700 Subject: [PATCH 28/35] Merged klp_util.py into Step and klp.py based on feedback --- qp_klp/Metagenomic.py | 3 +- qp_klp/Step.py | 243 +++++++++++++++++++++++++++++++++++- qp_klp/klp.py | 64 +++++++--- qp_klp/klp_util.py | 278 ------------------------------------------ 4 files changed, 286 insertions(+), 302 deletions(-) delete mode 100644 qp_klp/klp_util.py diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index 5bfbf58e..149fc7de 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -1,9 +1,8 @@ from os import walk from os.path import exists, join, basename -from qp_klp.klp_util import FailedSamplesRecord from sequence_processing_pipeline.PipelineError import PipelineError import pandas as pd -from qp_klp.Step import Step +from qp_klp.Step import Step, FailedSamplesRecord class Metagenomic(Step): diff --git a/qp_klp/Step.py b/qp_klp/Step.py index b141ab0b..c64c649c 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -1,15 +1,60 @@ +from collections import defaultdict from itertools import chain +from json import dumps +from metapool import KLSampleSheet +from os import makedirs from os.path import join -from qp_klp.klp_util import map_sample_names_to_tube_ids from sequence_processing_pipeline.ConvertJob import ConvertJob from sequence_processing_pipeline.FastQCJob import FastQCJob from sequence_processing_pipeline.GenPrepFileJob import GenPrepFileJob from sequence_processing_pipeline.PipelineError import PipelineError +from sequence_processing_pipeline.Pipeline import Pipeline from sequence_processing_pipeline.QCJob import QCJob from subprocess import Popen, PIPE import pandas as pd +class FailedSamplesRecord: + def __init__(self, output_dir, samples): + # because we want to write out the list of samples that failed after + # each Job is run, and we want to organize that output by project, we + # need to keep a running state of failed samples, and reuse the method + # to reorganize the running-results and write them out to disk. + + self.output_path = join(output_dir, 'failed_samples.html') + + # create an initial dictionary with sample-ids as keys and their + # associated project-name and status as values. Afterwards, we'll + # filter out the sample-ids w/no status (meaning they were + # successfully processed) before writing the failed entries out to + # file. + self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} + + def write(self, failed_ids, job_name): + for failed_id in failed_ids: + # as a rule, if a failed_id were to appear in more than one + # audit(), preserve the earliest failure, rather than the + # latest one. + if self.failed[failed_id][1] is None: + self.failed[failed_id][1] = job_name + + # filter out the sample-ids w/out a failure status + filtered_fails = {x: self.failed[x] for x in self.failed if + self.failed[x][1] is not None} + + data = [] + for sample_id in filtered_fails: + project_name = filtered_fails[sample_id][0] + failed_at = filtered_fails[sample_id][1] + data.append({'Project': project_name, 'Sample ID': sample_id, + 'Failed at': failed_at}) + df = pd.DataFrame(data) + + with open(self.output_path, 'w') as f: + f.write(df.to_html(border=2, index=False, justify="left", + render_links=True, escape=False)) + + class Step: ''' The base Step class wraps the creation and running of the Job classes @@ -49,6 +94,130 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, self.prep_file_paths = None self.sifs = None + @classmethod + def generate_pipeline(cls, pipeline_type, input_file_path, lane_number, + config_fp, + run_identifier, out_dir, job_id): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + cls.update_sample_sheet(input_file_path, lane_number) + return Pipeline(config_fp, run_identifier, input_file_path, None, + out_dir, job_id, pipeline_type) + elif pipeline_type == 'amplicon': + return Pipeline(config_fp, run_identifier, None, input_file_path, + out_dir, job_id, pipeline_type) + else: + raise PipelineError( + f"'{pipeline_type}' is not a valid Pipeline type.") + + @classmethod + def update_sample_sheet(cls, sample_sheet_path, lane_number): + # use KLSampleSheet functionality to add/overwrite lane number. + sheet = KLSampleSheet(sample_sheet_path) + for sample in sheet: + sample['Lane'] = f'{lane_number}' + + with open(sample_sheet_path, 'w') as f: + sheet.write(f) + + @classmethod + def parse_prep_file(cls, prep_file_path): + metadata = pd.read_csv(prep_file_path, + dtype=str, + delimiter='\t', + # forces Pandas to not make the first column + # the index even when the values appear numeric. + index_col=False) + + if metadata is None: + raise ValueError(f"{prep_file_path} does not exist.") + + metadata.set_index('sample_name', inplace=True) + + # convert to standard dictionary. + return metadata.to_dict('index') + + @classmethod + def generate_special_map(cls, results, projects): + # this function should be able to be tested by passing in simulated = + # results from qclient. + + # trimmed files are stored by qiita_id. Find the qiita_id + # associated with each project and ensure a subdirectory exists + # for when it comes time to move the trimmed files. + special_map = [] + for project in projects: + upload_path = join(results['uploads'], project['qiita_id']) + makedirs(upload_path, exist_ok=True) + special_map.append((project['project_name'], upload_path, + project['qiita_id'])) + + return special_map + + @classmethod + def get_data_type(cls, pipeline_type, target_gene=None): + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + return pipeline_type + elif pipeline_type == 'amplicon': + if target_gene: + for key in {'16S', '18S', 'ITS'}: + if key in target_gene: + return key + else: + raise ValueError( + "target_gene must be specified for amplicon type") + else: + raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") + + @classmethod + def update_prep_templates(cls, qclient, prep_file_paths): + ''' + Update prep-template info in Qiita. Get dict of prep-ids by study-id. + :param qclient: + :param prep_file_paths: + :return: A dict of lists of prep-ids, keyed by study-id. + ''' + results = defaultdict(list) + + for study_id in prep_file_paths: + for prep_file_path in prep_file_paths[study_id]: + metadata = Step.parse_prep_file(prep_file_path) + target_gene = metadata[list(metadata.keys())[0]]['target_gene'] + + data = {'prep_info': dumps(metadata), + 'study': study_id, + 'data_type': Step.get_data_type(target_gene)} + + reply = qclient.post('/qiita_db/prep_template/', data=data) + prep_id = reply['prep'] + results[study_id].append(prep_id) + + return results + + @classmethod + def get_samples_in_qiita(cls, qclient, qiita_id): + ''' + Obtain lists for sample-names and tube-ids registered in Qiita. + :param qclient: QiitaClient object + :param qiita_id: Qiita ID for the project in question. + :return: a tuple of lists, one for sample-names, another for tube-ids. + ''' + samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') + + # remove Qiita ID as a prefix from the sample-names. + samples = {x.replace(f'{qiita_id}.', '') for x in samples} + + # find out if tube-ids are registered in the study. + categories = qclient.get(f'/api/v1/study/{qiita_id}' + '/samples/info')['categories'] + + if 'tube_id' in categories: + tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' + 'categories=tube_id')['samples'] + else: + tids = None + + return (samples, tids) + def _convert_bcl_to_fastq(self, config, input_file_path): convert_job = ConvertJob(self.pipeline.run_dir, self.pipeline.output_path, @@ -134,7 +303,7 @@ def _generate_prep_file(self, config, input_file_path, seqpro_path, # concatenate the lists of paths across all study_ids into a single # list. Replace sample-names w/tube-ids in all relevant prep-files. preps = list(chain.from_iterable(gpf_job.prep_file_paths.values())) - map_sample_names_to_tube_ids(preps, self.sn_tid_map_by_project) + Step.map_sample_names_to_tube_ids(preps, self.sn_tid_map_by_project) return gpf_job @@ -194,3 +363,73 @@ def generate_sifs(self, from_qiita): def get_prep_file_paths(self): return self.prep_file_paths + + def map_sample_names_to_tube_ids(self, prep_info_file_paths, + sn_tid_map_by_proj): + for proj in sn_tid_map_by_proj: + if sn_tid_map_by_proj[proj] is not None: + # this project has tube-ids registered in Qiita. + # find the prep-file associated with this project. + for prep_file in prep_info_file_paths: + # not the best check but good enough for now. + if proj in prep_file: + df = pd.read_csv(prep_file, sep='\t', + dtype=str, index_col=False) + # save copy of sample_name column as 'old_sample_name' + df['old_sample_name'] = df['sample_name'] + for i in df.index: + smpl_name = df.at[i, "sample_name"] + if not smpl_name.startswith('BLANK'): + # remove any leading zeroes if they exist + smpl_name = smpl_name.lstrip('0') + if smpl_name in sn_tid_map_by_proj[proj]: + tube_id = sn_tid_map_by_proj[proj][ + smpl_name] + df.at[i, "sample_name"] = tube_id + df.to_csv(prep_file, index=False, sep="\t") + + def update_blanks_in_qiita(self, sifs, qclient): + for sif_path in sifs: + # get study_id from sif_file_name ...something_14385_blanks.tsv + study_id = sif_path.split('_')[-2] + + df = pd.read_csv(sif_path, delimiter='\t', dtype=str) + + # Prepend study_id to make them compatible w/list from Qiita. + df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) + + # SIFs only contain BLANKs. Get the list of potentially new BLANKs. + blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] + blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] + if len(blanks) == 0: + # we have nothing to do so let's return early + return + + # Get list of BLANKs already registered in Qiita. + from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') + from_qiita = [x for x in from_qiita if + x.startswith(f'{study_id}.BLANK')] + + # Generate list of BLANKs that need to be ADDED to Qiita. + new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) + + if len(new_blanks): + # Generate dummy entries for each new BLANK, if any. + categories = qclient.get(f'/api/v1/study/{study_id}/samples/' + 'info')['categories'] + + # initialize payload w/required dummy categories + data = {i: {c: 1 for c in categories} for i in new_blanks} + + # populate payload w/additional columns and/or overwrite + # existing columns w/metadata from SIF file. + sif_data = df.set_index('sample_name').T.to_dict() + for new_blank in new_blanks: + for column in sif_data[new_blank]: + data[new_blank][column] = sif_data[new_blank][column] + + # http_patch will raise Error if insert failed. + qclient.http_patch(f'/api/v1/study/{study_id}/samples', + data=dumps(data)) + + return data diff --git a/qp_klp/klp.py b/qp_klp/klp.py index f85d96a6..b796b489 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -11,10 +11,7 @@ from random import sample as rsampl from qp_klp.Amplicon import Amplicon from qp_klp.Metagenomic import Metagenomic -from qp_klp.klp_util import (generate_pipeline, generate_special_map, - get_registered_samples_in_qiita, parse_prep_file, - update_blanks_in_qiita, update_prep_templates, - StatusUpdate) +from qp_klp.Step import Step from json import dumps from os import makedirs from os.path import join @@ -26,6 +23,33 @@ CONFIG_FP = environ["QP_KLP_CONFIG_FP"] +class StatusUpdate(): + def __init__(self, qclient, job_id, step_count): + self.qclient = qclient + self.job_id = job_id + self.msg = '' + self.current_step = 0 + self.step_count = step_count + + def update_job_status(self, status, id): + # internal function implements a callback function for Pipeline.run(). + # :param id: PBS/Torque/or some other informative and current job id. + # :param status: status message + self.qclient.update_job_step(self.job_id, + self.msg + f" ({id}: {status})") + + def update_current_message(self, msg, include_step=True): + # internal function that sets current_message to the new value before + # updating the job step in the UI. + if include_step: + self.current_step += 1 + self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" + else: + self.msg = msg + + self.qclient.update_job_step(self.job_id, self.msg) + + def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): """Sequence Processing Pipeline command @@ -65,7 +89,7 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): pipeline_type = 'metagenomic' step_count = 6 elif Pipeline.is_mapping_file(uif_path): - # if file is readable as a basic TSV and contains all of the required + # if file is readable as a basic TSV and contains all the required # headers, then treat this as a mapping file, even if it's an invalid # one. pipeline_type = 'amplicon' @@ -84,24 +108,24 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): f.write(user_input_file['body']) try: - pipeline = generate_pipeline(pipeline_type, - uif_path, - lane_number, - CONFIG_FP, - run_identifier, - out_dir, - job_id) + pipeline = Step.generate_pipeline(pipeline_type, + uif_path, + lane_number, + CONFIG_FP, + run_identifier, + out_dir, + job_id) errors = [] sn_tid_map_by_project = {} - # TODO: Update get_project_info() so that it can return a list of - # samples in projects['samples']. Include blanks in projects['blanks'] + # Update get_project_info() so that it can return a list of + # samples in projects['samples']. Include blanks in projects['blanks'] projects = pipeline.get_project_info(short_names=True) for project in projects: - qsam, tids = get_registered_samples_in_qiita(qclient, - project['qiita_id']) + qsam, tids = Step.get_samples_in_qiita(qclient, + project['qiita_id']) # compare the list of samples from the user against the list of # registered samples from Qiita. If the project has tube-ids, then @@ -161,7 +185,7 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): # find the uploads directory all trimmed files will need to be # moved to and generate a map. - special_map = generate_special_map( + special_map = Step.generate_special_map( qclient.get("/qiita_db/artifacts/types/"), pipeline.get_project_info()) @@ -189,17 +213,17 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): sifs = step.generate_sifs(from_qiita) - update_blanks_in_qiita(sifs, qclient) + Step.update_blanks_in_qiita(sifs, qclient) prep_file_paths = step.get_prep_file_paths() - update_prep_templates(qclient, prep_file_paths) + Step.update_prep_templates(qclient, prep_file_paths) touched_studies_prep_info = defaultdict(list) for study_id in step.prep_file_paths: for prep_file_path in step.prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) + metadata = Step.parse_prep_file(prep_file_path) data = {'prep_info': dumps(metadata), 'study': study_id, # THIS MIGHT NEED CONVERSION FROM AMPLICON TO 16S diff --git a/qp_klp/klp_util.py b/qp_klp/klp_util.py deleted file mode 100644 index 779a0ce4..00000000 --- a/qp_klp/klp_util.py +++ /dev/null @@ -1,278 +0,0 @@ -# ----------------------------------------------------------------------------- -# Copyright (c) 2014--, The Qiita Development Team. -# -# Distributed under the terms of the BSD 3-clause License. -# -# The full license is in the file LICENSE, distributed with this software. -# ----------------------------------------------------------------------------- -from os import environ -import pandas as pd -from json import dumps -from metapool import KLSampleSheet -from os import makedirs -from os.path import join -from sequence_processing_pipeline.Pipeline import Pipeline -from sequence_processing_pipeline.PipelineError import PipelineError -from collections import defaultdict - - -CONFIG_FP = environ["QP_KLP_CONFIG_FP"] - - -def update_blanks_in_qiita(sifs, qclient): - for sif_path in sifs: - # get study_id from sif_file_name ...something_14385_blanks.tsv - study_id = sif_path.split('_')[-2] - - df = pd.read_csv(sif_path, delimiter='\t', dtype=str) - - # Prepend study_id to make them compatible w/list from Qiita. - df['sample_name'] = f'{study_id}.' + df['sample_name'].astype(str) - - # SIFs only contain BLANKs. Get the list of potentially new BLANKs. - blank_ids = [i for i in df['sample_name'] if 'blank' in i.lower()] - blanks = df[df['sample_name'].isin(blank_ids)]['sample_name'] - if len(blanks) == 0: - # we have nothing to do so let's return early - return - - # Get list of BLANKs already registered in Qiita. - from_qiita = qclient.get(f'/api/v1/study/{study_id}/samples') - from_qiita = [x for x in from_qiita if - x.startswith(f'{study_id}.BLANK')] - - # Generate list of BLANKs that need to be ADDED to Qiita. - new_blanks = (set(blanks) | set(from_qiita)) - set(from_qiita) - - if len(new_blanks): - # Generate dummy entries for each new BLANK, if any. - categories = qclient.get(f'/api/v1/study/{study_id}/samples/' - 'info')['categories'] - - # initialize payload w/required dummy categories - data = {i: {c: 1 for c in categories} for i in new_blanks} - - # populate payload w/additional columns and/or overwrite existing - # columns w/metadata from SIF file. - sif_data = df.set_index('sample_name').T.to_dict() - for new_blank in new_blanks: - for column in sif_data[new_blank]: - data[new_blank][column] = sif_data[new_blank][column] - - # http_patch will raise Error if insert failed. - qclient.http_patch(f'/api/v1/study/{study_id}/samples', - data=dumps(data)) - - return data - - -def map_sample_names_to_tube_ids(prep_info_file_paths, sn_tid_map_by_proj): - for proj in sn_tid_map_by_proj: - if sn_tid_map_by_proj[proj] is not None: - # this project has tube-ids registered in Qiita. - # find the prep-file associated with this project. - for prep_file in prep_info_file_paths: - # not the best check but good enough for now. - if proj in prep_file: - df = pd.read_csv(prep_file, sep='\t', - dtype=str, index_col=False) - # save a copy of sample_name column as 'old_sample_name' - df['old_sample_name'] = df['sample_name'] - for i in df.index: - smpl_name = df.at[i, "sample_name"] - if not smpl_name.startswith('BLANK'): - # remove any leading zeroes if they exist - smpl_name = smpl_name.lstrip('0') - if smpl_name in sn_tid_map_by_proj[proj]: - tube_id = sn_tid_map_by_proj[proj][smpl_name] - df.at[i, "sample_name"] = tube_id - df.to_csv(prep_file, index=False, sep="\t") - - -class StatusUpdate(): - def __init__(self, qclient, job_id, step_count): - self.qclient = qclient - self.job_id = job_id - self.msg = '' - self.current_step = 0 - self.step_count = step_count - - def update_job_status(self, status, id): - # internal function implements a callback function for Pipeline.run(). - # :param id: PBS/Torque/or some other informative and current job id. - # :param status: status message - self.qclient.update_job_step(self.job_id, - self.msg + f" ({id}: {status})") - - def update_current_message(self, msg, include_step=True): - # internal function that sets current_message to the new value before - # updating the job step in the UI. - if include_step: - self.current_step += 1 - self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" - else: - self.msg = msg - - self.qclient.update_job_step(self.job_id, self.msg) - - -class FailedSamplesRecord: - def __init__(self, output_dir, samples): - # because we want to write out the list of samples that failed after - # each Job is run, and we want to organize that output by project, we - # need to keep a running state of failed samples, and reuse the method - # to reorganize the running-results and write them out to disk. - - self.output_path = join(output_dir, 'failed_samples.html') - - # create an initial dictionary with sample-ids as keys and their - # associated project-name and status as values. Afterwards, we'll - # filter out the sample-ids w/no status (meaning they were - # successfully processed) before writing the failed entries out to - # file. - self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} - - def write(self, failed_ids, job_name): - for failed_id in failed_ids: - # as a rule, if a failed_id were to appear in more than one - # audit(), preserve the earliest failure, rather than the - # latest one. - if self.failed[failed_id][1] is None: - self.failed[failed_id][1] = job_name - - # filter out the sample-ids w/out a failure status - filtered_fails = {x: self.failed[x] for x in self.failed if - self.failed[x][1] is not None} - - data = [] - for sample_id in filtered_fails: - project_name = filtered_fails[sample_id][0] - failed_at = filtered_fails[sample_id][1] - data.append({'Project': project_name, 'Sample ID': sample_id, - 'Failed at': failed_at}) - df = pd.DataFrame(data) - - with open(self.output_path, 'w') as f: - f.write(df.to_html(border=2, index=False, justify="left", - render_links=True, escape=False)) - - -def parse_prep_file(prep_file_path): - metadata = pd.read_csv(prep_file_path, - dtype=str, - delimiter='\t', - # forces Pandas to not make the first column the - # index even when the values appear numeric. - index_col=False) - - if metadata is None: - raise ValueError(f"{prep_file_path} does not exist.") - - metadata.set_index('sample_name', inplace=True) - - # convert to standard dictionary. - return metadata.to_dict('index') - - -def update_sample_sheet(sample_sheet_path, lane_number): - # use KLSampleSheet functionality to add/overwrite lane number. - sheet = KLSampleSheet(sample_sheet_path) - for sample in sheet: - sample['Lane'] = f'{lane_number}' - - with open(sample_sheet_path, 'w') as f: - sheet.write(f) - - -def generate_special_map(results, projects): - # this function should be able to be tested by passing in simulated = - # results from qclient. - - # trimmed files are stored by qiita_id. Find the qiita_id - # associated with each project and ensure a subdirectory exists - # for when it comes time to move the trimmed files. - special_map = [] - for project in projects: - upload_path = join(results['uploads'], project['qiita_id']) - makedirs(upload_path, exist_ok=True) - special_map.append((project['project_name'], upload_path, - project['qiita_id'])) - - return special_map - - -def generate_pipeline(pipeline_type, input_file_path, lane_number, config_fp, - run_identifier, out_dir, job_id): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - update_sample_sheet(input_file_path, lane_number) - return Pipeline(config_fp, run_identifier, input_file_path, None, - out_dir, job_id, pipeline_type) - elif pipeline_type == 'amplicon': - return Pipeline(config_fp, run_identifier, None, input_file_path, - out_dir, job_id, pipeline_type) - else: - raise PipelineError(f"'{pipeline_type}' is not a valid Pipeline type.") - - -def get_data_type(pipeline_type, target_gene=None): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - return pipeline_type - elif pipeline_type == 'amplicon': - if target_gene: - for key in {'16S', '18S', 'ITS'}: - if key in target_gene: - return key - else: - raise ValueError("target_gene must be specified for amplicon type") - else: - raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") - - -def update_prep_templates(qclient, prep_file_paths): - ''' - Update prep-template info in Qiita. Get breakdown of prep-ids by study-id. - :param qclient: - :param prep_file_paths: - :return: A dict of lists of prep-ids, keyed by study-id. - ''' - results = defaultdict(list) - - for study_id in prep_file_paths: - for prep_file_path in prep_file_paths[study_id]: - metadata = parse_prep_file(prep_file_path) - target_gene = metadata[list(metadata.keys())[0]]['target_gene'] - - data = {'prep_info': dumps(metadata), - 'study': study_id, - 'data_type': get_data_type(target_gene)} - - reply = qclient.post('/qiita_db/prep_template/', data=data) - prep_id = reply['prep'] - results[study_id].append(prep_id) - - return results - - -def get_registered_samples_in_qiita(qclient, qiita_id): - ''' - Obtain lists for sample-names and tube-ids registered in Qiita. - :param qclient: QiitaClient object - :param qiita_id: Qiita ID for the project in question. - :return: a tuple of lists, one for sample-names and another for tube-ids. - ''' - samples = qclient.get(f'/api/v1/study/{qiita_id}/samples') - - # remove Qiita ID as a prefix from the sample-names. - samples = {x.replace(f'{qiita_id}.', '') for x in samples} - - # find out if tube-ids are registered in the study. - categories = qclient.get(f'/api/v1/study/{qiita_id}' - '/samples/info')['categories'] - - if 'tube_id' in categories: - tids = qclient.get(f'/api/v1/study/{qiita_id}/samples/' - 'categories=tube_id')['samples'] - else: - tids = None - - return (samples, tids) From 0d82aee1fd5c27ba0399c61febc443eff7dcc953 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 10:15:13 -0700 Subject: [PATCH 29/35] Removed test_klp_util.py --- qp_klp/tests/test_klp_util.py | 151 ---------------------------------- qp_klp/tests/test_step.py | 118 ++++++++++++++++++++++++++ 2 files changed, 118 insertions(+), 151 deletions(-) delete mode 100644 qp_klp/tests/test_klp_util.py diff --git a/qp_klp/tests/test_klp_util.py b/qp_klp/tests/test_klp_util.py deleted file mode 100644 index ef4a778f..00000000 --- a/qp_klp/tests/test_klp_util.py +++ /dev/null @@ -1,151 +0,0 @@ -# ----------------------------------------------------------------------------- -# Copyright (c) 2014--, The Qiita Development Team. -# -# Distributed under the terms of the BSD 3-clause License. -# -# The full license is in the file LICENSE, distributed with this software. -# ----------------------------------------------------------------------------- -from unittest import TestCase -from qp_klp.klp_util import parse_prep_file -from os.path import join - - -class KLPUtilTests(TestCase): - def test_update_blanks_in_qiita(self): - pass - - def test_map_sample_names_to_tube_ids(self): - pass - - def test_update_sample_sheet(self): - pass - - def test_generate_special_map(self): - pass - - def test_generate_pipeline(self): - pass - - def test_update_prep_templates(self): - pass - - def test_get_registered_samples_in_qiita(self): - pass - - def test_parse_prep_file(self): - good_prep_file = join('qp_klp', 'tests', 'good-prep-file-small.txt') - - obs = parse_prep_file(good_prep_file) - - # assert that prep-files that begin with sample-names of the form - # '363192526', '1e-3', and '123.000' are parsed as strings instead of - # numeric values. - exp = {'363192526': {'experiment_design_description': 'sample project', - 'library_construction_protocol': ('Knight Lab Kap' - 'a HyperPlus'), - 'platform': 'Illumina', 'run_center': 'KLM', - 'run_date': '2022-04-18', - 'run_prefix': '363192526_S9_L001', - 'sequencing_meth': 'sequencing by synthesis', - 'center_name': 'UCSD', - 'center_project_name': 'Sample_Project', - 'instrument_model': 'Illumina iSeq', - 'runid': '20220101_FS10001776_07_ABC12345-4567', - 'lane': '1', 'sample project': 'Sample_Project', - 'well_description': ('Sample_Project_99999_1-' - '4.363192526.A3'), - 'i5_index_id': 'iTru5_09_A', - 'sample_plate': 'Sample_Project_99999_1-4', - 'index2': 'TCTGAGAG', 'index': 'CATCTACG', - 'sample_well': 'A3', - 'i7_index_id': 'iTru7_114_05', - 'raw_reads': '10749', - 'quality_filtered_reads': '1', - 'non_host_reads': '4'}, - '363192073': {'experiment_design_description': 'sample project', - 'library_construction_protocol': ('Knight Lab Ka' - 'pa HyperPlus'), - 'platform': 'Illumina', 'run_center': 'KLM', - 'run_date': '2022-04-18', - 'run_prefix': '363192073_S195_L001', - 'sequencing_meth': 'sequencing by synthesis', - 'center_name': 'UCSD', - 'center_project_name': 'Sample_Project', - 'instrument_model': 'Illumina iSeq', - 'runid': '20220101_FS10001776_07_ABC12345-4567', - 'lane': '1', 'sample project': 'Sample_Project', - 'well_description': ('Sample_Project_99999_1-' - '4.363192073.F1'), - 'i5_index_id': 'iTru5_103_A', - 'sample_plate': 'Sample_Project_99999_1-4', - 'index2': 'TGGTCCTT', 'index': 'GCAATTCG', - 'sample_well': 'F1', - 'i7_index_id': 'iTru7_305_11', - 'raw_reads': '16435', - 'quality_filtered_reads': '2', - 'non_host_reads': '5'}, - '363193755': {'experiment_design_description': 'sample project', - 'library_construction_protocol': ('Knight Lab Ka' - 'pa HyperPlus'), - 'platform': 'Illumina', 'run_center': 'KLM', - 'run_date': '2022-04-18', - 'run_prefix': '363193755_S7_L001', - 'sequencing_meth': 'sequencing by synthesis', - 'center_name': 'UCSD', - 'center_project_name': 'Sample_Project', - 'instrument_model': 'Illumina iSeq', - 'runid': '20220101_FS10001776_07_ABC12345-4567', - 'lane': '1', 'sample project': 'Sample_Project', - 'well_description': ('Sample_Project_99999_1-' - '4.363193755.M1'), - 'i5_index_id': 'iTru5_07_A', - 'sample_plate': 'Sample_Project_99999_1-4', - 'index2': 'GGTGTCTT', 'index': 'GATTGCTC', - 'sample_well': 'M1', - 'i7_index_id': 'iTru7_114_03', - 'raw_reads': '14303', - 'quality_filtered_reads': '3', - 'non_host_reads': '6'}, - '1e-3': {'experiment_design_description': 'sample project', - 'library_construction_protocol': ('Knight Lab Kapa ' - 'HyperPlus'), - 'platform': 'Illumina', 'run_center': 'KLM', - 'run_date': '2022-04-18', - 'run_prefix': '363192073_S195_L001', - 'sequencing_meth': 'sequencing by synthesis', - 'center_name': 'UCSD', - 'center_project_name': 'Sample_Project', - 'instrument_model': 'Illumina iSeq', - 'runid': '20220101_FS10001776_07_ABC12345-4567', - 'lane': '1', 'sample project': 'Sample_Project', - 'well_description': ('Sample_Project_99999_1-' - '4.363192073.F1'), - 'i5_index_id': 'iTru5_103_A', - 'sample_plate': 'Sample_Project_99999_1-4', - 'index2': 'TGGTCCTT', 'index': 'GCAATTCG', - 'sample_well': 'F1', 'i7_index_id': 'iTru7_305_11', - 'raw_reads': '16435', 'quality_filtered_reads': '11', - 'non_host_reads': '13'}, - '123.000': {'experiment_design_description': 'sample project', - 'library_construction_protocol': ('Knight Lab Kapa' - ' HyperPlus'), - 'platform': 'Illumina', 'run_center': 'KLM', - 'run_date': '2022-04-18', - 'run_prefix': '363193755_S7_L001', - 'sequencing_meth': 'sequencing by synthesis', - 'center_name': 'UCSD', - 'center_project_name': 'Sample_Project', - 'instrument_model': 'Illumina iSeq', - 'runid': '20220101_FS10001776_07_ABC12345-4567', - 'lane': '1', 'sample project': 'Sample_Project', - 'well_description': ('Sample_Project_99999_1-' - '4.363193755.M1'), - 'i5_index_id': 'iTru5_07_A', - 'sample_plate': 'Sample_Project_99999_1-4', - 'index2': 'GGTGTCTT', 'index': 'GATTGCTC', - 'sample_well': 'M1', 'i7_index_id': 'iTru7_114_03', - 'raw_reads': '14303', - 'quality_filtered_reads': '12', - 'non_host_reads': '14'}} - - self.assertDictEqual(obs, exp) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 37c4b569..cb12caec 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -266,3 +266,121 @@ def test_generate_sifs(self): def test_get_prep_file_paths(self): pass + + def test_parse_prep_file(self): + good_prep_file = join('qp_klp', 'tests', 'good-prep-file-small.txt') + + obs = Step.parse_prep_file(good_prep_file) + + # assert that prep-files that begin with sample-names of the form + # '363192526', '1e-3', and '123.000' are parsed as strings instead of + # numeric values. + exp = {'363192526': {'experiment_design_description': 'sample project', + 'library_construction_protocol': ('Knight Lab Kap' + 'a HyperPlus'), + 'platform': 'Illumina', 'run_center': 'KLM', + 'run_date': '2022-04-18', + 'run_prefix': '363192526_S9_L001', + 'sequencing_meth': 'sequencing by synthesis', + 'center_name': 'UCSD', + 'center_project_name': 'Sample_Project', + 'instrument_model': 'Illumina iSeq', + 'runid': '20220101_FS10001776_07_ABC12345-4567', + 'lane': '1', 'sample project': 'Sample_Project', + 'well_description': ('Sample_Project_99999_1-' + '4.363192526.A3'), + 'i5_index_id': 'iTru5_09_A', + 'sample_plate': 'Sample_Project_99999_1-4', + 'index2': 'TCTGAGAG', 'index': 'CATCTACG', + 'sample_well': 'A3', + 'i7_index_id': 'iTru7_114_05', + 'raw_reads': '10749', + 'quality_filtered_reads': '1', + 'non_host_reads': '4'}, + '363192073': {'experiment_design_description': 'sample project', + 'library_construction_protocol': ('Knight Lab Ka' + 'pa HyperPlus'), + 'platform': 'Illumina', 'run_center': 'KLM', + 'run_date': '2022-04-18', + 'run_prefix': '363192073_S195_L001', + 'sequencing_meth': 'sequencing by synthesis', + 'center_name': 'UCSD', + 'center_project_name': 'Sample_Project', + 'instrument_model': 'Illumina iSeq', + 'runid': '20220101_FS10001776_07_ABC12345-4567', + 'lane': '1', 'sample project': 'Sample_Project', + 'well_description': ('Sample_Project_99999_1-' + '4.363192073.F1'), + 'i5_index_id': 'iTru5_103_A', + 'sample_plate': 'Sample_Project_99999_1-4', + 'index2': 'TGGTCCTT', 'index': 'GCAATTCG', + 'sample_well': 'F1', + 'i7_index_id': 'iTru7_305_11', + 'raw_reads': '16435', + 'quality_filtered_reads': '2', + 'non_host_reads': '5'}, + '363193755': {'experiment_design_description': 'sample project', + 'library_construction_protocol': ('Knight Lab Ka' + 'pa HyperPlus'), + 'platform': 'Illumina', 'run_center': 'KLM', + 'run_date': '2022-04-18', + 'run_prefix': '363193755_S7_L001', + 'sequencing_meth': 'sequencing by synthesis', + 'center_name': 'UCSD', + 'center_project_name': 'Sample_Project', + 'instrument_model': 'Illumina iSeq', + 'runid': '20220101_FS10001776_07_ABC12345-4567', + 'lane': '1', 'sample project': 'Sample_Project', + 'well_description': ('Sample_Project_99999_1-' + '4.363193755.M1'), + 'i5_index_id': 'iTru5_07_A', + 'sample_plate': 'Sample_Project_99999_1-4', + 'index2': 'GGTGTCTT', 'index': 'GATTGCTC', + 'sample_well': 'M1', + 'i7_index_id': 'iTru7_114_03', + 'raw_reads': '14303', + 'quality_filtered_reads': '3', + 'non_host_reads': '6'}, + '1e-3': {'experiment_design_description': 'sample project', + 'library_construction_protocol': ('Knight Lab Kapa ' + 'HyperPlus'), + 'platform': 'Illumina', 'run_center': 'KLM', + 'run_date': '2022-04-18', + 'run_prefix': '363192073_S195_L001', + 'sequencing_meth': 'sequencing by synthesis', + 'center_name': 'UCSD', + 'center_project_name': 'Sample_Project', + 'instrument_model': 'Illumina iSeq', + 'runid': '20220101_FS10001776_07_ABC12345-4567', + 'lane': '1', 'sample project': 'Sample_Project', + 'well_description': ('Sample_Project_99999_1-' + '4.363192073.F1'), + 'i5_index_id': 'iTru5_103_A', + 'sample_plate': 'Sample_Project_99999_1-4', + 'index2': 'TGGTCCTT', 'index': 'GCAATTCG', + 'sample_well': 'F1', 'i7_index_id': 'iTru7_305_11', + 'raw_reads': '16435', 'quality_filtered_reads': '11', + 'non_host_reads': '13'}, + '123.000': {'experiment_design_description': 'sample project', + 'library_construction_protocol': ('Knight Lab Kapa' + ' HyperPlus'), + 'platform': 'Illumina', 'run_center': 'KLM', + 'run_date': '2022-04-18', + 'run_prefix': '363193755_S7_L001', + 'sequencing_meth': 'sequencing by synthesis', + 'center_name': 'UCSD', + 'center_project_name': 'Sample_Project', + 'instrument_model': 'Illumina iSeq', + 'runid': '20220101_FS10001776_07_ABC12345-4567', + 'lane': '1', 'sample project': 'Sample_Project', + 'well_description': ('Sample_Project_99999_1-' + '4.363193755.M1'), + 'i5_index_id': 'iTru5_07_A', + 'sample_plate': 'Sample_Project_99999_1-4', + 'index2': 'GGTGTCTT', 'index': 'GATTGCTC', + 'sample_well': 'M1', 'i7_index_id': 'iTru7_114_03', + 'raw_reads': '14303', + 'quality_filtered_reads': '12', + 'non_host_reads': '14'}} + + self.assertDictEqual(obs, exp) From 8392d2407b69f1e7678d886674ec4281c22aa7cb Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 13:22:15 -0700 Subject: [PATCH 30/35] Updates based on testing --- qp_klp/Metagenomic.py | 2 +- qp_klp/Step.py | 35 +- qp_klp/klp.py | 126 +- qp_klp/tests/data/good-sample-sheet.csv | 1628 +++++++++++------------ qp_klp/tests/test_step.py | 45 +- 5 files changed, 926 insertions(+), 910 deletions(-) diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index 149fc7de..662f7e97 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -53,7 +53,7 @@ def generate_prep_file(self): raise ValueError("reports not yet generated") job = super()._generate_prep_file(config, - self.pipeline.sample_sheet, + self.pipeline.sample_sheet.path, config['seqpro_path'], self.project_names) diff --git a/qp_klp/Step.py b/qp_klp/Step.py index c64c649c..2ce00396 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -154,22 +154,7 @@ def generate_special_map(cls, results, projects): return special_map @classmethod - def get_data_type(cls, pipeline_type, target_gene=None): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: - return pipeline_type - elif pipeline_type == 'amplicon': - if target_gene: - for key in {'16S', '18S', 'ITS'}: - if key in target_gene: - return key - else: - raise ValueError( - "target_gene must be specified for amplicon type") - else: - raise ValueError(f"'{pipeline_type}' is not a valid pipeline type") - - @classmethod - def update_prep_templates(cls, qclient, prep_file_paths): + def update_prep_templates(cls, qclient, prep_file_paths, pipeline_type): ''' Update prep-template info in Qiita. Get dict of prep-ids by study-id. :param qclient: @@ -181,11 +166,23 @@ def update_prep_templates(cls, qclient, prep_file_paths): for study_id in prep_file_paths: for prep_file_path in prep_file_paths[study_id]: metadata = Step.parse_prep_file(prep_file_path) - target_gene = metadata[list(metadata.keys())[0]]['target_gene'] - data = {'prep_info': dumps(metadata), 'study': study_id, - 'data_type': Step.get_data_type(target_gene)} + 'data_type': None} + if pipeline_type in ['metagenomic', 'metatranscriptomic']: + data['data_type'] = pipeline_type + elif pipeline_type == 'amplicon': + if 'target_gene' in metadata[list(metadata.keys())[0]]: + tg = metadata[list(metadata.keys())[0]]['target_gene'] + for key in {'16S', '18S', 'ITS'}: + if key in tg: + data['data_type'] = key + else: + raise ValueError("target_gene must be specified for " + "amplicon type") + else: + raise ValueError(f"'{pipeline_type}' is not a valid " + "pipeline type") reply = qclient.post('/qiita_db/prep_template/', data=data) prep_id = reply['prep'] diff --git a/qp_klp/klp.py b/qp_klp/klp.py index b796b489..86858c53 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -24,12 +24,13 @@ class StatusUpdate(): - def __init__(self, qclient, job_id, step_count): + def __init__(self, qclient, job_id, msgs): self.qclient = qclient self.job_id = job_id self.msg = '' - self.current_step = 0 - self.step_count = step_count + self.current_step = 1 + self.step_count = len(msgs) + self.msgs = msgs def update_job_status(self, status, id): # internal function implements a callback function for Pipeline.run(). @@ -38,14 +39,16 @@ def update_job_status(self, status, id): self.qclient.update_job_step(self.job_id, self.msg + f" ({id}: {status})") - def update_current_message(self, msg, include_step=True): + def update_current_message(self, include_step=True): # internal function that sets current_message to the new value before # updating the job step in the UI. if include_step: - self.current_step += 1 - self.msg = f"Step {self.current_step} of {self.step_count}: {msg}" + self.msg = (f"Step {self.current_step} of {self.step_count}: " + f"{self.msgs[self.step_count]}") else: - self.msg = msg + self.msg = (f"{self.msgs[self.step_count]}") + + self.current_step += 1 self.qclient.update_job_step(self.job_id, self.msg) @@ -69,6 +72,9 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): bool, list, str The results of the job """ + + # available fields for parameters are: + # run_identifier, sample_sheet, content_type, filename, lane_number run_identifier = parameters.pop('run_identifier') user_input_file = parameters.pop('sample_sheet') lane_number = parameters.pop('lane_number') @@ -83,29 +89,34 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): # replace any whitespace in the filename with underscores uif_path = out_path(user_input_file['filename'].replace(' ', '_')) + # save raw data to file + with open(uif_path, 'w') as f: + f.write(user_input_file['body']) + if Pipeline.is_sample_sheet(uif_path): # if file follows basic sample-sheet format, then it is most likely # a sample-sheet, even if it's an invalid one. pipeline_type = 'metagenomic' - step_count = 6 elif Pipeline.is_mapping_file(uif_path): # if file is readable as a basic TSV and contains all the required # headers, then treat this as a mapping file, even if it's an invalid # one. pipeline_type = 'amplicon' lane_number = -1 - step_count = 5 else: # file doesn't look like a sample-sheet, or a valid mapping file. return False, None, ("Your uploaded file doesn't appear to be a sample" "-sheet or a mapping-file.") - status_line = StatusUpdate(qclient, job_id, step_count) - status_line.update_current_message("Setting up pipeline") + msgs = ["Setting up pipeline", "Getting project information", + "Converting BCL to Fastq", "Performing Quality Control", + "Generating FastQC Reports", "Generating Prep Files", + "Generating Sample Information ", "Updating Blanks in Qiita", + "Adding Prep Templates to Qiita", "Packaging results", + "Finishing up"] - # save raw data to file - with open(uif_path, 'w') as f: - f.write(user_input_file['body']) + status_line = StatusUpdate(qclient, job_id, msgs) + status_line.update_current_message() try: pipeline = Step.generate_pipeline(pipeline_type, @@ -115,10 +126,17 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): run_identifier, out_dir, job_id) + except PipelineError as e: + # assume AttributeErrors are issues w/bad sample-sheets or + # mapping-files. + return False, None, str(e) + try: errors = [] sn_tid_map_by_project = {} + status_line.update_current_message() + # Update get_project_info() so that it can return a list of # samples in projects['samples']. Include blanks in projects['blanks'] projects = pipeline.get_project_info(short_names=True) @@ -126,59 +144,34 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): for project in projects: qsam, tids = Step.get_samples_in_qiita(qclient, project['qiita_id']) + qsam = set(qsam) + tids = {tids[k][0] for k in tids} if tids else None # compare the list of samples from the user against the list of # registered samples from Qiita. If the project has tube-ids, then # compare against tids rather than qsam. - samples = project['samples'] + samples = set(pipeline.get_sample_ids()) + + # strip any leading zeroes from the sample-ids. Note that + # if a sample-id has more than one leading zero, all of + # them will be removed. + # my_samples = {x.lstrip('0') for x in samples} + sample_name_diff = samples - tids if tids else samples - qsam project_name = project['project_name'] - qiita_id = project['qiita_id'] - qurl = f'/api/v1/study/{qiita_id}/samples' - - if tids: - # strip any leading zeroes from the sample-ids. Note that - # if a sample-id has more than one leading zero, all of - # them will be removed. - my_samples = {x.lstrip('0') for x in samples} - # once any leading zeros have been removed, recalculate - # sample_name_diff before continuing processing. - sample_name_diff = my_samples - qsam - - # before we report as an error, check tube_id. - if pipeline_type == 'metagenomic': - tids = qclient.get(f'{qurl}/categories=tube_id')[ - 'samples'] - - # generate a map of sample_names to tube_ids for - # GenPrepFileJob. - sn_tid_map_by_project[project_name] = { - y[0]: x.replace(f'{qiita_id}.', '') for x, y in - tids.items()} - tids = set(sn_tid_map_by_project[project_name].keys()) - tube_id_diff = my_samples - tids - if not tube_id_diff: - continue - len_tube_id_overlap = len(tube_id_diff) - tidsx = ', '.join( - tids if len(tids) < 6 else rsampl(tids, k=5)) - - error_tube_id = ( - f'tube_id in Qiita but {len_tube_id_overlap} missing ' - f'samples. Some samples from tube_id: {tidsx}.') - - len_overlap = len(sample_name_diff) - # selecting at random k=5 samples to minimize space in display - samx = ', '.join(qsam if len(qsam) < 6 else rsampl(qsam, k=5)) - - # selecting the up to 4 first samples to minimize space in - # display - missing = ', '.join(sorted(sample_name_diff)[:4]) - errors.append( - f'{project_name} has {len_overlap} missing samples (i.e. ' - f'{missing}). Some samples from Qiita: {samx}. ' - f'{error_tube_id}') + + if sample_name_diff: + len_overlap = len(sample_name_diff) + # selecting at random k=5 samples to minimize space in display + samx = ', '.join(qsam if len(qsam) < 6 else rsampl(qsam, k=5)) + + # selecting the up to 4 first samples to minimize space in + # display + missing = ', '.join(sorted(sample_name_diff)[:4]) + errors.append( + f'{project_name} has {len_overlap} missing samples (i.e. ' + f'{missing}). Some samples from Qiita: {samx}. ') if errors: raise PipelineError('\n'.join(errors)) @@ -197,12 +190,16 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): step = Amplicon(pipeline, job_id, sn_tid_map_by_project, status_line) + status_line.update_current_message() step.convert_bcl_to_fastq() + status_line.update_current_message() step.quality_control() + status_line.update_current_message() step.generate_reports() + status_line.update_current_message() step.generate_prep_file() from_qiita = {} @@ -211,13 +208,17 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): samples = list(qclient.get(f'/api/v1/study/{study_id}/samples')) from_qiita[study_id] = samples + status_line.update_current_message() sifs = step.generate_sifs(from_qiita) + status_line.update_current_message() Step.update_blanks_in_qiita(sifs, qclient) prep_file_paths = step.get_prep_file_paths() - Step.update_prep_templates(qclient, prep_file_paths) + status_line.update_current_message() + ptype = step.pipeline.pipeline_type + Step.update_prep_templates(qclient, prep_file_paths, ptype) touched_studies_prep_info = defaultdict(list) @@ -226,7 +227,6 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): metadata = Step.parse_prep_file(prep_file_path) data = {'prep_info': dumps(metadata), 'study': study_id, - # THIS MIGHT NEED CONVERSION FROM AMPLICON TO 16S 'data_type': step.pipeline.pipeline_type} reply = qclient.post('/qiita_db/prep_template/', data=data) @@ -235,8 +235,10 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): touched_studies_prep_info[study_id].append(prep_id) # generate commands to execute + status_line.update_current_message() step.generate_commands(special_map, touched_studies_prep_info) + status_line.update_current_message() step.execute_commands() except PipelineError as e: diff --git a/qp_klp/tests/data/good-sample-sheet.csv b/qp_klp/tests/data/good-sample-sheet.csv index 0d406603..138705e2 100644 --- a/qp_klp/tests/data/good-sample-sheet.csv +++ b/qp_klp/tests/data/good-sample-sheet.csv @@ -1,814 +1,814 @@ -[Header],,,,,,,,,, -IEMFileVersion,4,,,,,,,,, -Investigator Name,Knight,,,,,,,,, -Experiment Name,RKL0042,,,,,,,,, -Date,2020-02-26,,,,,,,,, -Workflow,GenerateFASTQ,,,,,,,,, -Application,FASTQ Only,,,,,,,,, -Assay,Metagenomic,,,,,,,,, -Description,,,,,,,,,, -Chemistry,Default,,,,,,,,, -,,,,,,,,,, -[Reads],,,,,,,,,, -150,,,,,,,,,, -150,,,,,,,,,, -,,,,,,,,,, -[Settings],,,,,,,,,, -ReverseComplement,0,,,,,,,,, -,,,,,,,,,, -[Data],,,,,,,,,, -Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description -1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 -1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 -1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 -1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL_Salmonella_Typhi_MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-146 -1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL_Salmonella_Typhi_MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-147 -1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL_Salmonella_Typhi_MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-148 -1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL_Salmonella_Typhi_MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-149 -1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL_Salmonella_Typhi_MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-150 -1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL_Salmonella_Typhi_MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-151 -1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL_Salmonella_Typhi_MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-152 -1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL_Salmonella_Typhi_MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-153 -1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL_Salmonella_Typhi_MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-154 -1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL_Salmonella_Typhi_MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-155 -1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL_Salmonella_Typhi_MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-156 -1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL_Salmonella_Typhi_MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-157 -1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL_Salmonella_Typhi_MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-158 -1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL_Salmonella_Typhi_MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-159 -1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL_Salmonella_Typhi_MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-160 -1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL_Salmonella_Typhi_MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-161 -1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL_Salmonella_Typhi_MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-162 -1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL_Salmonella_Typhi_MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-163 -1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL_Salmonella_Typhi_MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-164 -1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL_Salmonella_Typhi_MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-165 -1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL_Salmonella_Typhi_MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-166 -1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL_Salmonella_Typhi_MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-167 -1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL_Salmonella_Typhi_MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-168 -1,P21_E_coli_ELI344,P21_E_coli_ELI344,Feist_11661_P40,E7,iTru7_109_09,AGTCGCTT,iTru5_03_C,CACAGGAA,Feist_11661,P21_E. coli_ELI344 -1,P21_E_coli_ELI345,P21_E_coli_ELI345,Feist_11661_P40,G7,iTru7_109_10,TGGCACTA,iTru5_04_C,CCATGAAC,Feist_11661,P21_E. coli_ELI345 -1,P21_E_coli_ELI347,P21_E_coli_ELI347,Feist_11661_P40,I7,iTru7_109_11,GGTTGTCA,iTru5_05_C,GCCAATAC,Feist_11661,P21_E. coli_ELI347 -1,P21_E_coli_ELI348,P21_E_coli_ELI348,Feist_11661_P40,K7,iTru7_109_12,AACCTCCT,iTru5_06_C,AGCTACCA,Feist_11661,P21_E. coli_ELI348 -1,P21_E_coli_ELI349,P21_E_coli_ELI349,Feist_11661_P40,M7,iTru7_110_01,ATGACCAG,iTru5_07_C,AACCGAAC,Feist_11661,P21_E. coli_ELI349 -1,P21_E_coli_ELI350,P21_E_coli_ELI350,Feist_11661_P40_diluted,O7,iTru7_110_02,AACCGTTC,iTru5_08_C,ATCGCAAC,Feist_11661,P21_E. coli_ELI350 -1,P21_E_coli_ELI351,P21_E_coli_ELI351,Feist_11661_P40,A9,iTru7_110_03,TCCAATCG,iTru5_09_C,GTTGCTGT,Feist_11661,P21_E. coli_ELI351 -1,P21_E_coli_ELI352,P21_E_coli_ELI352,Feist_11661_P40,C9,iTru7_110_04,CTGCACTT,iTru5_10_C,TCTAGTCC,Feist_11661,P21_E. coli_ELI352 -1,P21_E_coli_ELI353,P21_E_coli_ELI353,Feist_11661_P40,E9,iTru7_110_05,CGCTTAAC,iTru5_11_C,GACGAACT,Feist_11661,P21_E. coli_ELI353 -1,P21_E_coli_ELI354,P21_E_coli_ELI354,Feist_11661_P40,G9,iTru7_110_06,CACCACTA,iTru5_12_C,TTCGTACG,Feist_11661,P21_E. coli_ELI354 -1,P21_E_coli_ELI355,P21_E_coli_ELI355,Feist_11661_P40,I9,iTru7_110_07,ACAGCAAC,iTru5_01_D,CGACACTT,Feist_11661,P21_E. coli_ELI355 -1,P21_E_coli_ELI357,P21_E_coli_ELI357,Feist_11661_P40,K9,iTru7_110_08,GGAAGGAT,iTru5_02_D,AGACGCTA,Feist_11661,P21_E. coli_ELI357 -1,P21_E_coli_ELI358,P21_E_coli_ELI358,Feist_11661_P40_diluted,M9,iTru7_110_09,GGCGTTAT,iTru5_03_D,TGACAACC,Feist_11661,P21_E. coli_ELI358 -1,P21_E_coli_ELI359,P21_E_coli_ELI359,Feist_11661_P40,O9,iTru7_110_10,CTGTTGAC,iTru5_04_D,GGTACTTC,Feist_11661,P21_E. coli_ELI359 -1,P21_E_coli_ELI361,P21_E_coli_ELI361,Feist_11661_P40_diluted,A11,iTru7_110_11,GTCATCGA,iTru5_05_D,CTGTATGC,Feist_11661,P21_E. coli_ELI361 -1,P21_E_coli_ELI362,P21_E_coli_ELI362,Feist_11661_P40,C11,iTru7_110_12,TGACTTCG,iTru5_06_D,TCGACAAG,Feist_11661,P21_E. coli_ELI362 -1,P21_E_coli_ELI363,P21_E_coli_ELI363,Feist_11661_P40_diluted,E11,iTru7_111_01,CGATAGAG,iTru5_07_D,GCTGAATC,Feist_11661,P21_E. coli_ELI363 -1,P21_E_coli_ELI364,P21_E_coli_ELI364,Feist_11661_P40,G11,iTru7_111_02,TTCGTTGG,iTru5_08_D,AGTTGTGC,Feist_11661,P21_E. coli_ELI364 -1,P21_E_coli_ELI365,P21_E_coli_ELI365,Feist_11661_P40,I11,iTru7_111_03,TGGAGAGT,iTru5_09_D,TGTCGACT,Feist_11661,P21_E. coli_ELI365 -1,P21_E_coli_ELI366,P21_E_coli_ELI366,Feist_11661_P40_diluted,K11,iTru7_111_04,TCAGACGA,iTru5_10_D,AAGGCTCT,Feist_11661,P21_E. coli_ELI366 -1,P21_E_coli_ELI367,P21_E_coli_ELI367,Feist_11661_P40_diluted,M11,iTru7_111_05,GACGAATG,iTru5_11_D,CCTAACAG,Feist_11661,P21_E. coli_ELI367 -1,P21_E_coli_ELI368,P21_E_coli_ELI368,Feist_11661_P40,O11,iTru7_111_06,CATGAGGA,iTru5_12_D,AAGACGAG,Feist_11661,P21_E. coli_ELI368 -1,P21_E_coli_ELI369,P21_E_coli_ELI369,Feist_11661_P40,A13,iTru7_111_07,CGGTTGTT,iTru5_01_E,GACTTGTG,Feist_11661,P21_E. coli_ELI369 -1,stALE_E_coli_A1_F21_I1_R1,stALE_E_coli_A1_F21_I1_R1,Feist_11661_P40,C13,iTru7_111_08,TCCGTATG,iTru5_02_E,CAACTCCA,Feist_11661,stALE_E. coli_A1.F21.I1.R1 -1,stALE_E_coli_A2_F21_I1_R1,stALE_E_coli_A2_F21_I1_R1,Feist_11661_P40,E13,iTru7_111_09,TGTGGTAC,iTru5_03_E,TGTTCCGT,Feist_11661,stALE_E. coli_A2.F21.I1.R1 -1,stALE_E_coli_A3_F18_I1_R1,stALE_E_coli_A3_F18_I1_R1,Feist_11661_P40,G13,iTru7_111_10,AGAACGAG,iTru5_04_E,ACCGCTAT,Feist_11661,stALE_E. coli_A3.F18.I1.R1 -1,stALE_E_coli_A3_F40_I1_R1,stALE_E_coli_A3_F40_I1_R1,Feist_11661_P40,I13,iTru7_111_11,CTTCGTTC,iTru5_05_E,CTTAGGAC,Feist_11661,stALE_E. coli_A3.F40.I1.R1 -1,stALE_E_coli_A4_F21_I1_R1,stALE_E_coli_A4_F21_I1_R1,Feist_11661_P40,K13,iTru7_111_12,CCAATAGG,iTru5_06_E,TATGACCG,Feist_11661,stALE_E. coli_A4.F21.I1.R1 -1,stALE_E_coli_A4_F21_I1_R2,stALE_E_coli_A4_F21_I1_R2,Feist_11661_P40,M13,iTru7_112_01,ACCATCCA,iTru5_07_E,AGCTAGTG,Feist_11661,stALE_E. coli_A4.F21.I1.R2 -1,stALE_E_coli_A4_F42_I1_R1,stALE_E_coli_A4_F42_I1_R1,Feist_11661_P40,O13,iTru7_112_02,CACACATG,iTru5_08_E,GAACGAAG,Feist_11661,stALE_E. coli_A4.F42.I1.R1 -1,stALE_E_coli_A5_F21_I1_R1,stALE_E_coli_A5_F21_I1_R1,Feist_11661_P40,A15,iTru7_112_03,CTTGTCGA,iTru5_09_E,CGTCTAAC,Feist_11661,stALE_E. coli_A5.F21.I1.R1 -1,stALE_E_coli_A5_F42_I1_R1,stALE_E_coli_A5_F42_I1_R1,Feist_11661_P40,C15,iTru7_112_04,AGTCTCAC,iTru5_10_E,AACCAGAG,Feist_11661,stALE_E. coli_A5.F42.I1.R1 -1,stALE_E_coli_A6_F21_I1_R1,stALE_E_coli_A6_F21_I1_R1,Feist_11661_P40,E15,iTru7_112_05,AGTTGGCT,iTru5_11_E,CGCCTTAT,Feist_11661,stALE_E. coli_A6.F21.I1.R1 -1,stALE_E_coli_A6_F43_I1_R1,stALE_E_coli_A6_F43_I1_R1,Feist_11661_P40,G15,iTru7_112_06,CCGGAATT,iTru5_12_E,CTCGTTCT,Feist_11661,stALE_E. coli_A6.F43.I1.R1 -1,stALE_E_coli_A7_F21_I1_R1,stALE_E_coli_A7_F21_I1_R1,Feist_11661_P40,I15,iTru7_112_07,CAGTGAAG,iTru5_01_F,GTGAGACT,Feist_11661,stALE_E. coli_A7.F21.I1.R1 -1,stALE_E_coli_A7_F42_I1_R1,stALE_E_coli_A7_F42_I1_R1,Feist_11661_P40,K15,iTru7_112_08,CCTACTGA,iTru5_02_F,AACACGCT,Feist_11661,stALE_E. coli_A7.F42.I1.R1 -1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 -1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 -1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 -1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 -1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 -1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 -1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 -1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 -1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 -1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 -1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 -1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 -1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 -1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 -1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 -1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 -1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 -1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 -1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 -1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 -1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 -1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 -1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 -1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 -1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 -1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 -1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 -1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 -1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 -1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 -1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick_6123,3A -1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick_6123,4A -1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G -1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H -1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 -1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 -1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 -1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 -1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 -1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 -1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 -1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 -1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 -1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 -1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 -1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 -1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 -1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 -1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 -1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 -1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 -1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 -1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 -1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 -1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 -1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 -1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 -1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 -1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 -1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 -1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 -1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 -1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 -1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 -1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 -1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 -1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 -1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 -1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 -1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 -1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 -1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 -1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 -1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 -1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 -1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 -1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 -1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 -1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 -1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 -1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 -1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 -1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 -1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 -1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 -1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 -1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 -1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 -1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 -1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 -1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 -1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 -1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 -1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 -1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 -1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 -1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 -1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 -1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 -1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 -1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 -1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 -1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 -1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 -1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 -1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 -1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 -1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 -1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 -1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 -1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 -1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 -1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 -1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 -1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 -1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 -1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 -1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 -1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 -1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 -1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 -1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 -1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 -1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 -1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 -1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 -1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,5B -1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,6A -1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,BLANK.41.12G -1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 -1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 -1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 -1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 -1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 -1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 -1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 -1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 -1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 -1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 -1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 -1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 -1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 -1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 -1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 -1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 -1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 -1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 -1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 -1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 -1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 -1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 -1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 -1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 -1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 -1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 -1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 -1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 -1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 -1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 -1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 -1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 -1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 -1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 -1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,7A -1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,8A -1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G -1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 -1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 -1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 -1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 -1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 -1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 -1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 -1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,ISB -1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,GFR -1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G -1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H -1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D -1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L -1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N -1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E -1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 -1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 -1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 -1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 -1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 -1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 -1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 -1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR -1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR -1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR -1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS -1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A -1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B -1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C -1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D -1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E -1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F -1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G -1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H -1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 -1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 -1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 -1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 -1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 -1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 -1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 -1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 -1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 -1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 -1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 -1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 -1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 -1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 -1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 -1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 -1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 -1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 -1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 -1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 -1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 -1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 -1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 -1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 -1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 -1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 -1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 -1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 -1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 -1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 -1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 -1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 -1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 -1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 -1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 -1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 -1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 -1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 -1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 -1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 -1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 -1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 -1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 -1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 -1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 -1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 -1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 -1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 -1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 -1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 -1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 -1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 -1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 -1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 -1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 -1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 -1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 -1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 -1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 -1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 -1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 -1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 -1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 -1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 -1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 -1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 -1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 -1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 -1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 -1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 -1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 -1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 -1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 -1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 -1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 -1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 -1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 -1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 -1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 -1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 -1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 -1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 -1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 -1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 -1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 -1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 -1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 -1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 -1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 -1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 -1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 -1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 -1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 -1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 -1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 -1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 -1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A -1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B -1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C -1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D -1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E -1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F -1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G -1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H -1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 -1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 -1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 -1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 -1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 -1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 -1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 -1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 -1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 -1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 -1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 -1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 -1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 -1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 -1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 -1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 -1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 -1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 -1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 -1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 -1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 -1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 -1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 -1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 -1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 -1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 -1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 -1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 -1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 -1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 -1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 -1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 -1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 -1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 -1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 -1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 -1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 -1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 -1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 -1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 -1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 -1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 -1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 -1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 -1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 -1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 -1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 -1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 -1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 -1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 -1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 -1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 -1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 -1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 -1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 -1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 -1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 -1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 -1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 -1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 -1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 -1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 -1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 -1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 -1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 -1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 -1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 -1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 -1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 -1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 -1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 -1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 -1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 -1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 -1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 -1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 -1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 -1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 -1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 -1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 -1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 -1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 -1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 -1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 -1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 -1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 -1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 -1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 -1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 -1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 -1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 -1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 -1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 -1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 -1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 -1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 -1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A -1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B -1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C -1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D -1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E -1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F -1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G -1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H -1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 -1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 -1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 -1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 -1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 -1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 -1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 -1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 -1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 -1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 -1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 -1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 -1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 -1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 -1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 -1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 -1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 -1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 -1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 -1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 -1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 -1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 -1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 -1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 -1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 -1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 -1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 -1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 -1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 -1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 -1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 -1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 -1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 -1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 -1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 -1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 -1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 -1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 -1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 -1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 -1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 -1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 -1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 -1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 -1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 -1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 -1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 -1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 -1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 -1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 -1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 -1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 -1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 -1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 -1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 -1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 -1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 -1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 -1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 -1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 -1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 -1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 -1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 -1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 -1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 -1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 -1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 -1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 -1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 -1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 -1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 -1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 -1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 -1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 -1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 -1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 -1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 -1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 -1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 -1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 -1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 -1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 -1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 -1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 -1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 -1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 -1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 -1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 -1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 -1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 -1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 -1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 -1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 -1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 -1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 -1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 -1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A -1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B -1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C -1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D -1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E -1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F -1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G -1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H -1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 -1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 -1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 -1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 -1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 -1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 -1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 -1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 -1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 -1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 -1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 -1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 -1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 -1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 -1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 -1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 -1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 -1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 -1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 -1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 -1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 -1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 -1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 -1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 -1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 -1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 -1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 -1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 -1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 -1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 -1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 -1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 -1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 -1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 -1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 -1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 -1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 -1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 -1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 -1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 -1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 -1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 -1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 -1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 -1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 -1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 -1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 -1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 -1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 -1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 -1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 -1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 -1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 -1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 -1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 -1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 -1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 -1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 -1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 -1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 -1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 -1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 -1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 -1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 -,,,,,,,,,, -[Bioinformatics],,,,,,,,,, -Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, -NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,, -Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,, -Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,, -,,,,,,,,,, -[Contact],,,,,,,,,, -Email,Sample_Project,,,,,,,,, -test@lol.com,Feist_11661,,,,,,,,, -,,,,,,,,,, +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +Investigator Name,Knight,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,, +Date,2020-02-26,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Metagenomic,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL_Salmonella_Typhi_MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL_Salmonella_Typhi_MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL_Salmonella_Typhi_MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL_Salmonella_Typhi_MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL_Salmonella_Typhi_MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL_Salmonella_Typhi_MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL_Salmonella_Typhi_MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL_Salmonella_Typhi_MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-153 +1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL_Salmonella_Typhi_MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-154 +1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL_Salmonella_Typhi_MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-155 +1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL_Salmonella_Typhi_MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-156 +1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL_Salmonella_Typhi_MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-157 +1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL_Salmonella_Typhi_MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-158 +1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL_Salmonella_Typhi_MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-159 +1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL_Salmonella_Typhi_MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-160 +1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL_Salmonella_Typhi_MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-161 +1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL_Salmonella_Typhi_MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-162 +1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL_Salmonella_Typhi_MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-163 +1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL_Salmonella_Typhi_MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-164 +1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL_Salmonella_Typhi_MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-165 +1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL_Salmonella_Typhi_MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-166 +1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL_Salmonella_Typhi_MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-167 +1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL_Salmonella_Typhi_MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-168 +1,P21_E_coli_ELI344,P21_E_coli_ELI344,Feist_11661_P40,E7,iTru7_109_09,AGTCGCTT,iTru5_03_C,CACAGGAA,Feist_11661,P21_E. coli_ELI344 +1,P21_E_coli_ELI345,P21_E_coli_ELI345,Feist_11661_P40,G7,iTru7_109_10,TGGCACTA,iTru5_04_C,CCATGAAC,Feist_11661,P21_E. coli_ELI345 +1,P21_E_coli_ELI347,P21_E_coli_ELI347,Feist_11661_P40,I7,iTru7_109_11,GGTTGTCA,iTru5_05_C,GCCAATAC,Feist_11661,P21_E. coli_ELI347 +1,P21_E_coli_ELI348,P21_E_coli_ELI348,Feist_11661_P40,K7,iTru7_109_12,AACCTCCT,iTru5_06_C,AGCTACCA,Feist_11661,P21_E. coli_ELI348 +1,P21_E_coli_ELI349,P21_E_coli_ELI349,Feist_11661_P40,M7,iTru7_110_01,ATGACCAG,iTru5_07_C,AACCGAAC,Feist_11661,P21_E. coli_ELI349 +1,P21_E_coli_ELI350,P21_E_coli_ELI350,Feist_11661_P40_diluted,O7,iTru7_110_02,AACCGTTC,iTru5_08_C,ATCGCAAC,Feist_11661,P21_E. coli_ELI350 +1,P21_E_coli_ELI351,P21_E_coli_ELI351,Feist_11661_P40,A9,iTru7_110_03,TCCAATCG,iTru5_09_C,GTTGCTGT,Feist_11661,P21_E. coli_ELI351 +1,P21_E_coli_ELI352,P21_E_coli_ELI352,Feist_11661_P40,C9,iTru7_110_04,CTGCACTT,iTru5_10_C,TCTAGTCC,Feist_11661,P21_E. coli_ELI352 +1,P21_E_coli_ELI353,P21_E_coli_ELI353,Feist_11661_P40,E9,iTru7_110_05,CGCTTAAC,iTru5_11_C,GACGAACT,Feist_11661,P21_E. coli_ELI353 +1,P21_E_coli_ELI354,P21_E_coli_ELI354,Feist_11661_P40,G9,iTru7_110_06,CACCACTA,iTru5_12_C,TTCGTACG,Feist_11661,P21_E. coli_ELI354 +1,P21_E_coli_ELI355,P21_E_coli_ELI355,Feist_11661_P40,I9,iTru7_110_07,ACAGCAAC,iTru5_01_D,CGACACTT,Feist_11661,P21_E. coli_ELI355 +1,P21_E_coli_ELI357,P21_E_coli_ELI357,Feist_11661_P40,K9,iTru7_110_08,GGAAGGAT,iTru5_02_D,AGACGCTA,Feist_11661,P21_E. coli_ELI357 +1,P21_E_coli_ELI358,P21_E_coli_ELI358,Feist_11661_P40_diluted,M9,iTru7_110_09,GGCGTTAT,iTru5_03_D,TGACAACC,Feist_11661,P21_E. coli_ELI358 +1,P21_E_coli_ELI359,P21_E_coli_ELI359,Feist_11661_P40,O9,iTru7_110_10,CTGTTGAC,iTru5_04_D,GGTACTTC,Feist_11661,P21_E. coli_ELI359 +1,P21_E_coli_ELI361,P21_E_coli_ELI361,Feist_11661_P40_diluted,A11,iTru7_110_11,GTCATCGA,iTru5_05_D,CTGTATGC,Feist_11661,P21_E. coli_ELI361 +1,P21_E_coli_ELI362,P21_E_coli_ELI362,Feist_11661_P40,C11,iTru7_110_12,TGACTTCG,iTru5_06_D,TCGACAAG,Feist_11661,P21_E. coli_ELI362 +1,P21_E_coli_ELI363,P21_E_coli_ELI363,Feist_11661_P40_diluted,E11,iTru7_111_01,CGATAGAG,iTru5_07_D,GCTGAATC,Feist_11661,P21_E. coli_ELI363 +1,P21_E_coli_ELI364,P21_E_coli_ELI364,Feist_11661_P40,G11,iTru7_111_02,TTCGTTGG,iTru5_08_D,AGTTGTGC,Feist_11661,P21_E. coli_ELI364 +1,P21_E_coli_ELI365,P21_E_coli_ELI365,Feist_11661_P40,I11,iTru7_111_03,TGGAGAGT,iTru5_09_D,TGTCGACT,Feist_11661,P21_E. coli_ELI365 +1,P21_E_coli_ELI366,P21_E_coli_ELI366,Feist_11661_P40_diluted,K11,iTru7_111_04,TCAGACGA,iTru5_10_D,AAGGCTCT,Feist_11661,P21_E. coli_ELI366 +1,P21_E_coli_ELI367,P21_E_coli_ELI367,Feist_11661_P40_diluted,M11,iTru7_111_05,GACGAATG,iTru5_11_D,CCTAACAG,Feist_11661,P21_E. coli_ELI367 +1,P21_E_coli_ELI368,P21_E_coli_ELI368,Feist_11661_P40,O11,iTru7_111_06,CATGAGGA,iTru5_12_D,AAGACGAG,Feist_11661,P21_E. coli_ELI368 +1,P21_E_coli_ELI369,P21_E_coli_ELI369,Feist_11661_P40,A13,iTru7_111_07,CGGTTGTT,iTru5_01_E,GACTTGTG,Feist_11661,P21_E. coli_ELI369 +1,stALE_E_coli_A1_F21_I1_R1,stALE_E_coli_A1_F21_I1_R1,Feist_11661_P40,C13,iTru7_111_08,TCCGTATG,iTru5_02_E,CAACTCCA,Feist_11661,stALE_E. coli_A1.F21.I1.R1 +1,stALE_E_coli_A2_F21_I1_R1,stALE_E_coli_A2_F21_I1_R1,Feist_11661_P40,E13,iTru7_111_09,TGTGGTAC,iTru5_03_E,TGTTCCGT,Feist_11661,stALE_E. coli_A2.F21.I1.R1 +1,stALE_E_coli_A3_F18_I1_R1,stALE_E_coli_A3_F18_I1_R1,Feist_11661_P40,G13,iTru7_111_10,AGAACGAG,iTru5_04_E,ACCGCTAT,Feist_11661,stALE_E. coli_A3.F18.I1.R1 +1,stALE_E_coli_A3_F40_I1_R1,stALE_E_coli_A3_F40_I1_R1,Feist_11661_P40,I13,iTru7_111_11,CTTCGTTC,iTru5_05_E,CTTAGGAC,Feist_11661,stALE_E. coli_A3.F40.I1.R1 +1,stALE_E_coli_A4_F21_I1_R1,stALE_E_coli_A4_F21_I1_R1,Feist_11661_P40,K13,iTru7_111_12,CCAATAGG,iTru5_06_E,TATGACCG,Feist_11661,stALE_E. coli_A4.F21.I1.R1 +1,stALE_E_coli_A4_F21_I1_R2,stALE_E_coli_A4_F21_I1_R2,Feist_11661_P40,M13,iTru7_112_01,ACCATCCA,iTru5_07_E,AGCTAGTG,Feist_11661,stALE_E. coli_A4.F21.I1.R2 +1,stALE_E_coli_A4_F42_I1_R1,stALE_E_coli_A4_F42_I1_R1,Feist_11661_P40,O13,iTru7_112_02,CACACATG,iTru5_08_E,GAACGAAG,Feist_11661,stALE_E. coli_A4.F42.I1.R1 +1,stALE_E_coli_A5_F21_I1_R1,stALE_E_coli_A5_F21_I1_R1,Feist_11661_P40,A15,iTru7_112_03,CTTGTCGA,iTru5_09_E,CGTCTAAC,Feist_11661,stALE_E. coli_A5.F21.I1.R1 +1,stALE_E_coli_A5_F42_I1_R1,stALE_E_coli_A5_F42_I1_R1,Feist_11661_P40,C15,iTru7_112_04,AGTCTCAC,iTru5_10_E,AACCAGAG,Feist_11661,stALE_E. coli_A5.F42.I1.R1 +1,stALE_E_coli_A6_F21_I1_R1,stALE_E_coli_A6_F21_I1_R1,Feist_11661_P40,E15,iTru7_112_05,AGTTGGCT,iTru5_11_E,CGCCTTAT,Feist_11661,stALE_E. coli_A6.F21.I1.R1 +1,stALE_E_coli_A6_F43_I1_R1,stALE_E_coli_A6_F43_I1_R1,Feist_11661_P40,G15,iTru7_112_06,CCGGAATT,iTru5_12_E,CTCGTTCT,Feist_11661,stALE_E. coli_A6.F43.I1.R1 +1,stALE_E_coli_A7_F21_I1_R1,stALE_E_coli_A7_F21_I1_R1,Feist_11661_P40,I15,iTru7_112_07,CAGTGAAG,iTru5_01_F,GTGAGACT,Feist_11661,stALE_E. coli_A7.F21.I1.R1 +1,stALE_E_coli_A7_F42_I1_R1,stALE_E_coli_A7_F42_I1_R1,Feist_11661_P40,K15,iTru7_112_08,CCTACTGA,iTru5_02_F,AACACGCT,Feist_11661,stALE_E. coli_A7.F42.I1.R1 +1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 +1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 +1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 +1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 +1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 +1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 +1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 +1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 +1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 +1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 +1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 +1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 +1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 +1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 +1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 +1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 +1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 +1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 +1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 +1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 +1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 +1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 +1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 +1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 +1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 +1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 +1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 +1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 +1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 +1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 +1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick_6123,3A +1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick_6123,4A +1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G +1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H +1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 +1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 +1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 +1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 +1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 +1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 +1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 +1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 +1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 +1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 +1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 +1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 +1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 +1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 +1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 +1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 +1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 +1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 +1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 +1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 +1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 +1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 +1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 +1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 +1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 +1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 +1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 +1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 +1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 +1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 +1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 +1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 +1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 +1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 +1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 +1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 +1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 +1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 +1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 +1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 +1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 +1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 +1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 +1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 +1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 +1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 +1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 +1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 +1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 +1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 +1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,6A +1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,BLANK.41.12G +1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,8A +1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G +1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,GFR +1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G +1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A +1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B +1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C +1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D +1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E +1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F +1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G +1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 +1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A +1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B +1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C +1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D +1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E +1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F +1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G +1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 +1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A +1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B +1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C +1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D +1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E +1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F +1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G +1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 +1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 +1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 +1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A +1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B +1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C +1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D +1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E +1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F +1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G +1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 +,,,,,,,,,, +[Bioinformatics],,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,, +,,,,,,,,,, +[Contact],,,,,,,,,, +Email,Sample_Project,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,, +,,,,,,,,,, diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index cb12caec..3a353c6b 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -13,6 +13,7 @@ from os import makedirs, chmod from shutil import rmtree from os import environ, remove +from json import dumps class BaseStepTests(TestCase): @@ -86,6 +87,7 @@ def setUp(self): self.good_config_file = join(package_root, 'configuration.json') self.good_run_id = '211021_A00000_0000_SAMPLE' self.good_sample_sheet_path = cc_path('good-sample-sheet.csv') + self.good_mapping_file_path = cc_path('good-mapping-file.txt') self.output_file_path = cc_path('output_dir') self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) @@ -246,26 +248,41 @@ def test_quality_control(self): step = Step(self.pipeline, self.qiita_id, sn_tid_map_by_project, None) step._quality_control(self.config['qc'], self.good_sample_sheet_path) - def test_generate_reports(self): - pass + def test_generate_pipeline(self): + tmp = join('.', 'tmp.config') + with open(tmp, 'w') as f: + f.write(dumps(BaseStepTests.CONFIGURATION, indent=2)) + + pipeline = Step.generate_pipeline('metagenomic', + self.good_sample_sheet_path, + 1, + tmp, + self.good_run_id, + self.output_file_path, + self.qiita_id) + + self.assertIsNotNone(pipeline) - def test_generate_prep_file(self): - pass + pipeline = Step.generate_pipeline('amplicon', + self.good_mapping_file_path, + 1, + tmp, + self.good_run_id, + self.output_file_path, + self.qiita_id) - def test_generate_commands(self): - pass + self.assertIsNotNone(pipeline) - def test_write_commands_to_output_path(self): - pass + remove(tmp) - def test_execute_commands(self): - pass + def test_get_project_info(self): + obs = self.pipeline.get_project_info() - def test_generate_sifs(self): - pass + exp = [{'project_name': 'NYU_BMS_Melanoma_13059', 'qiita_id': '13059'}, + {'project_name': 'Feist_11661', 'qiita_id': '11661'}, + {'project_name': 'Gerwick_6123', 'qiita_id': '6123'}] - def test_get_prep_file_paths(self): - pass + self.assertEqual(obs, exp) def test_parse_prep_file(self): good_prep_file = join('qp_klp', 'tests', 'good-prep-file-small.txt') From f3779cdbbd1bed411705f3c88b8d4cc23d13cbb7 Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 15:27:25 -0700 Subject: [PATCH 31/35] Updates based on feedback --- qp_klp/Amplicon.py | 20 ++++++++++---------- qp_klp/Metagenomic.py | 6 +++--- qp_klp/Step.py | 21 ++++++++++++++------- qp_klp/klp.py | 26 ++++++++++++++++++++++---- qp_klp/tests/test_amplicon_step.py | 6 +++--- qp_klp/tests/test_metagenomic_step.py | 18 ++++++++++++++++++ qp_klp/tests/test_step.py | 19 ++++++++++++++++--- 7 files changed, 86 insertions(+), 30 deletions(-) diff --git a/qp_klp/Amplicon.py b/qp_klp/Amplicon.py index 58ccf466..45d43fb7 100644 --- a/qp_klp/Amplicon.py +++ b/qp_klp/Amplicon.py @@ -12,7 +12,7 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) - if pipeline.pipeline_type != 'amplicon': + if pipeline.pipeline_type != Step.AMPLICON_TYPE: raise ValueError("Cannot create an Amplicon run using a " f"{pipeline.pipeline_type}-configured Pipeline.") @@ -38,12 +38,12 @@ def quality_control(self): for project_name in projects: # copy the files from ConvertJob output to faked QCJob output # folder: $WKDIR/$RUN_ID/QCJob/$PROJ_NAME/amplicon - faked_output_folder = join(self.pipeline.output_path, - 'QCJob', - project_name, - 'amplicon') + output_folder = join(self.pipeline.output_path, + 'QCJob', + project_name, + Step.AMPLICON_TYPE) - makedirs(faked_output_folder) + makedirs(output_folder) raw_fastq_files_path = join(self.pipeline.output_path, 'ConvertJob') @@ -60,7 +60,7 @@ def quality_control(self): # copy the file for fastq_file in job_output: - new_path = join(faked_output_folder, basename(fastq_file)) + new_path = join(output_folder, basename(fastq_file)) copyfile(fastq_file, new_path) # FastQC expects the ConvertJob output to also be organized by @@ -69,8 +69,8 @@ def quality_control(self): # the dummy sample-sheet, we instead perform ConvertJob once # and copy the output from ConvertJob's output folder into # ConvertJob's output folder/project1, project2 ... projectN. - faked_output_folder = join(raw_fastq_files_path, project_name) - makedirs(faked_output_folder) + output_folder = join(raw_fastq_files_path, project_name) + makedirs(output_folder) job_output = [join(raw_fastq_files_path, x) for x in listdir(raw_fastq_files_path)] job_output = [x for x in job_output if isfile(x)] @@ -79,7 +79,7 @@ def quality_control(self): not basename(x).startswith('Undetermined')] for raw_fastq_file in job_output: - new_path = join(faked_output_folder, basename(raw_fastq_file)) + new_path = join(output_folder, basename(raw_fastq_file)) copyfile(raw_fastq_file, new_path) def generate_reports(self, input_file_path): diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index 662f7e97..a9706b94 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -13,7 +13,7 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, sn_tid_map_by_project, status_update_callback) - if pipeline.pipeline_type != 'metagenomic': + if pipeline.pipeline_type not in Step.META_TYPES: raise ValueError("Cannot instantiate Metagenomic object from " f"pipeline of type '{pipeline.pipeline_type}'") @@ -26,7 +26,7 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, def convert_bcl_to_fastq(self): # The 'bcl-convert' key is a convention hard-coded into mg-scripts and - # qp-klp projects. Currently metagenomic jobs use bcl-convert for its + # qp-klp projects. Currently meta*omic jobs use bcl-convert for its # improved performance over bcl2fastq. The name and path of the # executable, the resource requirements to instantiate a SLURM job # with, etc. are stored in configuration['bcl-convert'']. @@ -103,7 +103,7 @@ def generate_commands(self, special_map, server_url, # review upon completion. touched_studies.append((qiita_id, project)) - if self.pipeline.pipeline_type == 'metagenomic': + if self.pipeline.pipeline_type in Step.META_TYPES: self.cmds.append(f'cd {out_dir}; tar zcvf reports-QCJob.tgz ' f'QCJob/{project}/fastp_reports_dir') diff --git a/qp_klp/Step.py b/qp_klp/Step.py index 2ce00396..bd8257a8 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -63,9 +63,15 @@ class Step: subclass and makes calls to this base class as needed. In this way the codebase is kept DRY. ''' + + AMPLICON_TYPE = 'amplicon' + METAGENOMIC_TYPE = 'metagenomic' + METATRANSCRIPTOMIC_TYPE = 'metatranscriptomic' + META_TYPES = [METAGENOMIC_TYPE, METATRANSCRIPTOMIC_TYPE] + ALL_TYPES = META_TYPES + [AMPLICON_TYPE] + def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, status_update_callback=None): - if pipeline is None: raise ValueError("A pipeline object is needed to initialize Step") @@ -98,11 +104,11 @@ def __init__(self, pipeline, master_qiita_job_id, sn_tid_map_by_project, def generate_pipeline(cls, pipeline_type, input_file_path, lane_number, config_fp, run_identifier, out_dir, job_id): - if pipeline_type in ['metagenomic', 'metatranscriptomic']: + if pipeline_type in Step.META_TYPES: cls.update_sample_sheet(input_file_path, lane_number) return Pipeline(config_fp, run_identifier, input_file_path, None, out_dir, job_id, pipeline_type) - elif pipeline_type == 'amplicon': + elif pipeline_type == Step.AMPLICON_TYPE: return Pipeline(config_fp, run_identifier, None, input_file_path, out_dir, job_id, pipeline_type) else: @@ -169,9 +175,9 @@ def update_prep_templates(cls, qclient, prep_file_paths, pipeline_type): data = {'prep_info': dumps(metadata), 'study': study_id, 'data_type': None} - if pipeline_type in ['metagenomic', 'metatranscriptomic']: + if pipeline_type in Step.META_TYPES: data['data_type'] = pipeline_type - elif pipeline_type == 'amplicon': + elif pipeline_type == Step.AMPLICON_TYPE: if 'target_gene' in metadata[list(metadata.keys())[0]]: tg = metadata[list(metadata.keys())[0]]['target_gene'] for key in {'16S', '18S', 'ITS'}: @@ -257,6 +263,7 @@ def _quality_control(self, config, input_file_path): def _generate_reports(self, input_file_path): config = self.pipeline.configuration['fastqc'] + is_amplicon = self.pipeline.pipeline_type == Step.AMPLICON_TYPE fastqc_job = FastQCJob(self.pipeline.run_dir, self.pipeline.output_path, join(self.pipeline.output_path, 'ConvertJob'), @@ -273,7 +280,7 @@ def _generate_reports(self, input_file_path): self.job_pool_size, config['multiqc_config_file_path'], config['job_max_array_length'], - self.pipeline.pipeline_type == 'amplicon') + is_amplicon) fastqc_job.run(callback=self.update_callback) @@ -281,7 +288,7 @@ def _generate_reports(self, input_file_path): def _generate_prep_file(self, config, input_file_path, seqpro_path, project_names): - is_amplicon = self.pipeline.pipeline_type == 'amplicon' + is_amplicon = self.pipeline.pipeline_type == Step.AMPLICON_TYPE gpf_job = GenPrepFileJob( self.pipeline.run_dir, diff --git a/qp_klp/klp.py b/qp_klp/klp.py index 86858c53..9ee0ec82 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -96,12 +96,30 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): if Pipeline.is_sample_sheet(uif_path): # if file follows basic sample-sheet format, then it is most likely # a sample-sheet, even if it's an invalid one. - pipeline_type = 'metagenomic' + + # a valid sample-sheet is going to have one and only one occurance of + # 'Assay,Metagenomic' or 'Assay,Metatranscriptomic'. Anything else is + # an error. + + tmp = [x for x in user_input_file['body'] if 'Assay' in x] + + if len(tmp) != 1: + return False, None, ("Your uploaded file doesn't appear to be a" + "valid sample-sheet.") + + pipeline_type = None + for p_type in Step.META_TYPES: + if p_type in tmp[0].lower(): + pipeline_type = p_type + + if pipeline_type is None: + return False, None, ("Your uploaded file doesn't appear to be a" + "valid sample-sheet.") elif Pipeline.is_mapping_file(uif_path): # if file is readable as a basic TSV and contains all the required # headers, then treat this as a mapping file, even if it's an invalid # one. - pipeline_type = 'amplicon' + pipeline_type = Step.AMPLICON_TYPE lane_number = -1 else: # file doesn't look like a sample-sheet, or a valid mapping file. @@ -182,11 +200,11 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): qclient.get("/qiita_db/artifacts/types/"), pipeline.get_project_info()) - if pipeline.pipeline_type == 'metagenomic': + if pipeline.pipeline_type in Step.META_TYPES: step = Metagenomic(pipeline, job_id, sn_tid_map_by_project, status_line) else: - # pipeline.pipeline_type == 'amplicon': + # pipeline.pipeline_type == Step.AMPLICON_TYPE: step = Amplicon(pipeline, job_id, sn_tid_map_by_project, status_line) diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py index 03d6ec9f..4deb1cf8 100644 --- a/qp_klp/tests/test_amplicon_step.py +++ b/qp_klp/tests/test_amplicon_step.py @@ -35,7 +35,7 @@ def test_creation(self): self.good_mapping_file, self.output_file_path, self.qiita_id, - 'amplicon', + Amplicon.AMPLICON_TYPE, AmpliconTests.CONFIGURATION) with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " @@ -47,14 +47,14 @@ def test_creation(self): "needed to initialize Step"): Amplicon(amplicon_pipeline, self.qiita_id, None, None) - # create metagenomic pipeline for final test. + # create meta*omic pipeline for final test. metagenomic_pipeline = Pipeline(None, self.good_run_id, self.good_sample_sheet_path, None, self.output_file_path, self.qiita_id, - 'metagenomic', + Amplicon.METAGENOMIC_TYPE, AmpliconTests.CONFIGURATION) with self.assertRaisesRegex(ValueError, "Cannot create an Amplicon run" diff --git a/qp_klp/tests/test_metagenomic_step.py b/qp_klp/tests/test_metagenomic_step.py index 43f1b1bc..e68d0ec4 100644 --- a/qp_klp/tests/test_metagenomic_step.py +++ b/qp_klp/tests/test_metagenomic_step.py @@ -7,6 +7,8 @@ # ----------------------------------------------------------------------------- from qp_klp.tests.test_step import BaseStepTests from qp_klp.Metagenomic import Metagenomic +from sequence_processing_pipeline.Pipeline import Pipeline +from os import makedirs class MetagenomicTests(BaseStepTests): @@ -38,6 +40,22 @@ def test_creation(self): self.assertIsNotNone(step) + makedirs(self.output_file_path, exist_ok=True) + + trans_pipeline = Pipeline(None, + self.good_run_id, + self.good_transcript_sheet_path, + None, + self.output_file_path, + self.qiita_id, + Metagenomic.METATRANSCRIPTOMIC_TYPE, + BaseStepTests.CONFIGURATION) + + step = Metagenomic(trans_pipeline, self.qiita_id, + sn_tid_map_by_project, None) + + self.assertIsNotNone(step) + def test_convert_bcl_to_fastq(self): self._delete_test_output() self._create_test_input(1) diff --git a/qp_klp/tests/test_step.py b/qp_klp/tests/test_step.py index 3a353c6b..a4f0e3b9 100644 --- a/qp_klp/tests/test_step.py +++ b/qp_klp/tests/test_step.py @@ -88,6 +88,8 @@ def setUp(self): self.good_run_id = '211021_A00000_0000_SAMPLE' self.good_sample_sheet_path = cc_path('good-sample-sheet.csv') self.good_mapping_file_path = cc_path('good-mapping-file.txt') + self.good_transcript_sheet_path = cc_path('good-sample-sheet-' + 'transcriptomics.csv') self.output_file_path = cc_path('output_dir') self.qiita_id = '077c4da8-74eb-4184-8860-0207f53623be' makedirs(self.output_file_path, exist_ok=True) @@ -95,7 +97,8 @@ def setUp(self): self.pipeline = Pipeline(None, self.good_run_id, self.good_sample_sheet_path, None, self.output_file_path, self.qiita_id, - 'metagenomic', BaseStepTests.CONFIGURATION) + Step.METAGENOMIC_TYPE, + BaseStepTests.CONFIGURATION) self.config = BaseStepTests.CONFIGURATION['configuration'] @@ -253,7 +256,7 @@ def test_generate_pipeline(self): with open(tmp, 'w') as f: f.write(dumps(BaseStepTests.CONFIGURATION, indent=2)) - pipeline = Step.generate_pipeline('metagenomic', + pipeline = Step.generate_pipeline(Step.METAGENOMIC_TYPE, self.good_sample_sheet_path, 1, tmp, @@ -263,7 +266,7 @@ def test_generate_pipeline(self): self.assertIsNotNone(pipeline) - pipeline = Step.generate_pipeline('amplicon', + pipeline = Step.generate_pipeline(Step.AMPLICON_TYPE, self.good_mapping_file_path, 1, tmp, @@ -273,6 +276,16 @@ def test_generate_pipeline(self): self.assertIsNotNone(pipeline) + pipeline = Step.generate_pipeline(Step.METATRANSCRIPTOMIC_TYPE, + self.good_transcript_sheet_path, + 1, + tmp, + self.good_run_id, + self.output_file_path, + self.qiita_id) + + self.assertIsNotNone(pipeline) + remove(tmp) def test_get_project_info(self): From 3d5a223a0747a19e245b5968961c3c1c8adae7dc Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 15:49:58 -0700 Subject: [PATCH 32/35] Changes based on feedback --- qp_klp/Amplicon.py | 6 ++---- qp_klp/Step.py | 11 ++++++----- 2 files changed, 8 insertions(+), 9 deletions(-) diff --git a/qp_klp/Amplicon.py b/qp_klp/Amplicon.py index 45d43fb7..d9254836 100644 --- a/qp_klp/Amplicon.py +++ b/qp_klp/Amplicon.py @@ -73,10 +73,8 @@ def quality_control(self): makedirs(output_folder) job_output = [join(raw_fastq_files_path, x) for x in listdir(raw_fastq_files_path)] - job_output = [x for x in job_output if isfile(x)] - job_output = [x for x in job_output if x.endswith('fastq.gz')] - job_output = [x for x in job_output if - not basename(x).startswith('Undetermined')] + job_output = [x for x in job_output if isfile(x) and x.endswith( + 'fastq.gz') and not basename(x).startswith('Undetermined')] for raw_fastq_file in job_output: new_path = join(output_folder, basename(raw_fastq_file)) diff --git a/qp_klp/Step.py b/qp_klp/Step.py index bd8257a8..8df6c981 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -28,19 +28,20 @@ def __init__(self, output_dir, samples): # filter out the sample-ids w/no status (meaning they were # successfully processed) before writing the failed entries out to # file. - self.failed = {x.Sample_ID: [x.Sample_Project, None] for x in samples} + self.sample_state = {x.Sample_ID: [x.Sample_Project, None] for x in + samples} def write(self, failed_ids, job_name): for failed_id in failed_ids: # as a rule, if a failed_id were to appear in more than one # audit(), preserve the earliest failure, rather than the # latest one. - if self.failed[failed_id][1] is None: - self.failed[failed_id][1] = job_name + if self.sample_state[failed_id][1] is None: + self.sample_state[failed_id][1] = job_name # filter out the sample-ids w/out a failure status - filtered_fails = {x: self.failed[x] for x in self.failed if - self.failed[x][1] is not None} + filtered_fails = {x: self.sample_state[x] for x in self.sample_state if + self.sample_state[x][1] is not None} data = [] for sample_id in filtered_fails: From 245effbf4948c013c03498ca534ecf72c22aca6e Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 16:00:16 -0700 Subject: [PATCH 33/35] Add new file --- .../good-sample-sheet-transcriptomics.csv | 814 ++++++++++++++++++ 1 file changed, 814 insertions(+) create mode 100644 qp_klp/tests/data/good-sample-sheet-transcriptomics.csv diff --git a/qp_klp/tests/data/good-sample-sheet-transcriptomics.csv b/qp_klp/tests/data/good-sample-sheet-transcriptomics.csv new file mode 100644 index 00000000..d56885fc --- /dev/null +++ b/qp_klp/tests/data/good-sample-sheet-transcriptomics.csv @@ -0,0 +1,814 @@ +[Header],,,,,,,,,, +IEMFileVersion,4,,,,,,,,, +Investigator Name,Knight,,,,,,,,, +Experiment Name,RKL0042,,,,,,,,, +Date,2020-02-26,,,,,,,,, +Workflow,GenerateFASTQ,,,,,,,,, +Application,FASTQ Only,,,,,,,,, +Assay,Metatranscriptomic,,,,,,,,, +Description,,,,,,,,,, +Chemistry,Default,,,,,,,,, +,,,,,,,,,, +[Reads],,,,,,,,,, +150,,,,,,,,,, +150,,,,,,,,,, +,,,,,,,,,, +[Settings],,,,,,,,,, +ReverseComplement,0,,,,,,,,, +,,,,,,,,,, +[Data],,,,,,,,,, +Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,I5_Index_ID,index2,Sample_Project,Well_description +1,CDPH-SAL_Salmonella_Typhi_MDL-143,CDPH-SAL_Salmonella_Typhi_MDL-143,Feist_11661_P40,A1,iTru7_107_07,CCGACTAT,iTru5_01_A,ACCGACAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-143 +1,CDPH-SAL_Salmonella_Typhi_MDL-144,CDPH-SAL_Salmonella_Typhi_MDL-144,Feist_11661_P40,C1,iTru7_107_08,CCGACTAT,iTru5_02_A,CTTCGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-144 +1,CDPH-SAL_Salmonella_Typhi_MDL-145,CDPH-SAL_Salmonella_Typhi_MDL-145,Feist_11661_P40,E1,iTru7_107_09,GCCTTGTT,iTru5_03_A,AACACCAC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-145 +1,CDPH-SAL_Salmonella_Typhi_MDL-146,CDPH-SAL_Salmonella_Typhi_MDL-146,Feist_11661_P40,G1,iTru7_107_10,AACTTGCC,iTru5_04_A,CGTATCTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-146 +1,CDPH-SAL_Salmonella_Typhi_MDL-147,CDPH-SAL_Salmonella_Typhi_MDL-147,Feist_11661_P40,I1,iTru7_107_11,CAATGTGG,iTru5_05_A,GGTACGAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-147 +1,CDPH-SAL_Salmonella_Typhi_MDL-148,CDPH-SAL_Salmonella_Typhi_MDL-148,Feist_11661_P40,K1,iTru7_107_12,AAGGCTGA,iTru5_06_A,CGATCGAT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-148 +1,CDPH-SAL_Salmonella_Typhi_MDL-149,CDPH-SAL_Salmonella_Typhi_MDL-149,Feist_11661_P40,M1,iTru7_108_01,TTACCGAG,iTru5_07_A,AAGACACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-149 +1,CDPH-SAL_Salmonella_Typhi_MDL-150,CDPH-SAL_Salmonella_Typhi_MDL-150,Feist_11661_P40,O1,iTru7_108_02,GTCCTAAG,iTru5_08_A,CATCTGCT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-150 +1,CDPH-SAL_Salmonella_Typhi_MDL-151,CDPH-SAL_Salmonella_Typhi_MDL-151,Feist_11661_P40,A3,iTru7_108_03,GAAGGTTC,iTru5_09_A,CTCTCAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-151 +1,CDPH-SAL_Salmonella_Typhi_MDL-152,CDPH-SAL_Salmonella_Typhi_MDL-152,Feist_11661_P40,C3,iTru7_108_04,GAAGAGGT,iTru5_10_A,TCGTCTGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-152 +1,CDPH-SAL_Salmonella_Typhi_MDL-153,CDPH-SAL_Salmonella_Typhi_MDL-153,Feist_11661_P40,E3,iTru7_108_05,TCTGAGAG,iTru5_11_A,CAATAGCC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-153 +1,CDPH-SAL_Salmonella_Typhi_MDL-154,CDPH-SAL_Salmonella_Typhi_MDL-154,Feist_11661_P40,G3,iTru7_108_06,ACCGCATA,iTru5_12_A,CATTCGTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-154 +1,CDPH-SAL_Salmonella_Typhi_MDL-155,CDPH-SAL_Salmonella_Typhi_MDL-155,Feist_11661_P40,I3,iTru7_108_07,GAAGTACC,iTru5_01_B,AGTGGCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-155 +1,CDPH-SAL_Salmonella_Typhi_MDL-156,CDPH-SAL_Salmonella_Typhi_MDL-156,Feist_11661_P40,K3,iTru7_108_08,CAGGTATC,iTru5_02_B,GTGGTATG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-156 +1,CDPH-SAL_Salmonella_Typhi_MDL-157,CDPH-SAL_Salmonella_Typhi_MDL-157,Feist_11661_P40,M3,iTru7_108_09,TCTCTAGG,iTru5_03_B,TGAGCTGT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-157 +1,CDPH-SAL_Salmonella_Typhi_MDL-158,CDPH-SAL_Salmonella_Typhi_MDL-158,Feist_11661_P40,O3,iTru7_108_10,AAGCACTG,iTru5_04_B,CGTCAAGA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-158 +1,CDPH-SAL_Salmonella_Typhi_MDL-159,CDPH-SAL_Salmonella_Typhi_MDL-159,Feist_11661_P40,A5,iTru7_108_11,CCAAGCAA,iTru5_05_B,AAGCATCG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-159 +1,CDPH-SAL_Salmonella_Typhi_MDL-160,CDPH-SAL_Salmonella_Typhi_MDL-160,Feist_11661_P40,C5,iTru7_108_12,TGTTCGAG,iTru5_06_B,TACTCCAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-160 +1,CDPH-SAL_Salmonella_Typhi_MDL-161,CDPH-SAL_Salmonella_Typhi_MDL-161,Feist_11661_P40,E5,iTru7_109_01,CTCGTCTT,iTru5_07_B,GATACCTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-161 +1,CDPH-SAL_Salmonella_Typhi_MDL-162,CDPH-SAL_Salmonella_Typhi_MDL-162,Feist_11661_P40,G5,iTru7_109_02,CGAACTGT,iTru5_08_B,ACCTCTTC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-162 +1,CDPH-SAL_Salmonella_Typhi_MDL-163,CDPH-SAL_Salmonella_Typhi_MDL-163,Feist_11661_P40,I5,iTru7_109_03,CATTCGGT,iTru5_09_B,ACGGACTT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-163 +1,CDPH-SAL_Salmonella_Typhi_MDL-164,CDPH-SAL_Salmonella_Typhi_MDL-164,Feist_11661_P40,K5,iTru7_109_04,TCGGTTAC,iTru5_10_B,CATGTGTG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-164 +1,CDPH-SAL_Salmonella_Typhi_MDL-165,CDPH-SAL_Salmonella_Typhi_MDL-165,Feist_11661_P40,M5,iTru7_109_05,AAGTCGAG,iTru5_11_B,TGCCTCAA,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-165 +1,CDPH-SAL_Salmonella_Typhi_MDL-166,CDPH-SAL_Salmonella_Typhi_MDL-166,Feist_11661_P40,O5,iTru7_109_06,TATCGGTC,iTru5_12_B,ATCTGACC,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-166 +1,CDPH-SAL_Salmonella_Typhi_MDL-167,CDPH-SAL_Salmonella_Typhi_MDL-167,Feist_11661_P40,A7,iTru7_109_07,TATTCGCC,iTru5_01_C,CACAGACT,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-167 +1,CDPH-SAL_Salmonella_Typhi_MDL-168,CDPH-SAL_Salmonella_Typhi_MDL-168,Feist_11661_P40,C7,iTru7_109_08,GTATTGGC,iTru5_02_C,CACTGTAG,Feist_11661,CDPH-SAL_Salmonella Typhi_MDL-168 +1,P21_E_coli_ELI344,P21_E_coli_ELI344,Feist_11661_P40,E7,iTru7_109_09,AGTCGCTT,iTru5_03_C,CACAGGAA,Feist_11661,P21_E. coli_ELI344 +1,P21_E_coli_ELI345,P21_E_coli_ELI345,Feist_11661_P40,G7,iTru7_109_10,TGGCACTA,iTru5_04_C,CCATGAAC,Feist_11661,P21_E. coli_ELI345 +1,P21_E_coli_ELI347,P21_E_coli_ELI347,Feist_11661_P40,I7,iTru7_109_11,GGTTGTCA,iTru5_05_C,GCCAATAC,Feist_11661,P21_E. coli_ELI347 +1,P21_E_coli_ELI348,P21_E_coli_ELI348,Feist_11661_P40,K7,iTru7_109_12,AACCTCCT,iTru5_06_C,AGCTACCA,Feist_11661,P21_E. coli_ELI348 +1,P21_E_coli_ELI349,P21_E_coli_ELI349,Feist_11661_P40,M7,iTru7_110_01,ATGACCAG,iTru5_07_C,AACCGAAC,Feist_11661,P21_E. coli_ELI349 +1,P21_E_coli_ELI350,P21_E_coli_ELI350,Feist_11661_P40_diluted,O7,iTru7_110_02,AACCGTTC,iTru5_08_C,ATCGCAAC,Feist_11661,P21_E. coli_ELI350 +1,P21_E_coli_ELI351,P21_E_coli_ELI351,Feist_11661_P40,A9,iTru7_110_03,TCCAATCG,iTru5_09_C,GTTGCTGT,Feist_11661,P21_E. coli_ELI351 +1,P21_E_coli_ELI352,P21_E_coli_ELI352,Feist_11661_P40,C9,iTru7_110_04,CTGCACTT,iTru5_10_C,TCTAGTCC,Feist_11661,P21_E. coli_ELI352 +1,P21_E_coli_ELI353,P21_E_coli_ELI353,Feist_11661_P40,E9,iTru7_110_05,CGCTTAAC,iTru5_11_C,GACGAACT,Feist_11661,P21_E. coli_ELI353 +1,P21_E_coli_ELI354,P21_E_coli_ELI354,Feist_11661_P40,G9,iTru7_110_06,CACCACTA,iTru5_12_C,TTCGTACG,Feist_11661,P21_E. coli_ELI354 +1,P21_E_coli_ELI355,P21_E_coli_ELI355,Feist_11661_P40,I9,iTru7_110_07,ACAGCAAC,iTru5_01_D,CGACACTT,Feist_11661,P21_E. coli_ELI355 +1,P21_E_coli_ELI357,P21_E_coli_ELI357,Feist_11661_P40,K9,iTru7_110_08,GGAAGGAT,iTru5_02_D,AGACGCTA,Feist_11661,P21_E. coli_ELI357 +1,P21_E_coli_ELI358,P21_E_coli_ELI358,Feist_11661_P40_diluted,M9,iTru7_110_09,GGCGTTAT,iTru5_03_D,TGACAACC,Feist_11661,P21_E. coli_ELI358 +1,P21_E_coli_ELI359,P21_E_coli_ELI359,Feist_11661_P40,O9,iTru7_110_10,CTGTTGAC,iTru5_04_D,GGTACTTC,Feist_11661,P21_E. coli_ELI359 +1,P21_E_coli_ELI361,P21_E_coli_ELI361,Feist_11661_P40_diluted,A11,iTru7_110_11,GTCATCGA,iTru5_05_D,CTGTATGC,Feist_11661,P21_E. coli_ELI361 +1,P21_E_coli_ELI362,P21_E_coli_ELI362,Feist_11661_P40,C11,iTru7_110_12,TGACTTCG,iTru5_06_D,TCGACAAG,Feist_11661,P21_E. coli_ELI362 +1,P21_E_coli_ELI363,P21_E_coli_ELI363,Feist_11661_P40_diluted,E11,iTru7_111_01,CGATAGAG,iTru5_07_D,GCTGAATC,Feist_11661,P21_E. coli_ELI363 +1,P21_E_coli_ELI364,P21_E_coli_ELI364,Feist_11661_P40,G11,iTru7_111_02,TTCGTTGG,iTru5_08_D,AGTTGTGC,Feist_11661,P21_E. coli_ELI364 +1,P21_E_coli_ELI365,P21_E_coli_ELI365,Feist_11661_P40,I11,iTru7_111_03,TGGAGAGT,iTru5_09_D,TGTCGACT,Feist_11661,P21_E. coli_ELI365 +1,P21_E_coli_ELI366,P21_E_coli_ELI366,Feist_11661_P40_diluted,K11,iTru7_111_04,TCAGACGA,iTru5_10_D,AAGGCTCT,Feist_11661,P21_E. coli_ELI366 +1,P21_E_coli_ELI367,P21_E_coli_ELI367,Feist_11661_P40_diluted,M11,iTru7_111_05,GACGAATG,iTru5_11_D,CCTAACAG,Feist_11661,P21_E. coli_ELI367 +1,P21_E_coli_ELI368,P21_E_coli_ELI368,Feist_11661_P40,O11,iTru7_111_06,CATGAGGA,iTru5_12_D,AAGACGAG,Feist_11661,P21_E. coli_ELI368 +1,P21_E_coli_ELI369,P21_E_coli_ELI369,Feist_11661_P40,A13,iTru7_111_07,CGGTTGTT,iTru5_01_E,GACTTGTG,Feist_11661,P21_E. coli_ELI369 +1,stALE_E_coli_A1_F21_I1_R1,stALE_E_coli_A1_F21_I1_R1,Feist_11661_P40,C13,iTru7_111_08,TCCGTATG,iTru5_02_E,CAACTCCA,Feist_11661,stALE_E. coli_A1.F21.I1.R1 +1,stALE_E_coli_A2_F21_I1_R1,stALE_E_coli_A2_F21_I1_R1,Feist_11661_P40,E13,iTru7_111_09,TGTGGTAC,iTru5_03_E,TGTTCCGT,Feist_11661,stALE_E. coli_A2.F21.I1.R1 +1,stALE_E_coli_A3_F18_I1_R1,stALE_E_coli_A3_F18_I1_R1,Feist_11661_P40,G13,iTru7_111_10,AGAACGAG,iTru5_04_E,ACCGCTAT,Feist_11661,stALE_E. coli_A3.F18.I1.R1 +1,stALE_E_coli_A3_F40_I1_R1,stALE_E_coli_A3_F40_I1_R1,Feist_11661_P40,I13,iTru7_111_11,CTTCGTTC,iTru5_05_E,CTTAGGAC,Feist_11661,stALE_E. coli_A3.F40.I1.R1 +1,stALE_E_coli_A4_F21_I1_R1,stALE_E_coli_A4_F21_I1_R1,Feist_11661_P40,K13,iTru7_111_12,CCAATAGG,iTru5_06_E,TATGACCG,Feist_11661,stALE_E. coli_A4.F21.I1.R1 +1,stALE_E_coli_A4_F21_I1_R2,stALE_E_coli_A4_F21_I1_R2,Feist_11661_P40,M13,iTru7_112_01,ACCATCCA,iTru5_07_E,AGCTAGTG,Feist_11661,stALE_E. coli_A4.F21.I1.R2 +1,stALE_E_coli_A4_F42_I1_R1,stALE_E_coli_A4_F42_I1_R1,Feist_11661_P40,O13,iTru7_112_02,CACACATG,iTru5_08_E,GAACGAAG,Feist_11661,stALE_E. coli_A4.F42.I1.R1 +1,stALE_E_coli_A5_F21_I1_R1,stALE_E_coli_A5_F21_I1_R1,Feist_11661_P40,A15,iTru7_112_03,CTTGTCGA,iTru5_09_E,CGTCTAAC,Feist_11661,stALE_E. coli_A5.F21.I1.R1 +1,stALE_E_coli_A5_F42_I1_R1,stALE_E_coli_A5_F42_I1_R1,Feist_11661_P40,C15,iTru7_112_04,AGTCTCAC,iTru5_10_E,AACCAGAG,Feist_11661,stALE_E. coli_A5.F42.I1.R1 +1,stALE_E_coli_A6_F21_I1_R1,stALE_E_coli_A6_F21_I1_R1,Feist_11661_P40,E15,iTru7_112_05,AGTTGGCT,iTru5_11_E,CGCCTTAT,Feist_11661,stALE_E. coli_A6.F21.I1.R1 +1,stALE_E_coli_A6_F43_I1_R1,stALE_E_coli_A6_F43_I1_R1,Feist_11661_P40,G15,iTru7_112_06,CCGGAATT,iTru5_12_E,CTCGTTCT,Feist_11661,stALE_E. coli_A6.F43.I1.R1 +1,stALE_E_coli_A7_F21_I1_R1,stALE_E_coli_A7_F21_I1_R1,Feist_11661_P40,I15,iTru7_112_07,CAGTGAAG,iTru5_01_F,GTGAGACT,Feist_11661,stALE_E. coli_A7.F21.I1.R1 +1,stALE_E_coli_A7_F42_I1_R1,stALE_E_coli_A7_F42_I1_R1,Feist_11661_P40,K15,iTru7_112_08,CCTACTGA,iTru5_02_F,AACACGCT,Feist_11661,stALE_E. coli_A7.F42.I1.R1 +1,stALE_E_coli_A8_F20_I1_R1,stALE_E_coli_A8_F20_I1_R1,Feist_11661_P40,M15,iTru7_112_09,TGTGAAGC,iTru5_03_F,CCTAGAGA,Feist_11661,stALE_E. coli_A8.F20.I1.R1 +1,stALE_E_coli_A8_F42_I1_R1,stALE_E_coli_A8_F42_I1_R1,Feist_11661_P40,O15,iTru7_112_10,GTCTGATC,iTru5_04_F,TTCCAGGT,Feist_11661,stALE_E. coli_A8.F42.I1.R1 +1,stALE_E_coli_A9_F21_I1_R1,stALE_E_coli_A9_F21_I1_R1,Feist_11661_P40,A17,iTru7_112_11,TTCAGGAG,iTru5_05_F,TCAGCCTT,Feist_11661,stALE_E. coli_A9.F21.I1.R1 +1,stALE_E_coli_A9_F44_I1_R1,stALE_E_coli_A9_F44_I1_R1,Feist_11661_P40,C17,iTru7_112_12,ACGATGAC,iTru5_06_F,AGCCAACT,Feist_11661,stALE_E. coli_A9.F44.I1.R1 +1,stALE_E_coli_A10_F21_I1_R1,stALE_E_coli_A10_F21_I1_R1,Feist_11661_P40,E17,iTru7_113_01,CGTTATGC,iTru5_07_F,CTAGCTCA,Feist_11661,stALE_E. coli_A10.F21.I1.R1 +1,stALE_E_coli_A10_F43_I1_R1,stALE_E_coli_A10_F43_I1_R1,Feist_11661_P40,G17,iTru7_113_02,GATACTGG,iTru5_08_F,GGAAGAGA,Feist_11661,stALE_E. coli_A10.F43.I1.R1 +1,stALE_E_coli_A10_F131_I1_R1,stALE_E_coli_A10_F131_I1_R1,Feist_11661_P40,I17,iTru7_113_03,CTACTTGG,iTru5_09_F,AACACTGG,Feist_11661,stALE_E. coli_A10.F131.I1.R1 +1,stALE_E_coli_A11_F21_I1_R1,stALE_E_coli_A11_F21_I1_R1,Feist_11661_P40,K17,iTru7_113_04,CATACCAC,iTru5_10_F,ACTATCGC,Feist_11661,stALE_E. coli_A11.F21.I1.R1 +1,stALE_E_coli_A11_F43_I1_R1,stALE_E_coli_A11_F43_I1_R1,Feist_11661_P40,M17,iTru7_113_05,ACATTGCG,iTru5_11_F,ACAACAGC,Feist_11661,stALE_E. coli_A11.F43.I1.R1 +1,stALE_E_coli_A11_F119_I1_R1,stALE_E_coli_A11_F119_I1_R1,Feist_11661_P40,O17,iTru7_113_06,TGATCGGA,iTru5_12_F,TGTGGCTT,Feist_11661,stALE_E. coli_A11.F119.I1.R1 +1,stALE_E_coli_A12_F21_I1_R1,stALE_E_coli_A12_F21_I1_R1,Feist_11661_P40,A19,iTru7_113_07,AAGTGTCG,iTru5_01_G,GTTCCATG,Feist_11661,stALE_E. coli_A12.F21.I1.R1 +1,stALE_E_coli_A12_F43_I1_R1,stALE_E_coli_A12_F43_I1_R1,Feist_11661_P40,C19,iTru7_113_08,GAACGCTT,iTru5_02_G,TGGATGGT,Feist_11661,stALE_E. coli_A12.F43.I1.R1 +1,stALE_E_coli_A12_F136_I1_R1,stALE_E_coli_A12_F136_I1_R1,Feist_11661_P40,E19,iTru7_113_09,TCAAGGAC,iTru5_03_G,GCATAACG,Feist_11661,stALE_E. coli_A12.F136.I1.R1 +1,stALE_E_coli_A13_F20_I1_R1,stALE_E_coli_A13_F20_I1_R1,Feist_11661_P40,G19,iTru7_113_10,TCAACTGG,iTru5_04_G,TCGAACCT,Feist_11661,stALE_E. coli_A13.F20.I1.R1 +1,stALE_E_coli_A13_F42_I1_R1,stALE_E_coli_A13_F42_I1_R1,Feist_11661_P40,I19,iTru7_113_11,GGTTGATG,iTru5_05_G,ACATGCCA,Feist_11661,stALE_E. coli_A13.F42.I1.R1 +1,stALE_E_coli_A13_F121_I1_R1,stALE_E_coli_A13_F121_I1_R1,Feist_11661_P40,K19,iTru7_113_12,AAGGACAC,iTru5_06_G,GATCTTGC,Feist_11661,stALE_E. coli_A13.F121.I1.R1 +1,stALE_E_coli_A14_F20_I1_R1,stALE_E_coli_A14_F20_I1_R1,Feist_11661_P40,M19,iTru7_114_01,TTGATCCG,iTru5_07_G,GTTAAGCG,Feist_11661,stALE_E. coli_A14.F20.I1.R1 +1,stALE_E_coli_A14_F42_I1_R1,stALE_E_coli_A14_F42_I1_R1,Feist_11661_P40,O19,iTru7_114_02,GGTGATTC,iTru5_08_G,GTCATCGT,Feist_11661,stALE_E. coli_A14.F42.I1.R1 +1,stALE_E_coli_A14_F133_I1_R1,stALE_E_coli_A14_F133_I1_R1,Feist_11661_P40,A21,iTru7_114_03,GATTGCTC,iTru5_09_G,TCAGACAC,Feist_11661,stALE_E. coli_A14.F133.I1.R1 +1,stALE_E_coli_A15_F21_I1_R1,stALE_E_coli_A15_F21_I1_R1,Feist_11661_P40,C21,iTru7_114_04,ACCTGGAA,iTru5_10_G,GTCCTAAG,Feist_11661,stALE_E. coli_A15.F21.I1.R1 +1,stALE_E_coli_A15_F42_I1_R1,stALE_E_coli_A15_F42_I1_R1,Feist_11661_P40,E21,iTru7_114_05,CATCTACG,iTru5_11_G,AGACCTTG,Feist_11661,stALE_E. coli_A15.F42.I1.R1 +1,stALE_E_coli_A15_F117_I1_R1,stALE_E_coli_A15_F117_I1_R1,Feist_11661_P40,G21,iTru7_114_06,CCGTATCT,iTru5_12_G,AGACATGC,Feist_11661,stALE_E. coli_A15.F117.I1.R1 +1,stALE_E_coli_A16_F20_I1_R1,stALE_E_coli_A16_F20_I1_R1,Feist_11661_P40,I21,iTru7_114_07,CGGAATAC,iTru5_01_H,TAGCTGAG,Feist_11661,stALE_E. coli_A16.F20.I1.R1 +1,stALE_E_coli_A16_F42_I1_R1,stALE_E_coli_A16_F42_I1_R1,Feist_11661_P40,K21,iTru7_114_08,CTCCTAGA,iTru5_02_H,TTCGAAGC,Feist_11661,stALE_E. coli_A16.F42.I1.R1 +1,stALE_E_coli_A16_F134_I1_R1,stALE_E_coli_A16_F134_I1_R1,Feist_11661_P40,M21,iTru7_114_09,TGGTAGCT,iTru5_03_H,CAGTGCTT,Feist_11661,stALE_E. coli_A16.F134.I1.R1 +1,stALE_E_coli_A17_F21_I1_R1,stALE_E_coli_A17_F21_I1_R1,Feist_11661_P40,O21,iTru7_114_10,TCGAAGGT,iTru5_04_H,TAGTGCCA,Feist_11661,stALE_E. coli_A17.F21.I1.R1 +1,stALE_E_coli_A17_F118_I1_R1,stALE_E_coli_A17_F118_I1_R1,Feist_11661_P40,A23,iTru7_114_11,ACATAGGC,iTru5_05_H,GATGGAGT,Feist_11661,stALE_E. coli_A17.F118.I1.R1 +1,stALE_E_coli_A18_F18_I1_R1,stALE_E_coli_A18_F18_I1_R1,Feist_11661_P40,C23,iTru7_114_12,CTCAGAGT,iTru5_06_H,CCTCGTTA,Feist_11661,stALE_E. coli_A18.F18.I1.R1 +1,stALE_E_coli_A18_F39_I1_R1,stALE_E_coli_A18_F39_I1_R1,Feist_11661_P40,E23,iTru7_201_01,CTTGGATG,iTru5_07_H,CGATTGGA,Feist_11661,stALE_E. coli_A18.F39.I1.R1 +1,stALE_E_coli_A18_F130_I1_R1,stALE_E_coli_A18_F130_I1_R1,Feist_11661_P40,G23,iTru7_201_02,CAGTTGGA,iTru5_08_H,CCAACGAA,Feist_11661,stALE_E. coli_A18.F130.I1.R1 +1,3A,3A,Gerwick_tubes,I23,iTru7_201_03,GATAGGCT,iTru5_09_H,AGAAGGAC,Gerwick_6123,3A +1,4A,4A,Gerwick_tubes,K23,iTru7_201_04,TTGACAGG,iTru5_10_H,TGACCGTT,Gerwick_6123,4A +1,BLANK_40_12G,BLANK_40_12G,Feist_11661_P40,M23,iTru7_201_05,AGAATGCC,iTru5_11_H,GCGTTAGA,Feist_11661,BLANK.40.12G +1,BLANK_40_12H,BLANK_40_12H,Feist_11661_P40,O23,iTru7_201_06,CTACATCC,iTru5_12_H,TCTAGGAG,Feist_11661,BLANK.40.12H +1,Pputida_JBEI__HGL_Pputida_107_BP6,Pputida_JBEI__HGL_Pputida_107_BP6,Feist_11661_P41,A2,iTru7_201_07,TCATGGTG,iTru5_13_A,GGTATAGG,Feist_11661,Pputida_JBEI__HGL_Pputida_107_BP6 +1,Pputida_JBEI__HGL_Pputida_108_BP7,Pputida_JBEI__HGL_Pputida_108_BP7,Feist_11661_P41,C2,iTru7_201_08,TACACGCT,iTru5_14_A,TCCGATCA,Feist_11661,Pputida_JBEI__HGL_Pputida_108_BP7 +1,Pputida_JBEI__HGL_Pputida_109_BP8,Pputida_JBEI__HGL_Pputida_109_BP8,Feist_11661_P41,E2,iTru7_201_09,TACGGTTG,iTru5_15_A,CGACCTAA,Feist_11661,Pputida_JBEI__HGL_Pputida_109_BP8 +1,Pputida_JBEI__HGL_Pputida_110_M2,Pputida_JBEI__HGL_Pputida_110_M2,Feist_11661_P41,G2,iTru7_201_10,GGATACCA,iTru5_16_A,GACATCTC,Feist_11661,Pputida_JBEI__HGL_Pputida_110_M2 +1,Pputida_JBEI__HGL_Pputida_111_M5,Pputida_JBEI__HGL_Pputida_111_M5,Feist_11661_P41,I2,iTru7_201_11,TCGACATC,iTru5_17_A,CCAGTATC,Feist_11661,Pputida_JBEI__HGL_Pputida_111_M5 +1,Pputida_TALE__HGL_Pputida_112,Pputida_TALE__HGL_Pputida_112,Feist_11661_P41,K2,iTru7_201_12,GTTGTAGC,iTru5_18_A,ACGCTTCT,Feist_11661,Pputida_TALE__HGL_Pputida_112 +1,Pputida_TALE__HGL_Pputida_113,Pputida_TALE__HGL_Pputida_113,Feist_11661_P41,M2,iTru7_202_01,ATACGACC,iTru5_19_A,AACGCACA,Feist_11661,Pputida_TALE__HGL_Pputida_113 +1,Pputida_TALE__HGL_Pputida_114,Pputida_TALE__HGL_Pputida_114,Feist_11661_P41,O2,iTru7_202_02,TTCCAAGG,iTru5_20_A,TGATCACG,Feist_11661,Pputida_TALE__HGL_Pputida_114 +1,Pputida_TALE__HGL_Pputida_115,Pputida_TALE__HGL_Pputida_115,Feist_11661_P41,A4,iTru7_202_03,TTGCAGAC,iTru5_21_A,GCGTATCA,Feist_11661,Pputida_TALE__HGL_Pputida_115 +1,Pputida_TALE__HGL_Pputida_116,Pputida_TALE__HGL_Pputida_116,Feist_11661_P41,C4,iTru7_202_04,TGCCATTC,iTru5_22_A,GTGTCCTT,Feist_11661,Pputida_TALE__HGL_Pputida_116 +1,Pputida_TALE__HGL_Pputida_117,Pputida_TALE__HGL_Pputida_117,Feist_11661_P41,E4,iTru7_202_05,GATGTGTG,iTru5_23_A,GGTAACGT,Feist_11661,Pputida_TALE__HGL_Pputida_117 +1,Pputida_TALE__HGL_Pputida_118,Pputida_TALE__HGL_Pputida_118,Feist_11661_P41,G4,iTru7_202_06,ACTCTCGA,iTru5_24_A,CGAGAGAA,Feist_11661,Pputida_TALE__HGL_Pputida_118 +1,Pputida_TALE__HGL_Pputida_119,Pputida_TALE__HGL_Pputida_119,Feist_11661_P41,I4,iTru7_202_07,GAGTCTCT,iTru5_13_B,CATTGACG,Feist_11661,Pputida_TALE__HGL_Pputida_119 +1,Pputida_TALE__HGL_Pputida_120,Pputida_TALE__HGL_Pputida_120,Feist_11661_P41,K4,iTru7_202_08,CAACACCT,iTru5_14_B,GGTGATGA,Feist_11661,Pputida_TALE__HGL_Pputida_120 +1,Pputida_TALE__HGL_Pputida_121,Pputida_TALE__HGL_Pputida_121,Feist_11661_P41,M4,iTru7_202_09,CAGTCTTC,iTru5_15_B,AACCGTGT,Feist_11661,Pputida_TALE__HGL_Pputida_121 +1,Pputida_TALE__HGL_Pputida_122,Pputida_TALE__HGL_Pputida_122,Feist_11661_P41,O4,iTru7_202_10,GGACTGTT,iTru5_16_B,CCTATTGG,Feist_11661,Pputida_TALE__HGL_Pputida_122 +1,Pputida_TALE__HGL_Pputida_123,Pputida_TALE__HGL_Pputida_123,Feist_11661_P41,A6,iTru7_202_11,CTTAGTGG,iTru5_17_B,TCAGTAGG,Feist_11661,Pputida_TALE__HGL_Pputida_123 +1,Pputida_TALE__HGL_Pputida_124,Pputida_TALE__HGL_Pputida_124,Feist_11661_P41,C6,iTru7_202_12,ATTGCGTG,iTru5_18_B,TATGCGGT,Feist_11661,Pputida_TALE__HGL_Pputida_124 +1,Pputida_TALE__HGL_Pputida_125,Pputida_TALE__HGL_Pputida_125,Feist_11661_P41,E6,iTru7_203_01,GTAACGAC,iTru5_19_B,ATGCCTAG,Feist_11661,Pputida_TALE__HGL_Pputida_125 +1,Pputida_TALE__HGL_Pputida_126,Pputida_TALE__HGL_Pputida_126,Feist_11661_P41,G6,iTru7_203_02,CTTGCTGT,iTru5_20_B,CTAGCAGT,Feist_11661,Pputida_TALE__HGL_Pputida_126 +1,Pputida_TALE__HGL_Pputida_127,Pputida_TALE__HGL_Pputida_127,Feist_11661_P41,I6,iTru7_203_03,GTTGTTCG,iTru5_21_B,AGGTCAAC,Feist_11661,Pputida_TALE__HGL_Pputida_127 +1,Pputida_TALE__HGL_Pputida_128,Pputida_TALE__HGL_Pputida_128,Feist_11661_P41,K6,iTru7_203_04,CGTTGAGT,iTru5_22_B,GAACGTGA,Feist_11661,Pputida_TALE__HGL_Pputida_128 +1,Pputida_TALE__HGL_Pputida_129,Pputida_TALE__HGL_Pputida_129,Feist_11661_P41,M6,iTru7_203_05,TCGAACCA,iTru5_23_B,ATCATGCG,Feist_11661,Pputida_TALE__HGL_Pputida_129 +1,Pputida_TALE__HGL_Pputida_130,Pputida_TALE__HGL_Pputida_130,Feist_11661_P41,O6,iTru7_203_06,AGACCGTA,iTru5_24_B,CAACGAGT,Feist_11661,Pputida_TALE__HGL_Pputida_130 +1,Pputida_TALE__HGL_Pputida_131,Pputida_TALE__HGL_Pputida_131,Feist_11661_P41,A8,iTru7_203_07,CAGAGTGT,iTru5_13_C,CGCAATGT,Feist_11661,Pputida_TALE__HGL_Pputida_131 +1,Pputida_TALE__HGL_Pputida_132,Pputida_TALE__HGL_Pputida_132,Feist_11661_P41,C8,iTru7_203_08,GACAAGAG,iTru5_14_C,AACAAGGC,Feist_11661,Pputida_TALE__HGL_Pputida_132 +1,Pputida_TALE__HGL_Pputida_133,Pputida_TALE__HGL_Pputida_133,Feist_11661_P41,E8,iTru7_203_09,GAACACAC,iTru5_15_C,ACCATGTC,Feist_11661,Pputida_TALE__HGL_Pputida_133 +1,Pputida_TALE__HGL_Pputida_134,Pputida_TALE__HGL_Pputida_134,Feist_11661_P41,G8,iTru7_203_10,GCTTAGCT,iTru5_16_C,AATCCAGC,Feist_11661,Pputida_TALE__HGL_Pputida_134 +1,Pputida_TALE__HGL_Pputida_135,Pputida_TALE__HGL_Pputida_135,Feist_11661_P41,I8,iTru7_203_11,GAAGGAAG,iTru5_17_C,TTGCAACG,Feist_11661,Pputida_TALE__HGL_Pputida_135 +1,Pputida_TALE__HGL_Pputida_136,Pputida_TALE__HGL_Pputida_136,Feist_11661_P41,K8,iTru7_203_12,CAGTTCTG,iTru5_18_C,ACCTTCGA,Feist_11661,Pputida_TALE__HGL_Pputida_136 +1,Pputida_TALE__HGL_Pputida_137,Pputida_TALE__HGL_Pputida_137,Feist_11661_P41,M8,iTru7_204_01,CAGGAGAT,iTru5_19_C,CATACGGA,Feist_11661,Pputida_TALE__HGL_Pputida_137 +1,Pputida_TALE__HGL_Pputida_138,Pputida_TALE__HGL_Pputida_138,Feist_11661_P41,O8,iTru7_204_02,GTAGCATC,iTru5_20_C,GACCGATA,Feist_11661,Pputida_TALE__HGL_Pputida_138 +1,Pputida_TALE__HGL_Pputida_139,Pputida_TALE__HGL_Pputida_139,Feist_11661_P41,A10,iTru7_204_03,TCGTTCGT,iTru5_21_C,AAGCTGGT,Feist_11661,Pputida_TALE__HGL_Pputida_139 +1,Pputida_TALE__HGL_Pputida_140,Pputida_TALE__HGL_Pputida_140,Feist_11661_P41,C10,iTru7_204_04,GGCAAGTT,iTru5_22_C,ACACCTCA,Feist_11661,Pputida_TALE__HGL_Pputida_140 +1,Pputida_TALE__HGL_Pputida_141,Pputida_TALE__HGL_Pputida_141,Feist_11661_P41,E10,iTru7_204_05,ACCATGTG,iTru5_23_C,CGGAGTAT,Feist_11661,Pputida_TALE__HGL_Pputida_141 +1,Pputida_TALE__HGL_Pputida_142,Pputida_TALE__HGL_Pputida_142,Feist_11661_P41,G10,iTru7_204_06,CAACGGAT,iTru5_24_C,CTCGACTT,Feist_11661,Pputida_TALE__HGL_Pputida_142 +1,Pputida_TALE__HGL_Pputida_143,Pputida_TALE__HGL_Pputida_143,Feist_11661_P41,I10,iTru7_204_07,CAATCGAC,iTru5_13_D,ATCCACGA,Feist_11661,Pputida_TALE__HGL_Pputida_143 +1,Pputida_TALE__HGL_Pputida_144,Pputida_TALE__HGL_Pputida_144,Feist_11661_P41,K10,iTru7_204_08,GTGTTCCT,iTru5_14_D,ACAGTTCG,Feist_11661,Pputida_TALE__HGL_Pputida_144 +1,Pputida_PALE__HGL_Pputida_145,Pputida_PALE__HGL_Pputida_145,Feist_11661_P41_diluted,M10,iTru7_204_09,AGGAACCT,iTru5_15_D,ACAAGACG,Feist_11661,Pputida_PALE__HGL_Pputida_145 +1,Pputida_PALE__HGL_Pputida_146,Pputida_PALE__HGL_Pputida_146,Feist_11661_P41_diluted,O10,iTru7_204_10,ACCTTCTC,iTru5_16_D,ATCGTGGT,Feist_11661,Pputida_PALE__HGL_Pputida_146 +1,Pputida_PALE__HGL_Pputida_147,Pputida_PALE__HGL_Pputida_147,Feist_11661_P41_diluted,A12,iTru7_204_11,CCGTAAGA,iTru5_17_D,AGTCAGGT,Feist_11661,Pputida_PALE__HGL_Pputida_147 +1,Pputida_PALE__HGL_Pputida_148,Pputida_PALE__HGL_Pputida_148,Feist_11661_P41_diluted,C12,iTru7_204_12,ATCGGTGT,iTru5_18_D,CATCAACC,Feist_11661,Pputida_PALE__HGL_Pputida_148 +1,Pputida_PALE__HGL_Pputida_149,Pputida_PALE__HGL_Pputida_149,Feist_11661_P41_diluted,E12,iTru7_205_01,AGCTCCTA,iTru5_19_D,GGTCACTA,Feist_11661,Pputida_PALE__HGL_Pputida_149 +1,Pputida_PALE__HGL_Pputida_150,Pputida_PALE__HGL_Pputida_150,Feist_11661_P41,G12,iTru7_205_02,CCTTGATC,iTru5_20_D,CGGCATTA,Feist_11661,Pputida_PALE__HGL_Pputida_150 +1,Pputida_PALE__HGL_Pputida_151,Pputida_PALE__HGL_Pputida_151,Feist_11661_P41_diluted,I12,iTru7_205_03,CCATTCAC,iTru5_21_D,ACTCGATC,Feist_11661,Pputida_PALE__HGL_Pputida_151 +1,Pputida_PALE__HGL_Pputida_152,Pputida_PALE__HGL_Pputida_152,Feist_11661_P41,K12,iTru7_205_04,GGACAATC,iTru5_22_D,ATAGGTCC,Feist_11661,Pputida_PALE__HGL_Pputida_152 +1,Pputida_PALE__HGL_Pputida_153,Pputida_PALE__HGL_Pputida_153,Feist_11661_P41,M12,iTru7_205_05,AAGGCGTT,iTru5_23_D,CAGTCACA,Feist_11661,Pputida_PALE__HGL_Pputida_153 +1,Pputida_PALE__HGL_Pputida_154,Pputida_PALE__HGL_Pputida_154,Feist_11661_P41_diluted,O12,iTru7_205_06,GCCATAAC,iTru5_24_D,TAGTGGTG,Feist_11661,Pputida_PALE__HGL_Pputida_154 +1,Pputida_PALE__HGL_Pputida_155,Pputida_PALE__HGL_Pputida_155,Feist_11661_P41_diluted,A14,iTru7_205_07,GAAGTTGG,iTru5_13_E,CTCCTGAA,Feist_11661,Pputida_PALE__HGL_Pputida_155 +1,Pputida_PALE__HGL_Pputida_156,Pputida_PALE__HGL_Pputida_156,Feist_11661_P41_diluted,C14,iTru7_205_08,AGCCAAGT,iTru5_14_E,AATCGCTG,Feist_11661,Pputida_PALE__HGL_Pputida_156 +1,Pputida_PALE__HGL_Pputida_157,Pputida_PALE__HGL_Pputida_157,Feist_11661_P41,E14,iTru7_205_09,TGACTGAC,iTru5_15_E,TGATAGGC,Feist_11661,Pputida_PALE__HGL_Pputida_157 +1,Pputida_PALE__HGL_Pputida_158,Pputida_PALE__HGL_Pputida_158,Feist_11661_P41_diluted,G14,iTru7_205_10,CACCTGTT,iTru5_16_E,ATGCGTCA,Feist_11661,Pputida_PALE__HGL_Pputida_158 +1,Pputida_PALE__HGL_Pputida_159,Pputida_PALE__HGL_Pputida_159,Feist_11661_P41,I14,iTru7_205_11,ATCCGGTA,iTru5_17_E,CAGCATAC,Feist_11661,Pputida_PALE__HGL_Pputida_159 +1,Pputida_PALE__HGL_Pputida_160,Pputida_PALE__HGL_Pputida_160,Feist_11661_P41,K14,iTru7_205_12,ATCTGTCC,iTru5_18_E,AAGTGCAG,Feist_11661,Pputida_PALE__HGL_Pputida_160 +1,Pputida_PALE__HGL_Pputida_161,Pputida_PALE__HGL_Pputida_161,Feist_11661_P41_diluted,M14,iTru7_206_01,CCAAGACT,iTru5_19_E,GTATTCCG,Feist_11661,Pputida_PALE__HGL_Pputida_161 +1,Pputida_PALE__HGL_Pputida_162,Pputida_PALE__HGL_Pputida_162,Feist_11661_P41_diluted,O14,iTru7_206_02,ATGGCGAA,iTru5_20_E,GTGATCCA,Feist_11661,Pputida_PALE__HGL_Pputida_162 +1,Pputida_PALE__HGL_Pputida_163,Pputida_PALE__HGL_Pputida_163,Feist_11661_P41_diluted,A16,iTru7_206_03,GGTAGTGT,iTru5_21_E,TATGGCAC,Feist_11661,Pputida_PALE__HGL_Pputida_163 +1,Pputida_PALE__HGL_Pputida_164,Pputida_PALE__HGL_Pputida_164,Feist_11661_P41,C16,iTru7_206_04,TCGCTGTT,iTru5_22_E,ACCATAGG,Feist_11661,Pputida_PALE__HGL_Pputida_164 +1,Pputida_PALE__HGL_Pputida_165,Pputida_PALE__HGL_Pputida_165,Feist_11661_P41_diluted,E16,iTru7_206_05,AACGTGGA,iTru5_23_E,CTCCAATC,Feist_11661,Pputida_PALE__HGL_Pputida_165 +1,Pputida_PALE__HGL_Pputida_166,Pputida_PALE__HGL_Pputida_166,Feist_11661_P41,G16,iTru7_206_06,AACGACGT,iTru5_24_E,AGATACGG,Feist_11661,Pputida_PALE__HGL_Pputida_166 +1,Pputida_PALE__HGL_Pputida_167,Pputida_PALE__HGL_Pputida_167,Feist_11661_P41,I16,iTru7_206_07,AACAGGAC,iTru5_13_F,TCGATGAC,Feist_11661,Pputida_PALE__HGL_Pputida_167 +1,Pputida_PALE__HGL_Pputida_168,Pputida_PALE__HGL_Pputida_168,Feist_11661_P41,K16,iTru7_206_08,AAGCGCAT,iTru5_14_F,CCAACACT,Feist_11661,Pputida_PALE__HGL_Pputida_168 +1,Pputida_PALE__HGL_Pputida_169,Pputida_PALE__HGL_Pputida_169,Feist_11661_P41,M16,iTru7_206_09,CACTGACA,iTru5_15_F,CTTCACTG,Feist_11661,Pputida_PALE__HGL_Pputida_169 +1,Pputida_PALE__HGL_Pputida_170,Pputida_PALE__HGL_Pputida_170,Feist_11661_P41,O16,iTru7_206_10,AGGTCACT,iTru5_16_F,CGATGTTC,Feist_11661,Pputida_PALE__HGL_Pputida_170 +1,Pputida_PALE__HGL_Pputida_171,Pputida_PALE__HGL_Pputida_171,Feist_11661_P41,A18,iTru7_206_11,GTCACTGT,iTru5_17_F,ACCGGTTA,Feist_11661,Pputida_PALE__HGL_Pputida_171 +1,Pputida_PALE__HGL_Pputida_172,Pputida_PALE__HGL_Pputida_172,Feist_11661_P41,C18,iTru7_206_12,ATGCCAAC,iTru5_18_F,CTTACAGC,Feist_11661,Pputida_PALE__HGL_Pputida_172 +1,Pputida_PALE__HGL_Pputida_173,Pputida_PALE__HGL_Pputida_173,Feist_11661_P41,E18,iTru7_207_01,CACGTTGT,iTru5_19_F,TGGCTCTT,Feist_11661,Pputida_PALE__HGL_Pputida_173 +1,Pputida_PALE__HGL_Pputida_174,Pputida_PALE__HGL_Pputida_174,Feist_11661_P41_diluted,G18,iTru7_207_02,TATTCCGG,iTru5_20_F,AAGACCGT,Feist_11661,Pputida_PALE__HGL_Pputida_174 +1,Pputida_PALE__HGL_Pputida_175,Pputida_PALE__HGL_Pputida_175,Feist_11661_P41,I18,iTru7_207_03,TGCTTCCA,iTru5_21_F,GGACATCA,Feist_11661,Pputida_PALE__HGL_Pputida_175 +1,Pputida_PALE__HGL_Pputida_176,Pputida_PALE__HGL_Pputida_176,Feist_11661_P41_diluted,K18,iTru7_207_04,GTCTAGGT,iTru5_22_F,TTGGTGCA,Feist_11661,Pputida_PALE__HGL_Pputida_176 +1,JM-Metabolic__GN0_2005,JM-Metabolic__GN0_2005,Feist_11661_P41,M18,iTru7_207_05,GTTCAACC,iTru5_23_F,AAGCGTTC,Feist_11661,JM-Metabolic__GN0_2005 +1,JM-Metabolic__GN0_2007,JM-Metabolic__GN0_2007,Feist_11661_P41,O18,iTru7_207_06,CGCAATCT,iTru5_24_F,ACTCTCCA,Feist_11661,JM-Metabolic__GN0_2007 +1,JM-Metabolic__GN0_2009,JM-Metabolic__GN0_2009,Feist_11661_P41,A20,iTru7_207_07,TTAAGCGG,iTru5_13_G,GAACCTTC,Feist_11661,JM-Metabolic__GN0_2009 +1,JM-Metabolic__GN0_2094,JM-Metabolic__GN0_2094,Feist_11661_P41_diluted,C20,iTru7_207_08,TGCTTGGT,iTru5_14_G,GGAACATG,Feist_11661,JM-Metabolic__GN0_2094 +1,JM-Metabolic__GN0_2099,JM-Metabolic__GN0_2099,Feist_11661_P41_diluted,E20,iTru7_207_09,ACACACTC,iTru5_15_G,GCCTATGT,Feist_11661,JM-Metabolic__GN0_2099 +1,JM-Metabolic__GN0_2148,JM-Metabolic__GN0_2148,Feist_11661_P41_diluted,G20,iTru7_207_10,CCACTTCT,iTru5_16_G,CCGTAACT,Feist_11661,JM-Metabolic__GN0_2148 +1,JM-Metabolic__GN0_2165,JM-Metabolic__GN0_2165,Feist_11661_P41_diluted,I20,iTru7_207_11,TTGGTCTC,iTru5_17_G,CGGATCAA,Feist_11661,JM-Metabolic__GN0_2165 +1,JM-Metabolic__GN0_2169,JM-Metabolic__GN0_2169,Feist_11661_P41,K20,iTru7_207_12,CTCATCAG,iTru5_18_G,CCACATTG,Feist_11661,JM-Metabolic__GN0_2169 +1,JM-Metabolic__GN0_2172,JM-Metabolic__GN0_2172,Feist_11661_P41,M20,iTru7_208_01,ATGACGTC,iTru5_19_G,CTCTATCG,Feist_11661,JM-Metabolic__GN0_2172 +1,JM-Metabolic__GN0_2175,JM-Metabolic__GN0_2175,Feist_11661_P41,O20,iTru7_208_02,AACCTTGG,iTru5_20_G,TGTGTCAG,Feist_11661,JM-Metabolic__GN0_2175 +1,JM-Metabolic__GN0_2183,JM-Metabolic__GN0_2183,Feist_11661_P41_diluted,A22,iTru7_208_03,GTCTTGCA,iTru5_21_G,CGCAACTA,Feist_11661,JM-Metabolic__GN0_2183 +1,JM-Metabolic__GN0_2215,JM-Metabolic__GN0_2215,Feist_11661_P41_diluted,C22,iTru7_208_04,CAAGTGCA,iTru5_22_G,GATCAGAC,Feist_11661,JM-Metabolic__GN0_2215 +1,JM-Metabolic__GN0_2254,JM-Metabolic__GN0_2254,Feist_11661_P41_diluted,E22,iTru7_208_05,TCCGAGTT,iTru5_23_G,ATTCCGCT,Feist_11661,JM-Metabolic__GN0_2254 +1,JM-Metabolic__GN0_2277,JM-Metabolic__GN0_2277,Feist_11661_P41_diluted,G22,iTru7_208_06,ACCTAAGG,iTru5_24_G,ATCCTTCC,Feist_11661,JM-Metabolic__GN0_2277 +1,JM-Metabolic__GN0_2290,JM-Metabolic__GN0_2290,Feist_11661_P41,I22,iTru7_208_07,TTGGACGT,iTru5_13_H,GCTTCACA,Feist_11661,JM-Metabolic__GN0_2290 +1,JM-Metabolic__GN0_2337,JM-Metabolic__GN0_2337,Feist_11661_P41_diluted,K22,iTru7_208_08,GATAGCGA,iTru5_14_H,CTTCGGTT,Feist_11661,JM-Metabolic__GN0_2337 +1,JM-Metabolic__GN0_2317,JM-Metabolic__GN0_2317,Feist_11661_P41_diluted,M22,iTru7_208_09,TTGGTGAG,iTru5_15_H,CATGGATC,Feist_11661,JM-Metabolic__GN0_2317 +1,JM-Metabolic__GN0_2354,JM-Metabolic__GN0_2354,Feist_11661_P41_diluted,O22,iTru7_208_10,AACTGGTG,iTru5_16_H,GTCAACAG,Feist_11661,JM-Metabolic__GN0_2354 +1,JM-Metabolic__GN0_2375,JM-Metabolic__GN0_2375,Feist_11661_P41_diluted,A24,iTru7_208_11,TAGCCGAA,iTru5_17_H,AATTCCGG,Feist_11661,JM-Metabolic__GN0_2375 +1,JM-Metabolic__GN0_2380,JM-Metabolic__GN0_2380,Feist_11661_P41_diluted,C24,iTru7_208_12,TGCGAACT,iTru5_18_H,GGCGAATA,Feist_11661,JM-Metabolic__GN0_2380 +1,JM-Metabolic__GN0_2393,JM-Metabolic__GN0_2393,Feist_11661_P41_diluted,E24,iTru7_209_01,GACTTAGG,iTru5_19_H,AGGAGGTT,Feist_11661,JM-Metabolic__GN0_2393 +1,JM-Metabolic__GN0_2404,JM-Metabolic__GN0_2404,Feist_11661_P41_diluted,G24,iTru7_209_02,ACACCAGT,iTru5_20_H,ACTCTGAG,Feist_11661,JM-Metabolic__GN0_2404 +1,5B,5B,Gerwick_tubes,I24,iTru7_209_03,CCTGATTG,iTru5_21_H,GCCTTCTT,Gerwick_6123,5B +1,6A,6A,Gerwick_tubes,K24,iTru7_209_04,TTGTGTGC,iTru5_22_H,TGGACCAT,Gerwick_6123,6A +1,BLANK_41_12G,BLANK_41_12G,Feist_11661_P41,M24,iTru7_209_05,TACCACAG,iTru5_23_H,GCATAGTC,Gerwick_6123,BLANK.41.12G +1,BLANK_41_12H,BLANK_41_12H,Feist_11661_P41,O24,iTru7_209_06,ATTCGAGG,iTru5_24_H,TACACACG,Feist_11661,BLANK.41.12H +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Deoxyribose_PALE_ALE__MG1655_BOP27_4_14,Feist_11661_P42,B1,iTru7_209_07,GCACGTAA,iTru5_101_A,AACAACCG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_14 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Deoxyribose_PALE_ALE__MG1655_BOP27_4_23,Feist_11661_P42,D1,iTru7_209_08,GTGTGACA,iTru5_102_A,AAGCCTGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_23 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Deoxyribose_PALE_ALE__MG1655_BOP27_4_48,Feist_11661_P42,F1,iTru7_209_09,CTGGTTCT,iTru5_103_A,AAGGACCA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_4_48 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Deoxyribose_PALE_ALE__MG1655_BOP27_6_21,Feist_11661_P42,H1,iTru7_209_10,ACTGTGTC,iTru5_104_A,ACAACGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_21 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Deoxyribose_PALE_ALE__MG1655_BOP27_6_35,Feist_11661_P42,J1,iTru7_209_11,CCATACGT,iTru5_105_A,ACGAACGA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_6_35 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Deoxyribose_PALE_ALE__MG1655_BOP27_10_13,Feist_11661_P42,L1,iTru7_209_12,GGTACTAC,iTru5_106_A,ACGTCCAA,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_13 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Deoxyribose_PALE_ALE__MG1655_BOP27_10_28,Feist_11661_P42,N1,iTru7_210_01,CAGTCCAA,iTru5_107_A,ACTGGTGT,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_28 +1,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Deoxyribose_PALE_ALE__MG1655_BOP27_10_51,Feist_11661_P42,P1,iTru7_210_02,TCGTAGTC,iTru5_108_A,AGATCGTC,Feist_11661,Deoxyribose PALE ALE _MG1655_BOP27_10_51 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Deoxyribose_PALE_ALE__MG1655_Lib4_18_19,Feist_11661_P42,B3,iTru7_210_03,TCGAGTGA,iTru5_109_A,AGCGAGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_19 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Deoxyribose_PALE_ALE__MG1655_Lib4_18_59,Feist_11661_P42,D3,iTru7_210_04,TGTAGCCA,iTru5_110_A,AGGATAGC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_59 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Deoxyribose_PALE_ALE__MG1655_Lib4_18_35,Feist_11661_P42,F3,iTru7_210_05,TGCAGGTA,iTru5_111_A,AGGTGTTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_18_35 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Deoxyribose_PALE_ALE__MG1655_Lib4_20_16,Feist_11661_P42,H3,iTru7_210_06,CTAGGTGA,iTru5_112_A,AGTCTTGG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Deoxyribose_PALE_ALE__MG1655_Lib4_20_43,Feist_11661_P42,J3,iTru7_210_07,CTCCATGT,iTru5_101_B,GGTTGGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_43 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Deoxyribose_PALE_ALE__MG1655_Lib4_20_71,Feist_11661_P42,L3,iTru7_210_08,CTTACAGC,iTru5_102_B,GGAGGAAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_20_71 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Deoxyribose_PALE_ALE__MG1655_Lib4_22_16,Feist_11661_P42,N3,iTru7_210_09,CGTATTCG,iTru5_103_B,GTAAGGTG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_16 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Deoxyribose_PALE_ALE__MG1655_Lib4_22_28,Feist_11661_P42,P3,iTru7_210_10,ATTCTGGC,iTru5_104_B,GGTGTACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Deoxyribose_PALE_ALE__MG1655_Lib4_22_52,Feist_11661_P42,B5,iTru7_210_11,TACCAGGA,iTru5_105_B,GGATGTAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_22_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Deoxyribose_PALE_ALE__MG1655_Lib4_24_9,Feist_11661_P42,D5,iTru7_210_12,TACATCGG,iTru5_106_B,GTCCTGTT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_9 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Deoxyribose_PALE_ALE__MG1655_Lib4_24_24,Feist_11661_P42,F5,iTru7_301_01,GTGGTGTT,iTru5_107_B,GTACCACA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_24 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Deoxyribose_PALE_ALE__MG1655_Lib4_24_52,Feist_11661_P42,H5,iTru7_301_02,CGCATGAT,iTru5_108_B,GATCTCAG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_24_52 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Deoxyribose_PALE_ALE__MG1655_Lib4_26_6,Feist_11661_P42,J5,iTru7_301_03,AGTCGACA,iTru5_109_B,GAGCTCTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Deoxyribose_PALE_ALE__MG1655_Lib4_26_27,Feist_11661_P42,L5,iTru7_301_04,GTGAGCTT,iTru5_110_B,TACTAGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_27 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Deoxyribose_PALE_ALE__MG1655_Lib4_26_69,Feist_11661_P42,N5,iTru7_301_05,GACATTCC,iTru5_111_B,GCACACAA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_26_69 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Deoxyribose_PALE_ALE__MG1655_Lib4_28_13,Feist_11661_P42,P5,iTru7_301_06,AGTTCGTC,iTru5_112_B,GAATCACC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_13 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Deoxyribose_PALE_ALE__MG1655_Lib4_28_28,Feist_11661_P42,B7,iTru7_301_07,TAATGCCG,iTru5_101_C,AACAGCGA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_28 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Deoxyribose_PALE_ALE__MG1655_Lib4_28_53,Feist_11661_P42,D7,iTru7_301_08,CGACCATT,iTru5_102_C,AAGCGACT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_28_53 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Deoxyribose_PALE_ALE__MG1655_Lib4_30_7,Feist_11661_P42,F7,iTru7_301_09,CTGAAGCT,iTru5_103_C,AAGGCGTA,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_7 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Deoxyribose_PALE_ALE__MG1655_Lib4_30_22,Feist_11661_P42,H7,iTru7_301_10,TTGAGGCA,iTru5_104_C,ACACCGAT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_22 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Deoxyribose_PALE_ALE__MG1655_Lib4_30_60,Feist_11661_P42,J7,iTru7_301_11,GATCGAGT,iTru5_105_C,ACGAATCC,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_30_60 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Deoxyribose_PALE_ALE__MG1655_Lib4_32_6,Feist_11661_P42,L7,iTru7_301_12,ATACTCCG,iTru5_106_C,ACTACGGT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_6 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Deoxyribose_PALE_ALE__MG1655_Lib4_32_20,Feist_11661_P42,N7,iTru7_302_01,AAGTCCGT,iTru5_107_C,AGAAGCCT,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_20 +1,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Deoxyribose_PALE_ALE__MG1655_Lib4_32_56,Feist_11661_P42,P7,iTru7_302_02,TAGCGTCT,iTru5_108_C,AGATTGCG,Feist_11661,Deoxyribose PALE ALE _MG1655_Lib4_32_56 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_24,Feist_11661_P42,B9,iTru7_302_03,TGACGCAT,iTru5_109_C,AGCGTGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_57,Feist_11661_P42,D9,iTru7_302_04,AGCGTGTT,iTru5_110_C,AGGCTGAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_1_69,Feist_11661_P42,F9,iTru7_302_05,TGCACCAA,iTru5_111_C,AGGTTCCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_1_69 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_23,Feist_11661_P42,H9,iTru7_302_06,ATCACACG,iTru5_112_C,AGTGACCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_50,Feist_11661_P42,J9,iTru7_302_07,ATGCCTGT,iTru5_101_D,GGTTAGCT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_50 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_3_61,Feist_11661_P42,L9,iTru7_302_08,ACCTGACT,iTru5_102_D,GTAGCGTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_3_61 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_22,Feist_11661_P42,N9,iTru7_302_09,GCTTCGAA,iTru5_103_D,GGACTACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_22 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_36,Feist_11661_P42,P9,iTru7_302_10,CGGTCATA,iTru5_104_D,TGGTTCGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_36 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_5_46,Feist_11661_P42,B11,iTru7_302_11,GTTAGACG,iTru5_105_D,GGAGTCTT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_5_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_23,Feist_11661_P42,D11,iTru7_302_12,TCTAACGC,iTru5_106_D,GGATTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_41,Feist_11661_P42,F11,iTru7_303_01,ATAGCGGT,iTru5_107_D,TCGGATTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_7_51,Feist_11661_P42,H11,iTru7_303_02,GGACCTAT,iTru5_108_D,GAGCAATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_7_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_25,Feist_11661_P42,J11,iTru7_303_03,CGATGCTT,iTru5_109_D,GATCCACT,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_58,Feist_11661_P42,L11,iTru7_303_04,GAGCTTGT,iTru5_110_D,GAAGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_58 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_17_64,Feist_11661_P42,N11,iTru7_303_05,GTGAAGTG,iTru5_111_D,GCCACTTA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_17_64 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_25,Feist_11661_P42,P11,iTru7_303_06,GAGTGGTT,iTru5_112_D,TCCATTGC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_55,Feist_11661_P42,B13,iTru7_303_07,TGATACGC,iTru5_101_E,AACAGTCC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_55 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_19_63,Feist_11661_P42,D13,iTru7_303_08,AGCAGATG,iTru5_102_E,AAGCTCAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_19_63 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_23,Feist_11661_P42,F13,iTru7_303_09,CCAGTGTT,iTru5_103_E,AAGTCCTC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_23 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_46,Feist_11661_P42,H13,iTru7_303_10,ATTCCTCC,iTru5_104_E,ACACTCTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_46 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_21_51,Feist_11661_P42,J13,iTru7_303_11,CTAACTCG,iTru5_105_E,ACGGTACA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_21_51 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_25,Feist_11661_P42,L13,iTru7_303_12,GATGAGAC,iTru5_106_E,ACTCCTAC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_25 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_49,Feist_11661_P42,N13,iTru7_304_01,TCAGGCTT,iTru5_107_E,AGAGGATG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_49 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_29_57,Feist_11661_P42,P13,iTru7_304_02,GTTCTCGT,iTru5_108_E,AGCCGTAA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_29_57 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_24,Feist_11661_P42,B15,iTru7_304_03,ATCGATCG,iTru5_109_E,AGCTTCAG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_24 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_42,Feist_11661_P42,D15,iTru7_304_04,CCTCAGTT,iTru5_110_E,AGGTAGGA,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_42 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_31_62,Feist_11661_P42,F15,iTru7_304_05,ACTGCTAG,iTru5_111_E,AGTACACG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_31_62 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_21,Feist_11661_P42,H15,iTru7_304_06,TCCGTGAA,iTru5_112_E,AGTGCATC,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_21 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_41,Feist_11661_P42,J15,iTru7_304_07,GGATTCGT,iTru5_101_F,TTGGACTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_41 +1,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,AB5075_AZM_TALE_in_MHB_A_baumannii_AB5075_WT_33_50,Feist_11661_P42,L15,iTru7_304_08,GGTCAGAT,iTru5_102_F,GTCGATTG,Feist_11661,AB5075 AZM TALE in MHB_A. baumannii AB5075_WT_33_50 +1,JM-Metabolic__GN02514,JM-Metabolic__GN02514,Feist_11661_P42,N15,iTru7_304_09,TCGTGGAT,iTru5_103_F,GGCATTCT,Feist_11661,JM-Metabolic__GN02514 +1,JM-Metabolic__GN02529,JM-Metabolic__GN02529,Feist_11661_P42_diluted,P15,iTru7_304_10,CGTGTGTA,iTru5_104_F,TGGTATCC,Feist_11661,JM-Metabolic__GN02529 +1,JM-Metabolic__GN02531,JM-Metabolic__GN02531,Feist_11661_P42_diluted,B17,iTru7_304_11,GTGTCTGA,iTru5_105_F,GGCAAGTT,Feist_11661,JM-Metabolic__GN02531 +1,JM-Metabolic__GN02567,JM-Metabolic__GN02567,Feist_11661_P42,D17,iTru7_304_12,GAATCGTG,iTru5_106_F,GTCTGAGT,Feist_11661,JM-Metabolic__GN02567 +1,JM-Metabolic__GN02590,JM-Metabolic__GN02590,Feist_11661_P42_diluted,F17,iTru7_305_01,GCGATAGT,iTru5_107_F,TCTACGCA,Feist_11661,JM-Metabolic__GN02590 +1,JM-Metabolic__GN02657,JM-Metabolic__GN02657,Feist_11661_P42_diluted,H17,iTru7_305_02,GGCTATTG,iTru5_108_F,GAGGCATT,Feist_11661,JM-Metabolic__GN02657 +1,JM-Metabolic__GN02748,JM-Metabolic__GN02748,Feist_11661_P42,J17,iTru7_305_03,AGTTACGG,iTru5_109_F,GCTAAGGA,Feist_11661,JM-Metabolic__GN02748 +1,JM-Metabolic__GN02766,JM-Metabolic__GN02766,Feist_11661_P42_diluted,L17,iTru7_305_04,CGTACGAA,iTru5_110_F,GCCAGAAT,Feist_11661,JM-Metabolic__GN02766 +1,JM-Metabolic__GN02769,JM-Metabolic__GN02769,Feist_11661_P42_diluted,N17,iTru7_305_05,ACCACGAT,iTru5_111_F,TAAGTGGC,Feist_11661,JM-Metabolic__GN02769 +1,JM-Metabolic__GN02787,JM-Metabolic__GN02787,Feist_11661_P42_diluted,P17,iTru7_305_06,GATTACCG,iTru5_112_F,GCAATGAG,Feist_11661,JM-Metabolic__GN02787 +1,JM-Metabolic__GN03132,JM-Metabolic__GN03132,Feist_11661_P42,B19,iTru7_305_07,GAGATACG,iTru5_101_G,AACTGAGG,Feist_11661,JM-Metabolic__GN03132 +1,JM-Metabolic__GN03218,JM-Metabolic__GN03218,Feist_11661_P42_diluted,D19,iTru7_305_08,CGACGTTA,iTru5_102_G,AAGGAAGG,Feist_11661,JM-Metabolic__GN03218 +1,JM-Metabolic__GN03252,JM-Metabolic__GN03252,Feist_11661_P42_diluted,F19,iTru7_305_09,GAGATGTC,iTru5_103_G,AATGGTCG,Feist_11661,JM-Metabolic__GN03252 +1,JM-Metabolic__GN03409,JM-Metabolic__GN03409,Feist_11661_P42_diluted,H19,iTru7_305_10,GATTGGAG,iTru5_104_G,ACAGCAAG,Feist_11661,JM-Metabolic__GN03409 +1,JM-Metabolic__GN04014,JM-Metabolic__GN04014,Feist_11661_P42_diluted,J19,iTru7_305_11,GCAATTCG,iTru5_105_G,ACGTATGG,Feist_11661,JM-Metabolic__GN04014 +1,JM-Metabolic__GN04094,JM-Metabolic__GN04094,Feist_11661_P42_diluted,L19,iTru7_305_12,CGTCAATG,iTru5_106_G,ACTGCACT,Feist_11661,JM-Metabolic__GN04094 +1,JM-Metabolic__GN04255,JM-Metabolic__GN04255,Feist_11661_P42_diluted,N19,iTru7_401_01,ATGCACGA,iTru5_107_G,AGAGTCCA,Feist_11661,JM-Metabolic__GN04255 +1,JM-Metabolic__GN04306,JM-Metabolic__GN04306,Feist_11661_P42_diluted,P19,iTru7_401_02,ATCGCCAT,iTru5_108_G,AGCCTATC,Feist_11661,JM-Metabolic__GN04306 +1,JM-Metabolic__GN04428,JM-Metabolic__GN04428,Feist_11661_P42_diluted,B21,iTru7_401_03,TCTCGCAA,iTru5_109_G,AGGAACAC,Feist_11661,JM-Metabolic__GN04428 +1,JM-Metabolic__GN04488,JM-Metabolic__GN04488,Feist_11661_P42_diluted,D21,iTru7_401_04,ACGACAGA,iTru5_110_G,AGGTCTGT,Feist_11661,JM-Metabolic__GN04488 +1,JM-Metabolic__GN04540,JM-Metabolic__GN04540,Feist_11661_P42_diluted,F21,iTru7_401_05,TTACGGCT,iTru5_111_G,AGTATGCC,Feist_11661,JM-Metabolic__GN04540 +1,JM-Metabolic__GN04563,JM-Metabolic__GN04563,Feist_11661_P42_diluted,H21,iTru7_401_06,GAGGACTT,iTru5_112_G,AGTTCGCA,Feist_11661,JM-Metabolic__GN04563 +1,JM-Metabolic__GN04612,JM-Metabolic__GN04612,Feist_11661_P42_diluted,J21,iTru7_401_07,GGCATACT,iTru5_101_H,TGGAAGCA,Feist_11661,JM-Metabolic__GN04612 +1,JM-Metabolic__GN04665,JM-Metabolic__GN04665,Feist_11661_P42_diluted,L21,iTru7_401_08,CGTAGGTT,iTru5_102_H,GTCAGTCA,Feist_11661,JM-Metabolic__GN04665 +1,JM-Metabolic__GN04682,JM-Metabolic__GN04682,Feist_11661_P42_diluted,N21,iTru7_401_09,ATATGCGC,iTru5_103_H,GTAACCGA,Feist_11661,JM-Metabolic__GN04682 +1,JM-Metabolic__GN05002,JM-Metabolic__GN05002,Feist_11661_P42_diluted,P21,iTru7_401_10,GGATGTAG,iTru5_104_H,GTTATGGC,Feist_11661,JM-Metabolic__GN05002 +1,JM-Metabolic__GN05109,JM-Metabolic__GN05109,Feist_11661_P42_diluted,B23,iTru7_401_11,CCTGTCAT,iTru5_105_H,GTAAGCAC,Feist_11661,JM-Metabolic__GN05109 +1,JM-Metabolic__GN05128,JM-Metabolic__GN05128,Feist_11661_P42_diluted,D23,iTru7_401_12,TGCTCATG,iTru5_106_H,GGAATGTC,Feist_11661,JM-Metabolic__GN05128 +1,JM-Metabolic__GN05367,JM-Metabolic__GN05367,Feist_11661_P42_diluted,F23,iTru7_402_01,TGAAGACG,iTru5_107_H,GAGAAGGT,Feist_11661,JM-Metabolic__GN05367 +1,JM-Metabolic__GN05377,JM-Metabolic__GN05377,Feist_11661_P42_diluted,H23,iTru7_402_02,GTTACGCA,iTru5_108_H,GAGTAGAG,Feist_11661,JM-Metabolic__GN05377 +1,7A,7A,Gerwick_tubes,J23,iTru7_402_03,ACTCAGAC,iTru5_109_H,GCATTGGT,Gerwick_6123,7A +1,8A,8A,Gerwick_tubes,L23,iTru7_402_04,GTCCACAT,iTru5_110_H,TCCAGCAA,Gerwick_6123,8A +1,BLANK_42_12G,BLANK_42_12G,Feist_11661_P42,N23,iTru7_402_05,CGCTAGTA,iTru5_111_H,GAATCCGT,Feist_11661,BLANK.42.12G +1,BLANK_42_12H,BLANK_42_12H,Feist_11661_P42,P23,iTru7_402_06,GAATCCGA,iTru5_112_H,TACATCGG,Feist_11661,BLANK.42.12H +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0326,Feist_11661_P43,B2,iTru7_402_07,GAGACGAT,iTru5_113_A,ATAACGCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0326 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0327,Feist_11661_P43,D2,iTru7_402_08,TAAGTGGC,iTru5_114_A,ATGACAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0327 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0328,Feist_11661_P43,F2,iTru7_402_09,ACTGAGGT,iTru5_115_A,CAACACAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0328 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0329,Feist_11661_P43,H2,iTru7_402_10,TGTACCGT,iTru5_116_A,CACCAGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0329 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0330,Feist_11661_P43,J2,iTru7_402_11,AGCAAGCA,iTru5_117_A,CAGAGTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0330 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0352,Feist_11661_P43,L2,iTru7_402_12,TCTCGTGT,iTru5_118_A,CCGATGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0352 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0353,Feist_11661_P43,N2,iTru7_115_01,CAAGGTCT,iTru5_119_A,CCTTCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0353 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0354,Feist_11661_P43,P2,iTru7_115_02,TAGACGTG,iTru5_120_A,CGGTAATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0354 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0355,Feist_11661_P43,B4,iTru7_115_03,TGAGCTAG,iTru5_121_A,CTAGGTTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0355 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0356,Feist_11661_P43,D4,iTru7_115_04,CTGACACA,iTru5_122_A,CTCGGTAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0356 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0357,Feist_11661_P43,F4,iTru7_115_05,ACGGTCTT,iTru5_123_A,CTGTGGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0357 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0364,Feist_11661_P43,H4,iTru7_115_06,GCTGTTGT,iTru5_124_A,GTACGATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0364 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0366,Feist_11661_P43,J4,iTru7_115_07,CACTAGCT,iTru5_113_B,TCTGTCGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0366 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0367,Feist_11661_P43,L4,iTru7_115_08,TGGTACAG,iTru5_114_B,GAATGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0367 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0368,Feist_11661_P43,N4,iTru7_115_09,AGCACTTC,iTru5_115_B,GTGTGTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0368 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0369,Feist_11661_P43,P4,iTru7_115_10,GCATACAG,iTru5_116_B,GGTTGAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0369 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0370,Feist_11661_P43,B6,iTru7_115_11,CTTAGGAC,iTru5_117_B,GGCTCAAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0370 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0371,Feist_11661_P43,D6,iTru7_211_01,GCTTCTTG,iTru5_118_B,TTCGCCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0371 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0372,Feist_11661_P43,F6,iTru7_101_01,ACGTTACC,iTru5_119_B,GTCCTTGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0372 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0373,Feist_11661_P43,H6,iTru7_101_02,CTGTGTTG,iTru5_120_B,TAACGTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0373 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0374,Feist_11661_P43,J6,iTru7_101_03,TGAGGTGT,iTru5_121_B,GAGACCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0374 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0375,Feist_11661_P43,L6,iTru7_101_04,GATCCATG,iTru5_122_B,GATCAAGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0375 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0376,Feist_11661_P43,N6,iTru7_101_05,GCCTATCA,iTru5_123_B,GCAACCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0376 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0377,Feist_11661_P43,P6,iTru7_101_06,AACAACCG,iTru5_124_B,AAGGAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0377 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0378,Feist_11661_P43,B8,iTru7_101_07,ACTCGTTG,iTru5_113_C,ATCGGAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0378 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0380,Feist_11661_P43,D8,iTru7_101_08,CCTATGGT,iTru5_114_C,ATGCGCTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0380 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0381,Feist_11661_P43,F8,iTru7_101_09,TGTACACC,iTru5_115_C,CAACCGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0381 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0382,Feist_11661_P43,H8,iTru7_101_10,GTATGCTG,iTru5_116_C,CACTTCAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0382 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0383,Feist_11661_P43,J8,iTru7_101_11,TGATGTCC,iTru5_117_C,CAGCTAGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0383 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0384,Feist_11661_P43,L8,iTru7_101_12,GTCCTTCT,iTru5_118_C,CCGTTATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0384 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0385,Feist_11661_P43,N8,iTru7_102_01,ATAAGGCG,iTru5_119_C,CGAACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0385 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0386,Feist_11661_P43,P8,iTru7_102_02,CTTACCTG,iTru5_120_C,CGTAGATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0386 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0387,Feist_11661_P43,B10,iTru7_102_03,CGTTGCAA,iTru5_121_C,CTATGCCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0387 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0388,Feist_11661_P43,D10,iTru7_102_04,GATTCAGC,iTru5_122_C,CTGATGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0388 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0389,Feist_11661_P43,F10,iTru7_102_05,TCACGTTC,iTru5_123_C,CTTCCTTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0389 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0390,Feist_11661_P43,H10,iTru7_102_06,TGTGCGTT,iTru5_124_C,GTCTCATC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0390 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0391,Feist_11661_P43,J10,iTru7_102_07,TAGTTGCG,iTru5_113_D,GCGCATAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0391 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0392,Feist_11661_P43,L10,iTru7_102_08,AAGAGCCA,iTru5_114_D,GAAGATCC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0392 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0393,Feist_11661_P43,N10,iTru7_102_09,ACAGCTCA,iTru5_115_D,GTTGGCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0393 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0394,Feist_11661_P43,P10,iTru7_102_10,GTTAAGGC,iTru5_116_D,GTGAATGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0394 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0395,Feist_11661_P43,B12,iTru7_102_11,AAGCCACA,iTru5_117_D,GTATCGAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0395 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0396,Feist_11661_P43,D12,iTru7_102_12,ACACGGTT,iTru5_118_D,TGCAAGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0396 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0397,Feist_11661_P43,F12,iTru7_103_01,CAGCGATT,iTru5_119_D,GAGTGTGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0397 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0398,Feist_11661_P43,H12,iTru7_103_02,TAGTGACC,iTru5_120_D,TAAGCGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0398 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0399,Feist_11661_P43,J12,iTru7_103_03,CGAGACTA,iTru5_121_D,TAGCAGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0399 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0400,Feist_11661_P43,L12,iTru7_103_04,GACATGGT,iTru5_122_D,GACTACGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0400 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0401,Feist_11661_P43,N12,iTru7_103_05,GCATGTCT,iTru5_123_D,GACGTCAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0401 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0402,Feist_11661_P43,P12,iTru7_103_06,ACTCCATC,iTru5_124_D,AAGAGGCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0402 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0403,Feist_11661_P43,B14,iTru7_103_07,TGTGACTG,iTru5_113_E,ATCGTCTC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0403 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0404,Feist_11661_P43,D14,iTru7_103_08,CGAAGAAC,iTru5_114_E,ATGGCGAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0404 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0405,Feist_11661_P43,F14,iTru7_103_09,GGTGTCTT,iTru5_115_E,CAAGAAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0405 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0406,Feist_11661_P43,H14,iTru7_103_10,AAGAAGGC,iTru5_116_E,CAGAACTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0406 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0407,Feist_11661_P43,J14,iTru7_103_11,AGGTTCGA,iTru5_117_E,CAGGTAAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0407 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0408,Feist_11661_P43,L14,iTru7_103_12,CATGTTCC,iTru5_118_E,CCTACCTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0408 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0409,Feist_11661_P43,N14,iTru7_104_01,GTGCCATA,iTru5_119_E,CGAAGTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0409 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0417,Feist_11661_P43,P14,iTru7_104_02,CCTTGTAG,iTru5_120_E,CGTCTTCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0417 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0418,Feist_11661_P43,B16,iTru7_104_03,GCTGGATT,iTru5_121_E,CTCAAGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0418 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0419,Feist_11661_P43,D16,iTru7_104_04,TAACGAGG,iTru5_122_E,CTGCCATA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0419 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0420,Feist_11661_P43,F16,iTru7_104_05,ATGGTTGC,iTru5_123_E,CTTGCTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0420 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0421,Feist_11661_P43,H16,iTru7_104_06,CCTATACC,iTru5_124_E,GTCTGCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0421 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0473,Feist_11661_P43,J16,iTru7_104_07,TTAGGTCG,iTru5_113_F,GCTACTCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0473 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0474,Feist_11661_P43,L16,iTru7_104_08,GCAAGATC,iTru5_114_F,TACAGAGC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0474 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0483,Feist_11661_P43,N16,iTru7_104_09,AGAGCCTT,iTru5_115_F,GGTCGTAT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0483 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0484,Feist_11661_P43,P16,iTru7_104_10,GCAATGGA,iTru5_116_F,GTCGTTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0484 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0485,Feist_11661_P43,B18,iTru7_104_11,CTGGAGTA,iTru5_117_F,TTCACGGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0485 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0486,Feist_11661_P43,D18,iTru7_104_12,GAACATCG,iTru5_118_F,TGCTTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0486 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0516,Feist_11661_P43,F18,iTru7_105_01,GCACAACT,iTru5_119_F,TCTTACGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0516 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0517,Feist_11661_P43,H18,iTru7_105_02,TTCTCTCG,iTru5_120_F,TCCTCATG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0517 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0518,Feist_11661_P43,J18,iTru7_105_03,AACGGTCA,iTru5_121_F,GATGTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0518 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0519,Feist_11661_P43,L18,iTru7_105_04,ACAGACCT,iTru5_122_F,GAAGTGCT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0519 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0520,Feist_11661_P43,N18,iTru7_105_05,TCTCTTCC,iTru5_123_F,TCACTCGA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0520 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0521,Feist_11661_P43,P18,iTru7_105_06,AGTGTTGG,iTru5_124_F,ACGCAGTA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0521 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0522,Feist_11661_P43,B20,iTru7_105_07,TGGCATGT,iTru5_113_G,ATCTCCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0522 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0523,Feist_11661_P43,D20,iTru7_105_08,AGAAGCGT,iTru5_114_G,ATGTGGAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0523 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0524,Feist_11661_P43,F20,iTru7_105_09,AGCGGAAT,iTru5_115_G,CAAGCCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0524 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,JM-MEC__Staphylococcus_aureusstrain_BERTI-B0525,Feist_11661_P43,H20,iTru7_105_10,TAACCGGT,iTru5_116_G,CAGACGTT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-B0525 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08624,Feist_11661_P43,J20,iTru7_105_11,CATGGAAC,iTru5_117_G,CATACTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08624 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,JM-MEC__Staphylococcus_aureusstrain_BERTI-R08704,Feist_11661_P43,L20,iTru7_105_12,ATGGTCCA,iTru5_118_G,CCTGTCAA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R08704 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,JM-MEC__Staphylococcus_aureusstrain_BERTI-R10727,Feist_11661_P43,N20,iTru7_106_01,CTTCTGAG,iTru5_119_G,CGAGTTAG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R10727 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11044,Feist_11661_P43,P20,iTru7_106_02,AACCGAAG,iTru5_120_G,CTAACCTG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11044 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11078,Feist_11661_P43,B22,iTru7_106_03,TTCGTACC,iTru5_121_G,CTCCTAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11078 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11101,Feist_11661_P43,D22,iTru7_106_04,CTGTTAGG,iTru5_122_G,CTGTACCA,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11101 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11102,Feist_11661_P43,F22,iTru7_106_05,CACAAGTC,iTru5_123_G,GCTACAAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11102 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11103,Feist_11661_P43,H22,iTru7_106_06,TCTTGACG,iTru5_124_G,GTTCTTCG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11103 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11135,Feist_11661_P43,J22,iTru7_106_07,CGTCTTGT,iTru5_113_H,GAGAGTAC,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11135 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11153,Feist_11661_P43,L22,iTru7_106_08,CGTGATCA,iTru5_114_H,GACACAGT,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11153 +1,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,JM-MEC__Staphylococcus_aureusstrain_BERTI-R11154,Feist_11661_P43,N22,iTru7_106_09,CCAAGTTG,iTru5_115_H,TTGCTTGG,Feist_11661,JM-MEC__Staphylococcus aureusstrain BERTI-R11154 +1,JM-Metabolic__GN02424,JM-Metabolic__GN02424,Feist_11661_P43,P22,iTru7_106_10,GTACCTTG,iTru5_116_H,GTAGTACC,Feist_11661,JM-Metabolic__GN02424 +1,JM-Metabolic__GN02446,JM-Metabolic__GN02446,Feist_11661_P43,B24,iTru7_106_11,GACTATGC,iTru5_117_H,TTCGGCTA,Feist_11661,JM-Metabolic__GN02446 +1,JM-Metabolic__GN02449,JM-Metabolic__GN02449,Feist_11661_P43,D24,iTru7_106_12,TGGATCAC,iTru5_118_H,TGCACTTG,Feist_11661,JM-Metabolic__GN02449 +1,JM-Metabolic__GN02487,JM-Metabolic__GN02487,Feist_11661_P43_diluted,F24,iTru7_107_01,CTCTGGTT,iTru5_119_H,TAGAACGC,Feist_11661,JM-Metabolic__GN02487 +1,JM-Metabolic__GN02501,JM-Metabolic__GN02501,Feist_11661_P43,H24,iTru7_107_02,GTTCATGG,iTru5_120_H,GATTGTCC,Feist_11661,JM-Metabolic__GN02501 +1,ISB,ISB,Gerwick_tubes,J24,iTru7_107_03,GCTGTAAG,iTru5_121_H,GATGCTAC,Gerwick_6123,ISB +1,GFR,GFR,Gerwick_tubes,L24,iTru7_107_04,GTCGAAGA,iTru5_122_H,GAACGGTT,Gerwick_6123,GFR +1,BLANK_43_12G,BLANK_43_12G,Feist_11661_P43,N24,iTru7_107_05,GAGCTCAA,iTru5_123_H,CTCTTGTC,Feist_11661,BLANK.43.12G +1,BLANK_43_12H,BLANK_43_12H,Feist_11661_P43,P24,iTru7_107_06,TGAACCTG,iTru5_124_H,AACGCCTT,Feist_11661,BLANK.43.12H +1,RMA_KHP_rpoS_Mage_Q97D,RMA_KHP_rpoS_Mage_Q97D,,,12,CTTGTAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97D +1,RMA_KHP_rpoS_Mage_Q97L,RMA_KHP_rpoS_Mage_Q97L,,,13,AGTCAAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97L +1,RMA_KHP_rpoS_Mage_Q97N,RMA_KHP_rpoS_Mage_Q97N,,,14,AGTTCCAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97N +1,RMA_KHP_rpoS_Mage_Q97E,RMA_KHP_rpoS_Mage_Q97E,,,15,ATGTCAAT,U1,TATAGCGT,Feist_11661,RMA_KHP_rpoS Mage Q97E +1,JBI_KHP_HGL_021,JBI_KHP_HGL_021,,,1,ATCACGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_021 +1,JBI_KHP_HGL_022,JBI_KHP_HGL_022,,,2,CGATGTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_022 +1,JBI_KHP_HGL_023,JBI_KHP_HGL_023,,,3,TTAGGCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_023 +1,JBI_KHP_HGL_024,JBI_KHP_HGL_024,,,4,TGACCAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_024 +1,JBI_KHP_HGL_025,JBI_KHP_HGL_025,,,5,ACAGTGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_025 +1,JBI_KHP_HGL_026,JBI_KHP_HGL_026,,,6,GCCAATAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_026 +1,JBI_KHP_HGL_027,JBI_KHP_HGL_027,,,7,CAGATCAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_027 +1,JBI_KHP_HGL_028_Amitesh_soxR,JBI_KHP_HGL_028_Amitesh_soxR,,,8,ACTTGAAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_028_Amitesh_soxR +1,JBI_KHP_HGL_029_Amitesh_oxyR,JBI_KHP_HGL_029_Amitesh_oxyR,,,9,GATCAGAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_029_Amitesh_oxyR +1,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,JBI_KHP_HGL_030_Amitesh_soxR_oxyR,,,10,TAGCTTAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_030_Amitesh_soxR_oxyR +1,JBI_KHP_HGL_031_Amitesh_rpoS,JBI_KHP_HGL_031_Amitesh_rpoS,,,11,GGCTACAT,U2,ATAGAGGT,Feist_11661,JBI_KHP_HGL_031_Amitesh_rpoS +1,BLANK1_1A,BLANK1_1A,NYU_BMS_Melanoma_13059_P1,A1,iTru7_107_09,GCCTTGTT,iTru5_01_A,ACCGACAA,NYU_BMS_Melanoma_13059,BLANK1.1A +1,BLANK1_1B,BLANK1_1B,NYU_BMS_Melanoma_13059_P1,C1,iTru7_107_10,AACTTGCC,iTru5_02_A,CTTCGCAA,NYU_BMS_Melanoma_13059,BLANK1.1B +1,BLANK1_1C,BLANK1_1C,NYU_BMS_Melanoma_13059_P1,E1,iTru7_107_11,CAATGTGG,iTru5_03_A,AACACCAC,NYU_BMS_Melanoma_13059,BLANK1.1C +1,BLANK1_1D,BLANK1_1D,NYU_BMS_Melanoma_13059_P1,G1,iTru7_107_12,AAGGCTGA,iTru5_04_A,CGTATCTC,NYU_BMS_Melanoma_13059,BLANK1.1D +1,BLANK1_1E,BLANK1_1E,NYU_BMS_Melanoma_13059_P1,I1,iTru7_108_01,TTACCGAG,iTru5_05_A,GGTACGAA,NYU_BMS_Melanoma_13059,BLANK1.1E +1,BLANK1_1F,BLANK1_1F,NYU_BMS_Melanoma_13059_P1,K1,iTru7_108_02,GTCCTAAG,iTru5_06_A,CGATCGAT,NYU_BMS_Melanoma_13059,BLANK1.1F +1,BLANK1_1G,BLANK1_1G,NYU_BMS_Melanoma_13059_P1,M1,iTru7_108_03,GAAGGTTC,iTru5_07_A,AAGACACC,NYU_BMS_Melanoma_13059,BLANK1.1G +1,BLANK1_1H,BLANK1_1H,NYU_BMS_Melanoma_13059_P1,O1,iTru7_108_04,GAAGAGGT,iTru5_08_A,CATCTGCT,NYU_BMS_Melanoma_13059,BLANK1.1H +1,AP581451B02,AP581451B02,NYU_BMS_Melanoma_13059_P1,A3,iTru7_108_05,TCTGAGAG,iTru5_09_A,CTCTCAGA,NYU_BMS_Melanoma_13059,AP581451B02 +1,EP256645B01,EP256645B01,NYU_BMS_Melanoma_13059_P1,C3,iTru7_108_06,ACCGCATA,iTru5_10_A,TCGTCTGA,NYU_BMS_Melanoma_13059,EP256645B01 +1,EP112567B02,EP112567B02,NYU_BMS_Melanoma_13059_P1,E3,iTru7_108_07,GAAGTACC,iTru5_11_A,CAATAGCC,NYU_BMS_Melanoma_13059,EP112567B02 +1,EP337425B01,EP337425B01,NYU_BMS_Melanoma_13059_P1,G3,iTru7_108_08,CAGGTATC,iTru5_12_A,CATTCGTC,NYU_BMS_Melanoma_13059,EP337425B01 +1,LP127890A01,LP127890A01,NYU_BMS_Melanoma_13059_P1,I3,iTru7_108_09,TCTCTAGG,iTru5_01_B,AGTGGCAA,NYU_BMS_Melanoma_13059,LP127890A01 +1,EP159692B04,EP159692B04,NYU_BMS_Melanoma_13059_P1,K3,iTru7_108_10,AAGCACTG,iTru5_02_B,GTGGTATG,NYU_BMS_Melanoma_13059,EP159692B04 +1,EP987683A01,EP987683A01,NYU_BMS_Melanoma_13059_P1,M3,iTru7_108_11,CCAAGCAA,iTru5_03_B,TGAGCTGT,NYU_BMS_Melanoma_13059,EP987683A01 +1,AP959450A03,AP959450A03,NYU_BMS_Melanoma_13059_P1,O3,iTru7_108_12,TGTTCGAG,iTru5_04_B,CGTCAAGA,NYU_BMS_Melanoma_13059,AP959450A03 +1,SP464350A04,SP464350A04,NYU_BMS_Melanoma_13059_P1,A5,iTru7_109_01,CTCGTCTT,iTru5_05_B,AAGCATCG,NYU_BMS_Melanoma_13059,SP464350A04 +1,C9,C9,NYU_BMS_Melanoma_13059_P1,C5,iTru7_109_02,CGAACTGT,iTru5_06_B,TACTCCAG,NYU_BMS_Melanoma_13059,C9 +1,ep256643b01,ep256643b01,NYU_BMS_Melanoma_13059_P1,E5,iTru7_109_03,CATTCGGT,iTru5_07_B,GATACCTG,NYU_BMS_Melanoma_13059,ep256643b01 +1,EP121011B01,EP121011B01,NYU_BMS_Melanoma_13059_P1,G5,iTru7_109_04,TCGGTTAC,iTru5_08_B,ACCTCTTC,NYU_BMS_Melanoma_13059,EP121011B01 +1,AP616837B04,AP616837B04,NYU_BMS_Melanoma_13059_P1,I5,iTru7_109_05,AAGTCGAG,iTru5_09_B,ACGGACTT,NYU_BMS_Melanoma_13059,AP616837B04 +1,SP506933A04,SP506933A04,NYU_BMS_Melanoma_13059_P1,K5,iTru7_109_06,TATCGGTC,iTru5_10_B,CATGTGTG,NYU_BMS_Melanoma_13059,SP506933A04 +1,EP159695B01,EP159695B01,NYU_BMS_Melanoma_13059_P1,M5,iTru7_109_07,TATTCGCC,iTru5_11_B,TGCCTCAA,NYU_BMS_Melanoma_13059,EP159695B01 +1,EP256644B01,EP256644B01,NYU_BMS_Melanoma_13059_P1,O5,iTru7_109_08,GTATTGGC,iTru5_12_B,ATCTGACC,NYU_BMS_Melanoma_13059,EP256644B01 +1,SP511289A02,SP511289A02,NYU_BMS_Melanoma_13059_P1,A7,iTru7_109_09,AGTCGCTT,iTru5_01_C,CACAGACT,NYU_BMS_Melanoma_13059,SP511289A02 +1,EP305735B04,EP305735B04,NYU_BMS_Melanoma_13059_P1,C7,iTru7_109_10,TGGCACTA,iTru5_02_C,CACTGTAG,NYU_BMS_Melanoma_13059,EP305735B04 +1,SP415030A01,SP415030A01,NYU_BMS_Melanoma_13059_P1,E7,iTru7_109_11,GGTTGTCA,iTru5_03_C,CACAGGAA,NYU_BMS_Melanoma_13059,SP415030A01 +1,AP549681B02,AP549681B02,NYU_BMS_Melanoma_13059_P1,G7,iTru7_109_12,AACCTCCT,iTru5_04_C,CCATGAAC,NYU_BMS_Melanoma_13059,AP549681B02 +1,AP549678B01,AP549678B01,NYU_BMS_Melanoma_13059_P1,I7,iTru7_110_01,ATGACCAG,iTru5_05_C,GCCAATAC,NYU_BMS_Melanoma_13059,AP549678B01 +1,EP260544B04,EP260544B04,NYU_BMS_Melanoma_13059_P1,K7,iTru7_110_02,AACCGTTC,iTru5_06_C,AGCTACCA,NYU_BMS_Melanoma_13059,EP260544B04 +1,EP202452B01,EP202452B01,NYU_BMS_Melanoma_13059_P1,M7,iTru7_110_03,TCCAATCG,iTru5_07_C,AACCGAAC,NYU_BMS_Melanoma_13059,EP202452B01 +1,EP282276B04,EP282276B04,NYU_BMS_Melanoma_13059_P1,O7,iTru7_110_04,CTGCACTT,iTru5_08_C,ATCGCAAC,NYU_BMS_Melanoma_13059,EP282276B04 +1,SP531696A04,SP531696A04,NYU_BMS_Melanoma_13059_P1,A9,iTru7_110_05,CGCTTAAC,iTru5_09_C,GTTGCTGT,NYU_BMS_Melanoma_13059,SP531696A04 +1,SP515443A04,SP515443A04,NYU_BMS_Melanoma_13059_P1,C9,iTru7_110_06,CACCACTA,iTru5_10_C,TCTAGTCC,NYU_BMS_Melanoma_13059,SP515443A04 +1,SP515763A04,SP515763A04,NYU_BMS_Melanoma_13059_P1,E9,iTru7_110_07,ACAGCAAC,iTru5_11_C,GACGAACT,NYU_BMS_Melanoma_13059,SP515763A04 +1,EP184255B04,EP184255B04,NYU_BMS_Melanoma_13059_P1,G9,iTru7_110_08,GGAAGGAT,iTru5_12_C,TTCGTACG,NYU_BMS_Melanoma_13059,EP184255B04 +1,SP503615A02,SP503615A02,NYU_BMS_Melanoma_13059_P1,I9,iTru7_110_09,GGCGTTAT,iTru5_01_D,CGACACTT,NYU_BMS_Melanoma_13059,SP503615A02 +1,EP260543B04,EP260543B04,NYU_BMS_Melanoma_13059_P1,K9,iTru7_110_10,CTGTTGAC,iTru5_02_D,AGACGCTA,NYU_BMS_Melanoma_13059,EP260543B04 +1,EP768748A04,EP768748A04,NYU_BMS_Melanoma_13059_P1,M9,iTru7_110_11,GTCATCGA,iTru5_03_D,TGACAACC,NYU_BMS_Melanoma_13059,EP768748A04 +1,AP309872B03,AP309872B03,NYU_BMS_Melanoma_13059_P1,O9,iTru7_110_12,TGACTTCG,iTru5_04_D,GGTACTTC,NYU_BMS_Melanoma_13059,AP309872B03 +1,AP568785B04,AP568785B04,NYU_BMS_Melanoma_13059_P1,A11,iTru7_111_01,CGATAGAG,iTru5_05_D,CTGTATGC,NYU_BMS_Melanoma_13059,AP568785B04 +1,EP721390A04,EP721390A04,NYU_BMS_Melanoma_13059_P1,C11,iTru7_111_02,TTCGTTGG,iTru5_06_D,TCGACAAG,NYU_BMS_Melanoma_13059,EP721390A04 +1,EP940013A01,EP940013A01,NYU_BMS_Melanoma_13059_P1,E11,iTru7_111_03,TGGAGAGT,iTru5_07_D,GCTGAATC,NYU_BMS_Melanoma_13059,EP940013A01 +1,EP291979B04,EP291979B04,NYU_BMS_Melanoma_13059_P1,G11,iTru7_111_04,TCAGACGA,iTru5_08_D,AGTTGTGC,NYU_BMS_Melanoma_13059,EP291979B04 +1,EP182065B04,EP182065B04,NYU_BMS_Melanoma_13059_P1,I11,iTru7_111_05,GACGAATG,iTru5_09_D,TGTCGACT,NYU_BMS_Melanoma_13059,EP182065B04 +1,EP128904B02,EP128904B02,NYU_BMS_Melanoma_13059_P1,K11,iTru7_111_06,CATGAGGA,iTru5_10_D,AAGGCTCT,NYU_BMS_Melanoma_13059,EP128904B02 +1,EP915769A04,EP915769A04,NYU_BMS_Melanoma_13059_P1,M11,iTru7_111_07,CGGTTGTT,iTru5_11_D,CCTAACAG,NYU_BMS_Melanoma_13059,EP915769A04 +1,SP464352A03,SP464352A03,NYU_BMS_Melanoma_13059_P1,O11,iTru7_111_08,TCCGTATG,iTru5_12_D,AAGACGAG,NYU_BMS_Melanoma_13059,SP464352A03 +1,SP365864A04,SP365864A04,NYU_BMS_Melanoma_13059_P1,A13,iTru7_111_09,TGTGGTAC,iTru5_01_E,GACTTGTG,NYU_BMS_Melanoma_13059,SP365864A04 +1,SP511294A04,SP511294A04,NYU_BMS_Melanoma_13059_P1,C13,iTru7_111_10,AGAACGAG,iTru5_02_E,CAACTCCA,NYU_BMS_Melanoma_13059,SP511294A04 +1,EP061002B01,EP061002B01,NYU_BMS_Melanoma_13059_P1,E13,iTru7_111_11,CTTCGTTC,iTru5_03_E,TGTTCCGT,NYU_BMS_Melanoma_13059,EP061002B01 +1,SP410793A01,SP410793A01,NYU_BMS_Melanoma_13059_P1,G13,iTru7_111_12,CCAATAGG,iTru5_04_E,ACCGCTAT,NYU_BMS_Melanoma_13059,SP410793A01 +1,SP232077A04,SP232077A04,NYU_BMS_Melanoma_13059_P1,I13,iTru7_112_01,ACCATCCA,iTru5_05_E,CTTAGGAC,NYU_BMS_Melanoma_13059,SP232077A04 +1,EP128910B01,EP128910B01,NYU_BMS_Melanoma_13059_P1,K13,iTru7_112_02,CACACATG,iTru5_06_E,TATGACCG,NYU_BMS_Melanoma_13059,EP128910B01 +1,AP531397B04,AP531397B04,NYU_BMS_Melanoma_13059_P1,M13,iTru7_112_03,CTTGTCGA,iTru5_07_E,AGCTAGTG,NYU_BMS_Melanoma_13059,AP531397B04 +1,EP043583B01,EP043583B01,NYU_BMS_Melanoma_13059_P1,O13,iTru7_112_04,AGTCTCAC,iTru5_08_E,GAACGAAG,NYU_BMS_Melanoma_13059,EP043583B01 +1,EP230245B01,EP230245B01,NYU_BMS_Melanoma_13059_P1,A15,iTru7_112_05,AGTTGGCT,iTru5_09_E,CGTCTAAC,NYU_BMS_Melanoma_13059,EP230245B01 +1,EP606652B04,EP606652B04,NYU_BMS_Melanoma_13059_P1,C15,iTru7_112_06,CCGGAATT,iTru5_10_E,AACCAGAG,NYU_BMS_Melanoma_13059,EP606652B04 +1,EP207041B01,EP207041B01,NYU_BMS_Melanoma_13059_P1,E15,iTru7_112_07,CAGTGAAG,iTru5_11_E,CGCCTTAT,NYU_BMS_Melanoma_13059,EP207041B01 +1,EP727972A04,EP727972A04,NYU_BMS_Melanoma_13059_P1,G15,iTru7_112_08,CCTACTGA,iTru5_12_E,CTCGTTCT,NYU_BMS_Melanoma_13059,EP727972A04 +1,EP291980B04,EP291980B04,NYU_BMS_Melanoma_13059_P1,I15,iTru7_112_09,TGTGAAGC,iTru5_01_F,GTGAGACT,NYU_BMS_Melanoma_13059,EP291980B04 +1,EP087938B02,EP087938B02,NYU_BMS_Melanoma_13059_P1,K15,iTru7_112_10,GTCTGATC,iTru5_02_F,AACACGCT,NYU_BMS_Melanoma_13059,EP087938B02 +1,SP471496A04,SP471496A04,NYU_BMS_Melanoma_13059_P1,M15,iTru7_112_11,TTCAGGAG,iTru5_03_F,CCTAGAGA,NYU_BMS_Melanoma_13059,SP471496A04 +1,SP573823A04,SP573823A04,NYU_BMS_Melanoma_13059_P1,O15,iTru7_112_12,ACGATGAC,iTru5_04_F,TTCCAGGT,NYU_BMS_Melanoma_13059,SP573823A04 +1,EP393718B01,EP393718B01,NYU_BMS_Melanoma_13059_P1,A17,iTru7_113_01,CGTTATGC,iTru5_05_F,TCAGCCTT,NYU_BMS_Melanoma_13059,EP393718B01 +1,SP612496A01,SP612496A01,NYU_BMS_Melanoma_13059_P1,C17,iTru7_113_02,GATACTGG,iTru5_06_F,AGCCAACT,NYU_BMS_Melanoma_13059,SP612496A01 +1,EP032410B02,EP032410B02,NYU_BMS_Melanoma_13059_P1,E17,iTru7_113_03,CTACTTGG,iTru5_07_F,CTAGCTCA,NYU_BMS_Melanoma_13059,EP032410B02 +1,EP073216B01,EP073216B01,NYU_BMS_Melanoma_13059_P1,G17,iTru7_113_04,CATACCAC,iTru5_08_F,GGAAGAGA,NYU_BMS_Melanoma_13059,EP073216B01 +1,EP410046B01,EP410046B01,NYU_BMS_Melanoma_13059_P1,I17,iTru7_113_05,ACATTGCG,iTru5_09_F,AACACTGG,NYU_BMS_Melanoma_13059,EP410046B01 +1,SP561451A04,SP561451A04,NYU_BMS_Melanoma_13059_P1,K17,iTru7_113_06,TGATCGGA,iTru5_10_F,ACTATCGC,NYU_BMS_Melanoma_13059,SP561451A04 +1,EP320438B01,EP320438B01,NYU_BMS_Melanoma_13059_P1,M17,iTru7_113_07,AAGTGTCG,iTru5_11_F,ACAACAGC,NYU_BMS_Melanoma_13059,EP320438B01 +1,SP612495A04,SP612495A04,NYU_BMS_Melanoma_13059_P1,O17,iTru7_113_08,GAACGCTT,iTru5_12_F,TGTGGCTT,NYU_BMS_Melanoma_13059,SP612495A04 +1,EP446604B03,EP446604B03,NYU_BMS_Melanoma_13059_P1,A19,iTru7_113_09,TCAAGGAC,iTru5_01_G,GTTCCATG,NYU_BMS_Melanoma_13059,EP446604B03 +1,EP446602B01,EP446602B01,NYU_BMS_Melanoma_13059_P1,C19,iTru7_113_10,TCAACTGG,iTru5_02_G,TGGATGGT,NYU_BMS_Melanoma_13059,EP446602B01 +1,EP182243B02,EP182243B02,NYU_BMS_Melanoma_13059_P1,E19,iTru7_113_11,GGTTGATG,iTru5_03_G,GCATAACG,NYU_BMS_Melanoma_13059,EP182243B02 +1,EP333541B04,EP333541B04,NYU_BMS_Melanoma_13059_P1,G19,iTru7_113_12,AAGGACAC,iTru5_04_G,TCGAACCT,NYU_BMS_Melanoma_13059,EP333541B04 +1,EP238034B01,EP238034B01,NYU_BMS_Melanoma_13059_P1,I19,iTru7_114_01,TTGATCCG,iTru5_05_G,ACATGCCA,NYU_BMS_Melanoma_13059,EP238034B01 +1,AP298002B02,AP298002B02,NYU_BMS_Melanoma_13059_P1,K19,iTru7_114_02,GGTGATTC,iTru5_06_G,GATCTTGC,NYU_BMS_Melanoma_13059,AP298002B02 +1,EP455759B04,EP455759B04,NYU_BMS_Melanoma_13059_P1,M19,iTru7_114_03,GATTGCTC,iTru5_07_G,GTTAAGCG,NYU_BMS_Melanoma_13059,EP455759B04 +1,EP207042B04,EP207042B04,NYU_BMS_Melanoma_13059_P1,O19,iTru7_114_04,ACCTGGAA,iTru5_08_G,GTCATCGT,NYU_BMS_Melanoma_13059,EP207042B04 +1,LP128479A01,LP128479A01,NYU_BMS_Melanoma_13059_P1,A21,iTru7_114_05,CATCTACG,iTru5_09_G,TCAGACAC,NYU_BMS_Melanoma_13059,LP128479A01 +1,LP128476A01,LP128476A01,NYU_BMS_Melanoma_13059_P1,C21,iTru7_114_06,CCGTATCT,iTru5_10_G,GTCCTAAG,NYU_BMS_Melanoma_13059,LP128476A01 +1,EP316863B03,EP316863B03,NYU_BMS_Melanoma_13059_P1,E21,iTru7_114_07,CGGAATAC,iTru5_11_G,AGACCTTG,NYU_BMS_Melanoma_13059,EP316863B03 +1,C20,C20,NYU_BMS_Melanoma_13059_P1,G21,iTru7_114_08,CTCCTAGA,iTru5_12_G,AGACATGC,NYU_BMS_Melanoma_13059,C20 +1,lp127896a01,lp127896a01,NYU_BMS_Melanoma_13059_P1,I21,iTru7_114_09,TGGTAGCT,iTru5_01_H,TAGCTGAG,NYU_BMS_Melanoma_13059,lp127896a01 +1,SP491907A02,SP491907A02,NYU_BMS_Melanoma_13059_P1,K21,iTru7_114_10,TCGAAGGT,iTru5_02_H,TTCGAAGC,NYU_BMS_Melanoma_13059,SP491907A02 +1,EP182060B03,EP182060B03,NYU_BMS_Melanoma_13059_P1,M21,iTru7_114_11,ACATAGGC,iTru5_03_H,CAGTGCTT,NYU_BMS_Melanoma_13059,EP182060B03 +1,EP422407B01,EP422407B01,NYU_BMS_Melanoma_13059_P1,O21,iTru7_114_12,CTCAGAGT,iTru5_04_H,TAGTGCCA,NYU_BMS_Melanoma_13059,EP422407B01 +1,SP573859A04,SP573859A04,NYU_BMS_Melanoma_13059_P1,A23,iTru7_201_01,CTTGGATG,iTru5_05_H,GATGGAGT,NYU_BMS_Melanoma_13059,SP573859A04 +1,SP584547A02,SP584547A02,NYU_BMS_Melanoma_13059_P1,C23,iTru7_201_02,CAGTTGGA,iTru5_06_H,CCTCGTTA,NYU_BMS_Melanoma_13059,SP584547A02 +1,EP182346B04,EP182346B04,NYU_BMS_Melanoma_13059_P1,E23,iTru7_201_03,GATAGGCT,iTru5_07_H,CGATTGGA,NYU_BMS_Melanoma_13059,EP182346B04 +1,AP668631B04,AP668631B04,NYU_BMS_Melanoma_13059_P1,G23,iTru7_201_04,TTGACAGG,iTru5_08_H,CCAACGAA,NYU_BMS_Melanoma_13059,AP668631B04 +1,EP451428B04,EP451428B04,NYU_BMS_Melanoma_13059_P1,I23,iTru7_201_05,AGAATGCC,iTru5_09_H,AGAAGGAC,NYU_BMS_Melanoma_13059,EP451428B04 +1,LP128538A01,LP128538A01,NYU_BMS_Melanoma_13059_P1,K23,iTru7_201_06,CTACATCC,iTru5_10_H,TGACCGTT,NYU_BMS_Melanoma_13059,LP128538A01 +1,SP490298A02,SP490298A02,NYU_BMS_Melanoma_13059_P1,M23,iTru7_201_07,TCATGGTG,iTru5_11_H,GCGTTAGA,NYU_BMS_Melanoma_13059,SP490298A02 +1,SP573860A01,SP573860A01,NYU_BMS_Melanoma_13059_P1,O23,iTru7_201_08,TACACGCT,iTru5_12_H,TCTAGGAG,NYU_BMS_Melanoma_13059,SP573860A01 +1,EP032412B02,EP032412B02,NYU_BMS_Melanoma_13059_P2,A2,iTru7_201_09,TACGGTTG,iTru5_13_A,GGTATAGG,NYU_BMS_Melanoma_13059,EP032412B02 +1,EP163771B01,EP163771B01,NYU_BMS_Melanoma_13059_P2,C2,iTru7_201_10,GGATACCA,iTru5_14_A,TCCGATCA,NYU_BMS_Melanoma_13059,EP163771B01 +1,LP169879A01,LP169879A01,NYU_BMS_Melanoma_13059_P2,E2,iTru7_201_11,TCGACATC,iTru5_15_A,CGACCTAA,NYU_BMS_Melanoma_13059,LP169879A01 +1,EP729433A02,EP729433A02,NYU_BMS_Melanoma_13059_P2,G2,iTru7_201_12,GTTGTAGC,iTru5_16_A,GACATCTC,NYU_BMS_Melanoma_13059,EP729433A02 +1,EP447940B04,EP447940B04,NYU_BMS_Melanoma_13059_P2,I2,iTru7_202_01,ATACGACC,iTru5_17_A,CCAGTATC,NYU_BMS_Melanoma_13059,EP447940B04 +1,SP584551A08,SP584551A08,NYU_BMS_Melanoma_13059_P2,K2,iTru7_202_02,TTCCAAGG,iTru5_18_A,ACGCTTCT,NYU_BMS_Melanoma_13059,SP584551A08 +1,EP216516B04,EP216516B04,NYU_BMS_Melanoma_13059_P2,M2,iTru7_202_03,TTGCAGAC,iTru5_19_A,AACGCACA,NYU_BMS_Melanoma_13059,EP216516B04 +1,EP023808B02,EP023808B02,NYU_BMS_Melanoma_13059_P2,O2,iTru7_202_04,TGCCATTC,iTru5_20_A,TGATCACG,NYU_BMS_Melanoma_13059,EP023808B02 +1,BLANK2_2A,BLANK2_2A,NYU_BMS_Melanoma_13059_P2,A4,iTru7_202_05,GATGTGTG,iTru5_21_A,GCGTATCA,NYU_BMS_Melanoma_13059,BLANK2.2A +1,BLANK2_2B,BLANK2_2B,NYU_BMS_Melanoma_13059_P2,C4,iTru7_202_06,ACTCTCGA,iTru5_22_A,GTGTCCTT,NYU_BMS_Melanoma_13059,BLANK2.2B +1,BLANK2_2C,BLANK2_2C,NYU_BMS_Melanoma_13059_P2,E4,iTru7_202_07,GAGTCTCT,iTru5_23_A,GGTAACGT,NYU_BMS_Melanoma_13059,BLANK2.2C +1,BLANK2_2D,BLANK2_2D,NYU_BMS_Melanoma_13059_P2,G4,iTru7_202_08,CAACACCT,iTru5_24_A,CGAGAGAA,NYU_BMS_Melanoma_13059,BLANK2.2D +1,BLANK2_2E,BLANK2_2E,NYU_BMS_Melanoma_13059_P2,I4,iTru7_202_09,CAGTCTTC,iTru5_13_B,CATTGACG,NYU_BMS_Melanoma_13059,BLANK2.2E +1,BLANK2_2F,BLANK2_2F,NYU_BMS_Melanoma_13059_P2,K4,iTru7_202_10,GGACTGTT,iTru5_14_B,GGTGATGA,NYU_BMS_Melanoma_13059,BLANK2.2F +1,BLANK2_2G,BLANK2_2G,NYU_BMS_Melanoma_13059_P2,M4,iTru7_202_11,CTTAGTGG,iTru5_15_B,AACCGTGT,NYU_BMS_Melanoma_13059,BLANK2.2G +1,BLANK2_2H,BLANK2_2H,NYU_BMS_Melanoma_13059_P2,O4,iTru7_202_12,ATTGCGTG,iTru5_16_B,CCTATTGG,NYU_BMS_Melanoma_13059,BLANK2.2H +1,SP573843A04,SP573843A04,NYU_BMS_Melanoma_13059_P2,A6,iTru7_203_01,GTAACGAC,iTru5_17_B,TCAGTAGG,NYU_BMS_Melanoma_13059,SP573843A04 +1,EP683835A01,EP683835A01,NYU_BMS_Melanoma_13059_P2,C6,iTru7_203_02,CTTGCTGT,iTru5_18_B,TATGCGGT,NYU_BMS_Melanoma_13059,EP683835A01 +1,SP573824A04,SP573824A04,NYU_BMS_Melanoma_13059_P2,E6,iTru7_203_03,GTTGTTCG,iTru5_19_B,ATGCCTAG,NYU_BMS_Melanoma_13059,SP573824A04 +1,SP335002A04,SP335002A04,NYU_BMS_Melanoma_13059_P2,G6,iTru7_203_04,CGTTGAGT,iTru5_20_B,CTAGCAGT,NYU_BMS_Melanoma_13059,SP335002A04 +1,SP478193A02,SP478193A02,NYU_BMS_Melanoma_13059_P2,I6,iTru7_203_05,TCGAACCA,iTru5_21_B,AGGTCAAC,NYU_BMS_Melanoma_13059,SP478193A02 +1,SP232311A04,SP232311A04,NYU_BMS_Melanoma_13059_P2,K6,iTru7_203_06,AGACCGTA,iTru5_22_B,GAACGTGA,NYU_BMS_Melanoma_13059,SP232311A04 +1,SP415021A02,SP415021A02,NYU_BMS_Melanoma_13059_P2,M6,iTru7_203_07,CAGAGTGT,iTru5_23_B,ATCATGCG,NYU_BMS_Melanoma_13059,SP415021A02 +1,SP231630A02,SP231630A02,NYU_BMS_Melanoma_13059_P2,O6,iTru7_203_08,GACAAGAG,iTru5_24_B,CAACGAGT,NYU_BMS_Melanoma_13059,SP231630A02 +1,SP641029A02,SP641029A02,NYU_BMS_Melanoma_13059_P2,A8,iTru7_203_09,GAACACAC,iTru5_13_C,CGCAATGT,NYU_BMS_Melanoma_13059,SP641029A02 +1,SP232310A04,SP232310A04,NYU_BMS_Melanoma_13059_P2,C8,iTru7_203_10,GCTTAGCT,iTru5_14_C,AACAAGGC,NYU_BMS_Melanoma_13059,SP232310A04 +1,EP617442B01,EP617442B01,NYU_BMS_Melanoma_13059_P2,E8,iTru7_203_11,GAAGGAAG,iTru5_15_C,ACCATGTC,NYU_BMS_Melanoma_13059,EP617442B01 +1,EP587478B04,EP587478B04,NYU_BMS_Melanoma_13059_P2,G8,iTru7_203_12,CAGTTCTG,iTru5_16_C,AATCCAGC,NYU_BMS_Melanoma_13059,EP587478B04 +1,EP447928B04,EP447928B04,NYU_BMS_Melanoma_13059_P2,I8,iTru7_204_01,CAGGAGAT,iTru5_17_C,TTGCAACG,NYU_BMS_Melanoma_13059,EP447928B04 +1,EP587475B04,EP587475B04,NYU_BMS_Melanoma_13059_P2,K8,iTru7_204_02,GTAGCATC,iTru5_18_C,ACCTTCGA,NYU_BMS_Melanoma_13059,EP587475B04 +1,EP675042B01,EP675042B01,NYU_BMS_Melanoma_13059_P2,M8,iTru7_204_03,TCGTTCGT,iTru5_19_C,CATACGGA,NYU_BMS_Melanoma_13059,EP675042B01 +1,EP554513B02,EP554513B02,NYU_BMS_Melanoma_13059_P2,O8,iTru7_204_04,GGCAAGTT,iTru5_20_C,GACCGATA,NYU_BMS_Melanoma_13059,EP554513B02 +1,EP702221B04,EP702221B04,NYU_BMS_Melanoma_13059_P2,A10,iTru7_204_05,ACCATGTG,iTru5_21_C,AAGCTGGT,NYU_BMS_Melanoma_13059,EP702221B04 +1,AP568787B02,AP568787B02,NYU_BMS_Melanoma_13059_P2,C10,iTru7_204_06,CAACGGAT,iTru5_22_C,ACACCTCA,NYU_BMS_Melanoma_13059,AP568787B02 +1,EP054632B01,EP054632B01,NYU_BMS_Melanoma_13059_P2,E10,iTru7_204_07,CAATCGAC,iTru5_23_C,CGGAGTAT,NYU_BMS_Melanoma_13059,EP054632B01 +1,EP121013B01,EP121013B01,NYU_BMS_Melanoma_13059_P2,G10,iTru7_204_08,GTGTTCCT,iTru5_24_C,CTCGACTT,NYU_BMS_Melanoma_13059,EP121013B01 +1,EP649418A02,EP649418A02,NYU_BMS_Melanoma_13059_P2,I10,iTru7_204_09,AGGAACCT,iTru5_13_D,ATCCACGA,NYU_BMS_Melanoma_13059,EP649418A02 +1,EP573313B01,EP573313B01,NYU_BMS_Melanoma_13059_P2,K10,iTru7_204_10,ACCTTCTC,iTru5_14_D,ACAGTTCG,NYU_BMS_Melanoma_13059,EP573313B01 +1,LP154981A01,LP154981A01,NYU_BMS_Melanoma_13059_P2,M10,iTru7_204_11,CCGTAAGA,iTru5_15_D,ACAAGACG,NYU_BMS_Melanoma_13059,LP154981A01 +1,AP470859B01,AP470859B01,NYU_BMS_Melanoma_13059_P2,O10,iTru7_204_12,ATCGGTGT,iTru5_16_D,ATCGTGGT,NYU_BMS_Melanoma_13059,AP470859B01 +1,LP154986A01,LP154986A01,NYU_BMS_Melanoma_13059_P2,A12,iTru7_205_01,AGCTCCTA,iTru5_17_D,AGTCAGGT,NYU_BMS_Melanoma_13059,LP154986A01 +1,AP732307B04,AP732307B04,NYU_BMS_Melanoma_13059_P2,C12,iTru7_205_02,CCTTGATC,iTru5_18_D,CATCAACC,NYU_BMS_Melanoma_13059,AP732307B04 +1,EP533426B03,EP533426B03,NYU_BMS_Melanoma_13059_P2,E12,iTru7_205_03,CCATTCAC,iTru5_19_D,GGTCACTA,NYU_BMS_Melanoma_13059,EP533426B03 +1,EP587476B04,EP587476B04,NYU_BMS_Melanoma_13059_P2,G12,iTru7_205_04,GGACAATC,iTru5_20_D,CGGCATTA,NYU_BMS_Melanoma_13059,EP587476B04 +1,AP696363B02,AP696363B02,NYU_BMS_Melanoma_13059_P2,I12,iTru7_205_05,AAGGCGTT,iTru5_21_D,ACTCGATC,NYU_BMS_Melanoma_13059,AP696363B02 +1,EP587477B04,EP587477B04,NYU_BMS_Melanoma_13059_P2,K12,iTru7_205_06,GCCATAAC,iTru5_22_D,ATAGGTCC,NYU_BMS_Melanoma_13059,EP587477B04 +1,SP683466A02,SP683466A02,NYU_BMS_Melanoma_13059_P2,M12,iTru7_205_07,GAAGTTGG,iTru5_23_D,CAGTCACA,NYU_BMS_Melanoma_13059,SP683466A02 +1,EP554518B04,EP554518B04,NYU_BMS_Melanoma_13059_P2,O12,iTru7_205_08,AGCCAAGT,iTru5_24_D,TAGTGGTG,NYU_BMS_Melanoma_13059,EP554518B04 +1,EP533429B04,EP533429B04,NYU_BMS_Melanoma_13059_P2,A14,iTru7_205_09,TGACTGAC,iTru5_13_E,CTCCTGAA,NYU_BMS_Melanoma_13059,EP533429B04 +1,EP431570B01,EP431570B01,NYU_BMS_Melanoma_13059_P2,C14,iTru7_205_10,CACCTGTT,iTru5_14_E,AATCGCTG,NYU_BMS_Melanoma_13059,EP431570B01 +1,EP202095B04,EP202095B04,NYU_BMS_Melanoma_13059_P2,E14,iTru7_205_11,ATCCGGTA,iTru5_15_E,TGATAGGC,NYU_BMS_Melanoma_13059,EP202095B04 +1,EP504030B04,EP504030B04,NYU_BMS_Melanoma_13059_P2,G14,iTru7_205_12,ATCTGTCC,iTru5_16_E,ATGCGTCA,NYU_BMS_Melanoma_13059,EP504030B04 +1,EP207036B01,EP207036B01,NYU_BMS_Melanoma_13059_P2,I14,iTru7_206_01,CCAAGACT,iTru5_17_E,CAGCATAC,NYU_BMS_Melanoma_13059,EP207036B01 +1,EP393717B01,EP393717B01,NYU_BMS_Melanoma_13059_P2,K14,iTru7_206_02,ATGGCGAA,iTru5_18_E,AAGTGCAG,NYU_BMS_Melanoma_13059,EP393717B01 +1,SP491898A02,SP491898A02,NYU_BMS_Melanoma_13059_P2,M14,iTru7_206_03,GGTAGTGT,iTru5_19_E,GTATTCCG,NYU_BMS_Melanoma_13059,SP491898A02 +1,EP484973B04,EP484973B04,NYU_BMS_Melanoma_13059_P2,O14,iTru7_206_04,TCGCTGTT,iTru5_20_E,GTGATCCA,NYU_BMS_Melanoma_13059,EP484973B04 +1,EP479794B02,EP479794B02,NYU_BMS_Melanoma_13059_P2,A16,iTru7_206_05,AACGTGGA,iTru5_21_E,TATGGCAC,NYU_BMS_Melanoma_13059,EP479794B02 +1,EP554515B04,EP554515B04,NYU_BMS_Melanoma_13059_P2,C16,iTru7_206_06,AACGACGT,iTru5_22_E,ACCATAGG,NYU_BMS_Melanoma_13059,EP554515B04 +1,SP631994A04,SP631994A04,NYU_BMS_Melanoma_13059_P2,E16,iTru7_206_07,AACAGGAC,iTru5_23_E,CTCCAATC,NYU_BMS_Melanoma_13059,SP631994A04 +1,EP921593A04,EP921593A04,NYU_BMS_Melanoma_13059_P2,G16,iTru7_206_08,AAGCGCAT,iTru5_24_E,AGATACGG,NYU_BMS_Melanoma_13059,EP921593A04 +1,AP787247B04,AP787247B04,NYU_BMS_Melanoma_13059_P2,I16,iTru7_206_09,CACTGACA,iTru5_13_F,TCGATGAC,NYU_BMS_Melanoma_13059,AP787247B04 +1,EP090129B04,EP090129B04,NYU_BMS_Melanoma_13059_P2,K16,iTru7_206_10,AGGTCACT,iTru5_14_F,CCAACACT,NYU_BMS_Melanoma_13059,EP090129B04 +1,EP447975B02,EP447975B02,NYU_BMS_Melanoma_13059_P2,M16,iTru7_206_11,GTCACTGT,iTru5_15_F,CTTCACTG,NYU_BMS_Melanoma_13059,EP447975B02 +1,EP212214B01,EP212214B01,NYU_BMS_Melanoma_13059_P2,O16,iTru7_206_12,ATGCCAAC,iTru5_16_F,CGATGTTC,NYU_BMS_Melanoma_13059,EP212214B01 +1,EP410042B01,EP410042B01,NYU_BMS_Melanoma_13059_P2,A18,iTru7_207_01,CACGTTGT,iTru5_17_F,ACCGGTTA,NYU_BMS_Melanoma_13059,EP410042B01 +1,SP404409A02,SP404409A02,NYU_BMS_Melanoma_13059_P2,C18,iTru7_207_02,TATTCCGG,iTru5_18_F,CTTACAGC,NYU_BMS_Melanoma_13059,SP404409A02 +1,SP247340A04,SP247340A04,NYU_BMS_Melanoma_13059_P2,E18,iTru7_207_03,TGCTTCCA,iTru5_19_F,TGGCTCTT,NYU_BMS_Melanoma_13059,SP247340A04 +1,AP029018B01,AP029018B01,NYU_BMS_Melanoma_13059_P2,G18,iTru7_207_04,GTCTAGGT,iTru5_20_F,AAGACCGT,NYU_BMS_Melanoma_13059,AP029018B01 +1,EP872341A01,EP872341A01,NYU_BMS_Melanoma_13059_P2,I18,iTru7_207_05,GTTCAACC,iTru5_21_F,GGACATCA,NYU_BMS_Melanoma_13059,EP872341A01 +1,AP062219B03,AP062219B03,NYU_BMS_Melanoma_13059_P2,K18,iTru7_207_06,CGCAATCT,iTru5_22_F,TTGGTGCA,NYU_BMS_Melanoma_13059,AP062219B03 +1,EP790020A02,EP790020A02,NYU_BMS_Melanoma_13059_P2,M18,iTru7_207_07,TTAAGCGG,iTru5_23_F,AAGCGTTC,NYU_BMS_Melanoma_13059,EP790020A02 +1,EP808112A04,EP808112A04,NYU_BMS_Melanoma_13059_P2,O18,iTru7_207_08,TGCTTGGT,iTru5_24_F,ACTCTCCA,NYU_BMS_Melanoma_13059,EP808112A04 +1,SP404403A02,SP404403A02,NYU_BMS_Melanoma_13059_P2,A20,iTru7_207_09,ACACACTC,iTru5_13_G,GAACCTTC,NYU_BMS_Melanoma_13059,SP404403A02 +1,EP073160B01,EP073160B01,NYU_BMS_Melanoma_13059_P2,C20,iTru7_207_10,CCACTTCT,iTru5_14_G,GGAACATG,NYU_BMS_Melanoma_13059,EP073160B01 +1,EP012991B03,EP012991B03,NYU_BMS_Melanoma_13059_P2,E20,iTru7_207_11,TTGGTCTC,iTru5_15_G,GCCTATGT,NYU_BMS_Melanoma_13059,EP012991B03 +1,SP317297A02,SP317297A02,NYU_BMS_Melanoma_13059_P2,G20,iTru7_207_12,CTCATCAG,iTru5_16_G,CCGTAACT,NYU_BMS_Melanoma_13059,SP317297A02 +1,EP656055A04,EP656055A04,NYU_BMS_Melanoma_13059_P2,I20,iTru7_208_01,ATGACGTC,iTru5_17_G,CGGATCAA,NYU_BMS_Melanoma_13059,EP656055A04 +1,EP649623A01,EP649623A01,NYU_BMS_Melanoma_13059_P2,K20,iTru7_208_02,AACCTTGG,iTru5_18_G,CCACATTG,NYU_BMS_Melanoma_13059,EP649623A01 +1,EP790019A01,EP790019A01,NYU_BMS_Melanoma_13059_P2,M20,iTru7_208_03,GTCTTGCA,iTru5_19_G,CTCTATCG,NYU_BMS_Melanoma_13059,EP790019A01 +1,SP257519A04,SP257519A04,NYU_BMS_Melanoma_13059_P2,O20,iTru7_208_04,CAAGTGCA,iTru5_20_G,TGTGTCAG,NYU_BMS_Melanoma_13059,SP257519A04 +1,EP808104A01,EP808104A01,NYU_BMS_Melanoma_13059_P2,A22,iTru7_208_05,TCCGAGTT,iTru5_21_G,CGCAACTA,NYU_BMS_Melanoma_13059,EP808104A01 +1,EP808106A01,EP808106A01,NYU_BMS_Melanoma_13059_P2,C22,iTru7_208_06,ACCTAAGG,iTru5_22_G,GATCAGAC,NYU_BMS_Melanoma_13059,EP808106A01 +1,SP231629A02,SP231629A02,NYU_BMS_Melanoma_13059_P2,E22,iTru7_208_07,TTGGACGT,iTru5_23_G,ATTCCGCT,NYU_BMS_Melanoma_13059,SP231629A02 +1,EP675044A01,EP675044A01,NYU_BMS_Melanoma_13059_P2,G22,iTru7_208_08,GATAGCGA,iTru5_24_G,ATCCTTCC,NYU_BMS_Melanoma_13059,EP675044A01 +1,EP657260A01,EP657260A01,NYU_BMS_Melanoma_13059_P2,I22,iTru7_208_09,TTGGTGAG,iTru5_13_H,GCTTCACA,NYU_BMS_Melanoma_13059,EP657260A01 +1,EP808110A04,EP808110A04,NYU_BMS_Melanoma_13059_P2,K22,iTru7_208_10,AACTGGTG,iTru5_14_H,CTTCGGTT,NYU_BMS_Melanoma_13059,EP808110A04 +1,AP032413B04,AP032413B04,NYU_BMS_Melanoma_13059_P2,M22,iTru7_208_11,TAGCCGAA,iTru5_15_H,CATGGATC,NYU_BMS_Melanoma_13059,AP032413B04 +1,EP843906A04,EP843906A04,NYU_BMS_Melanoma_13059_P2,O22,iTru7_208_12,TGCGAACT,iTru5_16_H,GTCAACAG,NYU_BMS_Melanoma_13059,EP843906A04 +1,AP173305B04,AP173305B04,NYU_BMS_Melanoma_13059_P2,A24,iTru7_209_01,GACTTAGG,iTru5_17_H,AATTCCGG,NYU_BMS_Melanoma_13059,AP173305B04 +1,SP231628A02,SP231628A02,NYU_BMS_Melanoma_13059_P2,C24,iTru7_209_02,ACACCAGT,iTru5_18_H,GGCGAATA,NYU_BMS_Melanoma_13059,SP231628A02 +1,AP173301B04,AP173301B04,NYU_BMS_Melanoma_13059_P2,E24,iTru7_209_03,CCTGATTG,iTru5_19_H,AGGAGGTT,NYU_BMS_Melanoma_13059,AP173301B04 +1,SP404405A02,SP404405A02,NYU_BMS_Melanoma_13059_P2,G24,iTru7_209_04,TTGTGTGC,iTru5_20_H,ACTCTGAG,NYU_BMS_Melanoma_13059,SP404405A02 +1,EP649653A04,EP649653A04,NYU_BMS_Melanoma_13059_P2,I24,iTru7_209_05,TACCACAG,iTru5_21_H,GCCTTCTT,NYU_BMS_Melanoma_13059,EP649653A04 +1,EP718687A04,EP718687A04,NYU_BMS_Melanoma_13059_P2,K24,iTru7_209_06,ATTCGAGG,iTru5_22_H,TGGACCAT,NYU_BMS_Melanoma_13059,EP718687A04 +1,AP905750A02,AP905750A02,NYU_BMS_Melanoma_13059_P2,M24,iTru7_209_07,GCACGTAA,iTru5_23_H,GCATAGTC,NYU_BMS_Melanoma_13059,AP905750A02 +1,EP738468A01,EP738468A01,NYU_BMS_Melanoma_13059_P2,O24,iTru7_209_08,GTGTGACA,iTru5_24_H,TACACACG,NYU_BMS_Melanoma_13059,EP738468A01 +1,C6,C6,NYU_BMS_Melanoma_13059_P3,B1,iTru7_209_09,CTGGTTCT,iTru5_101_A,AACAACCG,NYU_BMS_Melanoma_13059,C6 +1,EP890157A02,EP890157A02,NYU_BMS_Melanoma_13059_P3,D1,iTru7_209_10,ACTGTGTC,iTru5_102_A,AAGCCTGA,NYU_BMS_Melanoma_13059,EP890157A02 +1,SP353893A02,SP353893A02,NYU_BMS_Melanoma_13059_P3,F1,iTru7_209_11,CCATACGT,iTru5_103_A,AAGGACCA,NYU_BMS_Melanoma_13059,SP353893A02 +1,EP944059A02,EP944059A02,NYU_BMS_Melanoma_13059_P3,H1,iTru7_209_12,GGTACTAC,iTru5_104_A,ACAACGTG,NYU_BMS_Melanoma_13059,EP944059A02 +1,EP970005A01,EP970005A01,NYU_BMS_Melanoma_13059_P3,J1,iTru7_210_01,CAGTCCAA,iTru5_105_A,ACGAACGA,NYU_BMS_Melanoma_13059,EP970005A01 +1,EP927461A04,EP927461A04,NYU_BMS_Melanoma_13059_P3,L1,iTru7_210_02,TCGTAGTC,iTru5_106_A,ACGTCCAA,NYU_BMS_Melanoma_13059,EP927461A04 +1,EP808111A03,EP808111A03,NYU_BMS_Melanoma_13059_P3,N1,iTru7_210_03,TCGAGTGA,iTru5_107_A,ACTGGTGT,NYU_BMS_Melanoma_13059,EP808111A03 +1,EP927459A04,EP927459A04,NYU_BMS_Melanoma_13059_P3,P1,iTru7_210_04,TGTAGCCA,iTru5_108_A,AGATCGTC,NYU_BMS_Melanoma_13059,EP927459A04 +1,SP317293A02,SP317293A02,NYU_BMS_Melanoma_13059_P3,B3,iTru7_210_05,TGCAGGTA,iTru5_109_A,AGCGAGAT,NYU_BMS_Melanoma_13059,SP317293A02 +1,SP235186A04,SP235186A04,NYU_BMS_Melanoma_13059_P3,D3,iTru7_210_06,CTAGGTGA,iTru5_110_A,AGGATAGC,NYU_BMS_Melanoma_13059,SP235186A04 +1,SP399724A04,SP399724A04,NYU_BMS_Melanoma_13059_P3,F3,iTru7_210_07,CTCCATGT,iTru5_111_A,AGGTGTTG,NYU_BMS_Melanoma_13059,SP399724A04 +1,EP738469A01,EP738469A01,NYU_BMS_Melanoma_13059_P3,H3,iTru7_210_08,CTTACAGC,iTru5_112_A,AGTCTTGG,NYU_BMS_Melanoma_13059,EP738469A01 +1,SP284095A03,SP284095A03,NYU_BMS_Melanoma_13059_P3,J3,iTru7_210_09,CGTATTCG,iTru5_101_B,GGTTGGTA,NYU_BMS_Melanoma_13059,SP284095A03 +1,C5,C5,NYU_BMS_Melanoma_13059_P3,L3,iTru7_210_10,ATTCTGGC,iTru5_102_B,GGAGGAAT,NYU_BMS_Melanoma_13059,C5 +1,EP337325B04,EP337325B04,NYU_BMS_Melanoma_13059_P3,N3,iTru7_210_11,TACCAGGA,iTru5_103_B,GTAAGGTG,NYU_BMS_Melanoma_13059,EP337325B04 +1,EP759450A04,EP759450A04,NYU_BMS_Melanoma_13059_P3,P3,iTru7_210_12,TACATCGG,iTru5_104_B,GGTGTACA,NYU_BMS_Melanoma_13059,EP759450A04 +1,BLANK3_3A,BLANK3_3A,NYU_BMS_Melanoma_13059_P3,B5,iTru7_301_01,GTGGTGTT,iTru5_105_B,GGATGTAG,NYU_BMS_Melanoma_13059,BLANK3.3A +1,BLANK3_3B,BLANK3_3B,NYU_BMS_Melanoma_13059_P3,D5,iTru7_301_02,CGCATGAT,iTru5_106_B,GTCCTGTT,NYU_BMS_Melanoma_13059,BLANK3.3B +1,BLANK3_3C,BLANK3_3C,NYU_BMS_Melanoma_13059_P3,F5,iTru7_301_03,AGTCGACA,iTru5_107_B,GTACCACA,NYU_BMS_Melanoma_13059,BLANK3.3C +1,BLANK3_3D,BLANK3_3D,NYU_BMS_Melanoma_13059_P3,H5,iTru7_301_04,GTGAGCTT,iTru5_108_B,GATCTCAG,NYU_BMS_Melanoma_13059,BLANK3.3D +1,BLANK3_3E,BLANK3_3E,NYU_BMS_Melanoma_13059_P3,J5,iTru7_301_05,GACATTCC,iTru5_109_B,GAGCTCTA,NYU_BMS_Melanoma_13059,BLANK3.3E +1,BLANK3_3F,BLANK3_3F,NYU_BMS_Melanoma_13059_P3,L5,iTru7_301_06,AGTTCGTC,iTru5_110_B,TACTAGCG,NYU_BMS_Melanoma_13059,BLANK3.3F +1,BLANK3_3G,BLANK3_3G,NYU_BMS_Melanoma_13059_P3,N5,iTru7_301_07,TAATGCCG,iTru5_111_B,GCACACAA,NYU_BMS_Melanoma_13059,BLANK3.3G +1,BLANK3_3H,BLANK3_3H,NYU_BMS_Melanoma_13059_P3,P5,iTru7_301_08,CGACCATT,iTru5_112_B,GAATCACC,NYU_BMS_Melanoma_13059,BLANK3.3H +1,AP006367B02,AP006367B02,NYU_BMS_Melanoma_13059_P3,B7,iTru7_301_09,CTGAAGCT,iTru5_101_C,AACAGCGA,NYU_BMS_Melanoma_13059,AP006367B02 +1,EP929277A02,EP929277A02,NYU_BMS_Melanoma_13059_P3,D7,iTru7_301_10,TTGAGGCA,iTru5_102_C,AAGCGACT,NYU_BMS_Melanoma_13059,EP929277A02 +1,AP324642B04,AP324642B04,NYU_BMS_Melanoma_13059_P3,F7,iTru7_301_11,GATCGAGT,iTru5_103_C,AAGGCGTA,NYU_BMS_Melanoma_13059,AP324642B04 +1,EP786631A04,EP786631A04,NYU_BMS_Melanoma_13059_P3,H7,iTru7_301_12,ATACTCCG,iTru5_104_C,ACACCGAT,NYU_BMS_Melanoma_13059,EP786631A04 +1,EP657385A04,EP657385A04,NYU_BMS_Melanoma_13059_P3,J7,iTru7_302_01,AAGTCCGT,iTru5_105_C,ACGAATCC,NYU_BMS_Melanoma_13059,EP657385A04 +1,SP235189A01,SP235189A01,NYU_BMS_Melanoma_13059_P3,L7,iTru7_302_02,TAGCGTCT,iTru5_106_C,ACTACGGT,NYU_BMS_Melanoma_13059,SP235189A01 +1,EP448041B04,EP448041B04,NYU_BMS_Melanoma_13059_P3,N7,iTru7_302_03,TGACGCAT,iTru5_107_C,AGAAGCCT,NYU_BMS_Melanoma_13059,EP448041B04 +1,SP231631A02,SP231631A02,NYU_BMS_Melanoma_13059_P3,P7,iTru7_302_04,AGCGTGTT,iTru5_108_C,AGATTGCG,NYU_BMS_Melanoma_13059,SP231631A02 +1,SP280481A02,SP280481A02,NYU_BMS_Melanoma_13059_P3,B9,iTru7_302_05,TGCACCAA,iTru5_109_C,AGCGTGTA,NYU_BMS_Melanoma_13059,SP280481A02 +1,AP032412B04,AP032412B04,NYU_BMS_Melanoma_13059_P3,D9,iTru7_302_06,ATCACACG,iTru5_110_C,AGGCTGAA,NYU_BMS_Melanoma_13059,AP032412B04 +1,EP649737A03,EP649737A03,NYU_BMS_Melanoma_13059_P3,F9,iTru7_302_07,ATGCCTGT,iTru5_111_C,AGGTTCCT,NYU_BMS_Melanoma_13059,EP649737A03 +1,AP967057A04,AP967057A04,NYU_BMS_Melanoma_13059_P3,H9,iTru7_302_08,ACCTGACT,iTru5_112_C,AGTGACCT,NYU_BMS_Melanoma_13059,AP967057A04 +1,EP876243A04,EP876243A04,NYU_BMS_Melanoma_13059_P3,J9,iTru7_302_09,GCTTCGAA,iTru5_101_D,GGTTAGCT,NYU_BMS_Melanoma_13059,EP876243A04 +1,SP229387A04,SP229387A04,NYU_BMS_Melanoma_13059_P3,L9,iTru7_302_10,CGGTCATA,iTru5_102_D,GTAGCGTA,NYU_BMS_Melanoma_13059,SP229387A04 +1,EP667743A04,EP667743A04,NYU_BMS_Melanoma_13059_P3,N9,iTru7_302_11,GTTAGACG,iTru5_103_D,GGACTACT,NYU_BMS_Melanoma_13059,EP667743A04 +1,SP246941A01,SP246941A01,NYU_BMS_Melanoma_13059_P3,P9,iTru7_302_12,TCTAACGC,iTru5_104_D,TGGTTCGA,NYU_BMS_Melanoma_13059,SP246941A01 +1,AP745799A04,AP745799A04,NYU_BMS_Melanoma_13059_P3,B11,iTru7_303_01,ATAGCGGT,iTru5_105_D,GGAGTCTT,NYU_BMS_Melanoma_13059,AP745799A04 +1,SP205732A02,SP205732A02,NYU_BMS_Melanoma_13059_P3,D11,iTru7_303_02,GGACCTAT,iTru5_106_D,GGATTCAC,NYU_BMS_Melanoma_13059,SP205732A02 +1,SP230382A04,SP230382A04,NYU_BMS_Melanoma_13059_P3,F11,iTru7_303_03,CGATGCTT,iTru5_107_D,TCGGATTC,NYU_BMS_Melanoma_13059,SP230382A04 +1,SP230380A02,SP230380A02,NYU_BMS_Melanoma_13059_P3,H11,iTru7_303_04,GAGCTTGT,iTru5_108_D,GAGCAATC,NYU_BMS_Melanoma_13059,SP230380A02 +1,SP230381A01,SP230381A01,NYU_BMS_Melanoma_13059_P3,J11,iTru7_303_05,GTGAAGTG,iTru5_109_D,GATCCACT,NYU_BMS_Melanoma_13059,SP230381A01 +1,SP205754A01,SP205754A01,NYU_BMS_Melanoma_13059_P3,L11,iTru7_303_06,GAGTGGTT,iTru5_110_D,GAAGACTG,NYU_BMS_Melanoma_13059,SP205754A01 +1,EP606662B04,EP606662B04,NYU_BMS_Melanoma_13059_P3,N11,iTru7_303_07,TGATACGC,iTru5_111_D,GCCACTTA,NYU_BMS_Melanoma_13059,EP606662B04 +1,AP780167B02,AP780167B02,NYU_BMS_Melanoma_13059_P3,P11,iTru7_303_08,AGCAGATG,iTru5_112_D,TCCATTGC,NYU_BMS_Melanoma_13059,AP780167B02 +1,EP447927B04,EP447927B04,NYU_BMS_Melanoma_13059_P3,B13,iTru7_303_09,CCAGTGTT,iTru5_101_E,AACAGTCC,NYU_BMS_Melanoma_13059,EP447927B04 +1,C18,C18,NYU_BMS_Melanoma_13059_P3,D13,iTru7_303_10,ATTCCTCC,iTru5_102_E,AAGCTCAC,NYU_BMS_Melanoma_13059,C18 +1,LP191039A01,LP191039A01,NYU_BMS_Melanoma_13059_P3,F13,iTru7_303_11,CTAACTCG,iTru5_103_E,AAGTCCTC,NYU_BMS_Melanoma_13059,LP191039A01 +1,EP606663B04,EP606663B04,NYU_BMS_Melanoma_13059_P3,H13,iTru7_303_12,GATGAGAC,iTru5_104_E,ACACTCTG,NYU_BMS_Melanoma_13059,EP606663B04 +1,EP573296B01,EP573296B01,NYU_BMS_Melanoma_13059_P3,J13,iTru7_304_01,TCAGGCTT,iTru5_105_E,ACGGTACA,NYU_BMS_Melanoma_13059,EP573296B01 +1,EP447926B04,EP447926B04,NYU_BMS_Melanoma_13059_P3,L13,iTru7_304_02,GTTCTCGT,iTru5_106_E,ACTCCTAC,NYU_BMS_Melanoma_13059,EP447926B04 +1,LP127767A01,LP127767A01,NYU_BMS_Melanoma_13059_P3,N13,iTru7_304_03,ATCGATCG,iTru5_107_E,AGAGGATG,NYU_BMS_Melanoma_13059,LP127767A01 +1,EP479266B04,EP479266B04,NYU_BMS_Melanoma_13059_P3,P13,iTru7_304_04,CCTCAGTT,iTru5_108_E,AGCCGTAA,NYU_BMS_Melanoma_13059,EP479266B04 +1,LP128543A01,LP128543A01,NYU_BMS_Melanoma_13059_P3,B15,iTru7_304_05,ACTGCTAG,iTru5_109_E,AGCTTCAG,NYU_BMS_Melanoma_13059,LP128543A01 +1,EP479270B03,EP479270B03,NYU_BMS_Melanoma_13059_P3,D15,iTru7_304_06,TCCGTGAA,iTru5_110_E,AGGTAGGA,NYU_BMS_Melanoma_13059,EP479270B03 +1,EP921594A04,EP921594A04,NYU_BMS_Melanoma_13059_P3,F15,iTru7_304_07,GGATTCGT,iTru5_111_E,AGTACACG,NYU_BMS_Melanoma_13059,EP921594A04 +1,EP554501B04,EP554501B04,NYU_BMS_Melanoma_13059_P3,H15,iTru7_304_08,GGTCAGAT,iTru5_112_E,AGTGCATC,NYU_BMS_Melanoma_13059,EP554501B04 +1,EP542577B04,EP542577B04,NYU_BMS_Melanoma_13059_P3,J15,iTru7_304_09,TCGTGGAT,iTru5_101_F,TTGGACTG,NYU_BMS_Melanoma_13059,EP542577B04 +1,EP487995B04,EP487995B04,NYU_BMS_Melanoma_13059_P3,L15,iTru7_304_10,CGTGTGTA,iTru5_102_F,GTCGATTG,NYU_BMS_Melanoma_13059,EP487995B04 +1,EP542578B04,EP542578B04,NYU_BMS_Melanoma_13059_P3,N15,iTru7_304_11,GTGTCTGA,iTru5_103_F,GGCATTCT,NYU_BMS_Melanoma_13059,EP542578B04 +1,EP573310B01,EP573310B01,NYU_BMS_Melanoma_13059_P3,P15,iTru7_304_12,GAATCGTG,iTru5_104_F,TGGTATCC,NYU_BMS_Melanoma_13059,EP573310B01 +1,EP244366B01,EP244366B01,NYU_BMS_Melanoma_13059_P3,B17,iTru7_305_01,GCGATAGT,iTru5_105_F,GGCAAGTT,NYU_BMS_Melanoma_13059,EP244366B01 +1,EP533389B03,EP533389B03,NYU_BMS_Melanoma_13059_P3,D17,iTru7_305_02,GGCTATTG,iTru5_106_F,GTCTGAGT,NYU_BMS_Melanoma_13059,EP533389B03 +1,EP244360B01,EP244360B01,NYU_BMS_Melanoma_13059_P3,F17,iTru7_305_03,AGTTACGG,iTru5_107_F,TCTACGCA,NYU_BMS_Melanoma_13059,EP244360B01 +1,AP911328B01,AP911328B01,NYU_BMS_Melanoma_13059_P3,H17,iTru7_305_04,CGTACGAA,iTru5_108_F,GAGGCATT,NYU_BMS_Melanoma_13059,AP911328B01 +1,AP481403B02,AP481403B02,NYU_BMS_Melanoma_13059_P3,J17,iTru7_305_05,ACCACGAT,iTru5_109_F,GCTAAGGA,NYU_BMS_Melanoma_13059,AP481403B02 +1,22_001_801_552_503_00,22_001_801_552_503_00,NYU_BMS_Melanoma_13059_P3,L17,iTru7_305_06,GATTACCG,iTru5_110_F,GCCAGAAT,NYU_BMS_Melanoma_13059,22_001_801_552_503_00 +1,EP372981B04,EP372981B04,NYU_BMS_Melanoma_13059_P3,N17,iTru7_305_07,GAGATACG,iTru5_111_F,TAAGTGGC,NYU_BMS_Melanoma_13059,EP372981B04 +1,EP447929B04,EP447929B04,NYU_BMS_Melanoma_13059_P3,P17,iTru7_305_08,CGACGTTA,iTru5_112_F,GCAATGAG,NYU_BMS_Melanoma_13059,EP447929B04 +1,SP573849A04,SP573849A04,NYU_BMS_Melanoma_13059_P3,B19,iTru7_305_09,GAGATGTC,iTru5_101_G,AACTGAGG,NYU_BMS_Melanoma_13059,SP573849A04 +1,SP577399A02,SP577399A02,NYU_BMS_Melanoma_13059_P3,D19,iTru7_305_10,GATTGGAG,iTru5_102_G,AAGGAAGG,NYU_BMS_Melanoma_13059,SP577399A02 +1,EP606656B03,EP606656B03,NYU_BMS_Melanoma_13059_P3,F19,iTru7_305_11,GCAATTCG,iTru5_103_G,AATGGTCG,NYU_BMS_Melanoma_13059,EP606656B03 +1,LP166715A01,LP166715A01,NYU_BMS_Melanoma_13059_P3,H19,iTru7_305_12,CGTCAATG,iTru5_104_G,ACAGCAAG,NYU_BMS_Melanoma_13059,LP166715A01 +1,AP668628B04,AP668628B04,NYU_BMS_Melanoma_13059_P3,J19,iTru7_401_01,ATGCACGA,iTru5_105_G,ACGTATGG,NYU_BMS_Melanoma_13059,AP668628B04 +1,C14,C14,NYU_BMS_Melanoma_13059_P3,L19,iTru7_401_02,ATCGCCAT,iTru5_106_G,ACTGCACT,NYU_BMS_Melanoma_13059,C14 +1,EP446610B02,EP446610B02,NYU_BMS_Melanoma_13059_P3,N19,iTru7_401_03,TCTCGCAA,iTru5_107_G,AGAGTCCA,NYU_BMS_Melanoma_13059,EP446610B02 +1,EP339061B02,EP339061B02,NYU_BMS_Melanoma_13059_P3,P19,iTru7_401_04,ACGACAGA,iTru5_108_G,AGCCTATC,NYU_BMS_Melanoma_13059,EP339061B02 +1,SP681591A04,SP681591A04,NYU_BMS_Melanoma_13059_P3,B21,iTru7_401_05,TTACGGCT,iTru5_109_G,AGGAACAC,NYU_BMS_Melanoma_13059,SP681591A04 +1,EP393712B02,EP393712B02,NYU_BMS_Melanoma_13059_P3,D21,iTru7_401_06,GAGGACTT,iTru5_110_G,AGGTCTGT,NYU_BMS_Melanoma_13059,EP393712B02 +1,EP410041B01,EP410041B01,NYU_BMS_Melanoma_13059_P3,F21,iTru7_401_07,GGCATACT,iTru5_111_G,AGTATGCC,NYU_BMS_Melanoma_13059,EP410041B01 +1,SP453872A01,SP453872A01,NYU_BMS_Melanoma_13059_P3,H21,iTru7_401_08,CGTAGGTT,iTru5_112_G,AGTTCGCA,NYU_BMS_Melanoma_13059,SP453872A01 +1,22_001_710_503_791_00,22_001_710_503_791_00,NYU_BMS_Melanoma_13059_P3,J21,iTru7_401_09,ATATGCGC,iTru5_101_H,TGGAAGCA,NYU_BMS_Melanoma_13059,22_001_710_503_791_00 +1,LP128540A01,LP128540A01,NYU_BMS_Melanoma_13059_P3,L21,iTru7_401_10,GGATGTAG,iTru5_102_H,GTCAGTCA,NYU_BMS_Melanoma_13059,LP128540A01 +1,EP339053B02,EP339053B02,NYU_BMS_Melanoma_13059_P3,N21,iTru7_401_11,CCTGTCAT,iTru5_103_H,GTAACCGA,NYU_BMS_Melanoma_13059,EP339053B02 +1,EP617443B01,EP617443B01,NYU_BMS_Melanoma_13059_P3,P21,iTru7_401_12,TGCTCATG,iTru5_104_H,GTTATGGC,NYU_BMS_Melanoma_13059,EP617443B01 +1,EP190307B01,EP190307B01,NYU_BMS_Melanoma_13059_P3,B23,iTru7_402_01,TGAAGACG,iTru5_105_H,GTAAGCAC,NYU_BMS_Melanoma_13059,EP190307B01 +1,AP795068B04,AP795068B04,NYU_BMS_Melanoma_13059_P3,D23,iTru7_402_02,GTTACGCA,iTru5_106_H,GGAATGTC,NYU_BMS_Melanoma_13059,AP795068B04 +1,LP128541A01,LP128541A01,NYU_BMS_Melanoma_13059_P3,F23,iTru7_402_03,ACTCAGAC,iTru5_107_H,GAGAAGGT,NYU_BMS_Melanoma_13059,LP128541A01 +1,EP584756B04,EP584756B04,NYU_BMS_Melanoma_13059_P3,H23,iTru7_402_04,GTCCACAT,iTru5_108_H,GAGTAGAG,NYU_BMS_Melanoma_13059,EP584756B04 +1,SP284096A02,SP284096A02,NYU_BMS_Melanoma_13059_P3,J23,iTru7_402_05,CGCTAGTA,iTru5_109_H,GCATTGGT,NYU_BMS_Melanoma_13059,SP284096A02 +1,EP431562B04,EP431562B04,NYU_BMS_Melanoma_13059_P3,L23,iTru7_402_06,GAATCCGA,iTru5_110_H,TCCAGCAA,NYU_BMS_Melanoma_13059,EP431562B04 +1,EP685640B01,EP685640B01,NYU_BMS_Melanoma_13059_P3,N23,iTru7_402_07,GAGACGAT,iTru5_111_H,GAATCCGT,NYU_BMS_Melanoma_13059,EP685640B01 +1,EP339059B02,EP339059B02,NYU_BMS_Melanoma_13059_P3,P23,iTru7_402_08,TAAGTGGC,iTru5_112_H,TACATCGG,NYU_BMS_Melanoma_13059,EP339059B02 +1,EP431575B01,EP431575B01,NYU_BMS_Melanoma_13059_P4,B2,iTru7_402_09,ACTGAGGT,iTru5_113_A,ATAACGCC,NYU_BMS_Melanoma_13059,EP431575B01 +1,EP379938B01,EP379938B01,NYU_BMS_Melanoma_13059_P4,D2,iTru7_402_10,TGTACCGT,iTru5_114_A,ATGACAGG,NYU_BMS_Melanoma_13059,EP379938B01 +1,EP529635B02,EP529635B02,NYU_BMS_Melanoma_13059_P4,F2,iTru7_402_11,AGCAAGCA,iTru5_115_A,CAACACAG,NYU_BMS_Melanoma_13059,EP529635B02 +1,EP554506B04,EP554506B04,NYU_BMS_Melanoma_13059_P4,H2,iTru7_402_12,TCTCGTGT,iTru5_116_A,CACCAGTT,NYU_BMS_Melanoma_13059,EP554506B04 +1,EP455757B04,EP455757B04,NYU_BMS_Melanoma_13059_P4,J2,iTru7_115_01,CAAGGTCT,iTru5_117_A,CAGAGTGA,NYU_BMS_Melanoma_13059,EP455757B04 +1,SP491900A02,SP491900A02,NYU_BMS_Melanoma_13059_P4,L2,iTru7_115_02,TAGACGTG,iTru5_118_A,CCGATGTA,NYU_BMS_Melanoma_13059,SP491900A02 +1,LP196272A01,LP196272A01,NYU_BMS_Melanoma_13059_P4,N2,iTru7_115_03,TGAGCTAG,iTru5_119_A,CCTTCCAT,NYU_BMS_Melanoma_13059,LP196272A01 +1,SP704319A04,SP704319A04,NYU_BMS_Melanoma_13059_P4,P2,iTru7_115_04,CTGACACA,iTru5_120_A,CGGTAATC,NYU_BMS_Melanoma_13059,SP704319A04 +1,EP617441B01,EP617441B01,NYU_BMS_Melanoma_13059_P4,B4,iTru7_115_05,ACGGTCTT,iTru5_121_A,CTAGGTTG,NYU_BMS_Melanoma_13059,EP617441B01 +1,AP687591B04,AP687591B04,NYU_BMS_Melanoma_13059_P4,D4,iTru7_115_06,GCTGTTGT,iTru5_122_A,CTCGGTAA,NYU_BMS_Melanoma_13059,AP687591B04 +1,SP640978A02,SP640978A02,NYU_BMS_Melanoma_13059_P4,F4,iTru7_115_07,CACTAGCT,iTru5_123_A,CTGTGGTA,NYU_BMS_Melanoma_13059,SP640978A02 +1,EP981129A02,EP981129A02,NYU_BMS_Melanoma_13059_P4,H4,iTru7_115_08,TGGTACAG,iTru5_124_A,GTACGATC,NYU_BMS_Melanoma_13059,EP981129A02 +1,EP455763B04,EP455763B04,NYU_BMS_Melanoma_13059_P4,J4,iTru7_115_09,AGCACTTC,iTru5_113_B,TCTGTCGT,NYU_BMS_Melanoma_13059,EP455763B04 +1,EP339057B02,EP339057B02,NYU_BMS_Melanoma_13059_P4,L4,iTru7_115_10,GCATACAG,iTru5_114_B,GAATGGCA,NYU_BMS_Melanoma_13059,EP339057B02 +1,SP491897A02,SP491897A02,NYU_BMS_Melanoma_13059_P4,N4,iTru7_115_11,CTTAGGAC,iTru5_115_B,GTGTGTTC,NYU_BMS_Melanoma_13059,SP491897A02 +1,EP980752B04,EP980752B04,NYU_BMS_Melanoma_13059_P4,P4,iTru7_211_01,GCTTCTTG,iTru5_116_B,GGTTGAAC,NYU_BMS_Melanoma_13059,EP980752B04 +1,LP128539A01,LP128539A01,NYU_BMS_Melanoma_13059_P4,B6,iTru7_101_01,ACGTTACC,iTru5_117_B,GGCTCAAT,NYU_BMS_Melanoma_13059,LP128539A01 +1,EP996831B04,EP996831B04,NYU_BMS_Melanoma_13059_P4,D6,iTru7_101_02,CTGTGTTG,iTru5_118_B,TTCGCCAT,NYU_BMS_Melanoma_13059,EP996831B04 +1,EP273332B04,EP273332B04,NYU_BMS_Melanoma_13059_P4,F6,iTru7_101_03,TGAGGTGT,iTru5_119_B,GTCCTTGA,NYU_BMS_Melanoma_13059,EP273332B04 +1,EP483291B04,EP483291B04,NYU_BMS_Melanoma_13059_P4,H6,iTru7_101_04,GATCCATG,iTru5_120_B,TAACGTCG,NYU_BMS_Melanoma_13059,EP483291B04 +1,EP393715B01,EP393715B01,NYU_BMS_Melanoma_13059_P4,J6,iTru7_101_05,GCCTATCA,iTru5_121_B,GAGACCAA,NYU_BMS_Melanoma_13059,EP393715B01 +1,EP617440B01,EP617440B01,NYU_BMS_Melanoma_13059_P4,L6,iTru7_101_06,AACAACCG,iTru5_122_B,GATCAAGG,NYU_BMS_Melanoma_13059,EP617440B01 +1,EP729434A01,EP729434A01,NYU_BMS_Melanoma_13059_P4,N6,iTru7_101_07,ACTCGTTG,iTru5_123_B,GCAACCAT,NYU_BMS_Melanoma_13059,EP729434A01 +1,SP645141A03,SP645141A03,NYU_BMS_Melanoma_13059_P4,P6,iTru7_101_08,CCTATGGT,iTru5_124_B,AAGGAGAC,NYU_BMS_Melanoma_13059,SP645141A03 +1,BLANK4_4A,BLANK4_4A,NYU_BMS_Melanoma_13059_P4,B8,iTru7_101_09,TGTACACC,iTru5_113_C,ATCGGAGA,NYU_BMS_Melanoma_13059,BLANK4.4A +1,BLANK4_4B,BLANK4_4B,NYU_BMS_Melanoma_13059_P4,D8,iTru7_101_10,GTATGCTG,iTru5_114_C,ATGCGCTT,NYU_BMS_Melanoma_13059,BLANK4.4B +1,BLANK4_4C,BLANK4_4C,NYU_BMS_Melanoma_13059_P4,F8,iTru7_101_11,TGATGTCC,iTru5_115_C,CAACCGTA,NYU_BMS_Melanoma_13059,BLANK4.4C +1,BLANK4_4D,BLANK4_4D,NYU_BMS_Melanoma_13059_P4,H8,iTru7_101_12,GTCCTTCT,iTru5_116_C,CACTTCAC,NYU_BMS_Melanoma_13059,BLANK4.4D +1,BLANK4_4E,BLANK4_4E,NYU_BMS_Melanoma_13059_P4,J8,iTru7_102_01,ATAAGGCG,iTru5_117_C,CAGCTAGA,NYU_BMS_Melanoma_13059,BLANK4.4E +1,BLANK4_4F,BLANK4_4F,NYU_BMS_Melanoma_13059_P4,L8,iTru7_102_02,CTTACCTG,iTru5_118_C,CCGTTATG,NYU_BMS_Melanoma_13059,BLANK4.4F +1,BLANK4_4G,BLANK4_4G,NYU_BMS_Melanoma_13059_P4,N8,iTru7_102_03,CGTTGCAA,iTru5_119_C,CGAACAAC,NYU_BMS_Melanoma_13059,BLANK4.4G +1,BLANK4_4H,BLANK4_4H,NYU_BMS_Melanoma_13059_P4,P8,iTru7_102_04,GATTCAGC,iTru5_120_C,CGTAGATG,NYU_BMS_Melanoma_13059,BLANK4.4H +1,SP232114A04,SP232114A04,NYU_BMS_Melanoma_13059_P4,B10,iTru7_102_05,TCACGTTC,iTru5_121_C,CTATGCCT,NYU_BMS_Melanoma_13059,SP232114A04 +1,EP393714B01,EP393714B01,NYU_BMS_Melanoma_13059_P4,D10,iTru7_102_06,TGTGCGTT,iTru5_122_C,CTGATGAG,NYU_BMS_Melanoma_13059,EP393714B01 +1,EP533388B01,EP533388B01,NYU_BMS_Melanoma_13059_P4,F10,iTru7_102_07,TAGTTGCG,iTru5_123_C,CTTCCTTC,NYU_BMS_Melanoma_13059,EP533388B01 +1,EP724905B01,EP724905B01,NYU_BMS_Melanoma_13059_P4,H10,iTru7_102_08,AAGAGCCA,iTru5_124_C,GTCTCATC,NYU_BMS_Melanoma_13059,EP724905B01 +1,EP282108B01,EP282108B01,NYU_BMS_Melanoma_13059_P4,J10,iTru7_102_09,ACAGCTCA,iTru5_113_D,GCGCATAT,NYU_BMS_Melanoma_13059,EP282108B01 +1,EP282107B01,EP282107B01,NYU_BMS_Melanoma_13059_P4,L10,iTru7_102_10,GTTAAGGC,iTru5_114_D,GAAGATCC,NYU_BMS_Melanoma_13059,EP282107B01 +1,EP001625B01,EP001625B01,NYU_BMS_Melanoma_13059_P4,N10,iTru7_102_11,AAGCCACA,iTru5_115_D,GTTGGCAT,NYU_BMS_Melanoma_13059,EP001625B01 +1,EP073209B02,EP073209B02,NYU_BMS_Melanoma_13059_P4,P10,iTru7_102_12,ACACGGTT,iTru5_116_D,GTGAATGG,NYU_BMS_Melanoma_13059,EP073209B02 +1,SP232079A01,SP232079A01,NYU_BMS_Melanoma_13059_P4,B12,iTru7_103_01,CAGCGATT,iTru5_117_D,GTATCGAG,NYU_BMS_Melanoma_13059,SP232079A01 +1,EP772145A02,EP772145A02,NYU_BMS_Melanoma_13059_P4,D12,iTru7_103_02,TAGTGACC,iTru5_118_D,TGCAAGAC,NYU_BMS_Melanoma_13059,EP772145A02 +1,AP771472A04,AP771472A04,NYU_BMS_Melanoma_13059_P4,F12,iTru7_103_03,CGAGACTA,iTru5_119_D,GAGTGTGT,NYU_BMS_Melanoma_13059,AP771472A04 +1,AP223470B01,AP223470B01,NYU_BMS_Melanoma_13059_P4,H12,iTru7_103_04,GACATGGT,iTru5_120_D,TAAGCGCA,NYU_BMS_Melanoma_13059,AP223470B01 +1,SP404412A02,SP404412A02,NYU_BMS_Melanoma_13059_P4,J12,iTru7_103_05,GCATGTCT,iTru5_121_D,TAGCAGGA,NYU_BMS_Melanoma_13059,SP404412A02 +1,EP772143A02,EP772143A02,NYU_BMS_Melanoma_13059_P4,L12,iTru7_103_06,ACTCCATC,iTru5_122_D,GACTACGA,NYU_BMS_Melanoma_13059,EP772143A02 +1,SP408629A01,SP408629A01,NYU_BMS_Melanoma_13059_P4,N12,iTru7_103_07,TGTGACTG,iTru5_123_D,GACGTCAT,NYU_BMS_Melanoma_13059,SP408629A01 +1,EP749735A07,EP749735A07,NYU_BMS_Melanoma_13059_P4,P12,iTru7_103_08,CGAAGAAC,iTru5_124_D,AAGAGGCA,NYU_BMS_Melanoma_13059,EP749735A07 +1,EP846485A01,EP846485A01,NYU_BMS_Melanoma_13059_P4,B14,iTru7_103_09,GGTGTCTT,iTru5_113_E,ATCGTCTC,NYU_BMS_Melanoma_13059,EP846485A01 +1,EP808109A01,EP808109A01,NYU_BMS_Melanoma_13059_P4,D14,iTru7_103_10,AAGAAGGC,iTru5_114_E,ATGGCGAT,NYU_BMS_Melanoma_13059,EP808109A01 +1,SP416130A04,SP416130A04,NYU_BMS_Melanoma_13059_P4,F14,iTru7_103_11,AGGTTCGA,iTru5_115_E,CAAGAAGC,NYU_BMS_Melanoma_13059,SP416130A04 +1,EP882752A01,EP882752A01,NYU_BMS_Melanoma_13059_P4,H14,iTru7_103_12,CATGTTCC,iTru5_116_E,CAGAACTG,NYU_BMS_Melanoma_13059,EP882752A01 +1,AP953594A02,AP953594A02,NYU_BMS_Melanoma_13059_P4,J14,iTru7_104_01,GTGCCATA,iTru5_117_E,CAGGTAAG,NYU_BMS_Melanoma_13059,AP953594A02 +1,AP046324B02,AP046324B02,NYU_BMS_Melanoma_13059_P4,L14,iTru7_104_02,CCTTGTAG,iTru5_118_E,CCTACCTA,NYU_BMS_Melanoma_13059,AP046324B02 +1,AP891020A04,AP891020A04,NYU_BMS_Melanoma_13059_P4,N14,iTru7_104_03,GCTGGATT,iTru5_119_E,CGAAGTCA,NYU_BMS_Melanoma_13059,AP891020A04 +1,EP790023A01,EP790023A01,NYU_BMS_Melanoma_13059_P4,P14,iTru7_104_04,TAACGAGG,iTru5_120_E,CGTCTTCA,NYU_BMS_Melanoma_13059,EP790023A01 +1,EP657386A01,EP657386A01,NYU_BMS_Melanoma_13059_P4,B16,iTru7_104_05,ATGGTTGC,iTru5_121_E,CTCAAGCT,NYU_BMS_Melanoma_13059,EP657386A01 +1,EP805337A01,EP805337A01,NYU_BMS_Melanoma_13059_P4,D16,iTru7_104_06,CCTATACC,iTru5_122_E,CTGCCATA,NYU_BMS_Melanoma_13059,EP805337A01 +1,EP927458A04,EP927458A04,NYU_BMS_Melanoma_13059_P4,F16,iTru7_104_07,TTAGGTCG,iTru5_123_E,CTTGCTAG,NYU_BMS_Melanoma_13059,EP927458A04 +1,AP173299B04,AP173299B04,NYU_BMS_Melanoma_13059_P4,H16,iTru7_104_08,GCAAGATC,iTru5_124_E,GTCTGCAA,NYU_BMS_Melanoma_13059,AP173299B04 +1,EP768164A02,EP768164A02,NYU_BMS_Melanoma_13059_P4,J16,iTru7_104_09,AGAGCCTT,iTru5_113_F,GCTACTCT,NYU_BMS_Melanoma_13059,EP768164A02 +1,EP886422A01,EP886422A01,NYU_BMS_Melanoma_13059_P4,L16,iTru7_104_10,GCAATGGA,iTru5_114_F,TACAGAGC,NYU_BMS_Melanoma_13059,EP886422A01 +1,AP103463B01,AP103463B01,NYU_BMS_Melanoma_13059_P4,N16,iTru7_104_11,CTGGAGTA,iTru5_115_F,GGTCGTAT,NYU_BMS_Melanoma_13059,AP103463B01 +1,AP744361A02,AP744361A02,NYU_BMS_Melanoma_13059_P4,P16,iTru7_104_12,GAACATCG,iTru5_116_F,GTCGTTAC,NYU_BMS_Melanoma_13059,AP744361A02 +1,AP065292B01,AP065292B01,NYU_BMS_Melanoma_13059_P4,B18,iTru7_105_01,GCACAACT,iTru5_117_F,TTCACGGA,NYU_BMS_Melanoma_13059,AP065292B01 +1,SP257517A04,SP257517A04,NYU_BMS_Melanoma_13059_P4,D18,iTru7_105_02,TTCTCTCG,iTru5_118_F,TGCTTGCT,NYU_BMS_Melanoma_13059,SP257517A04 +1,EP790021A04,EP790021A04,NYU_BMS_Melanoma_13059_P4,F18,iTru7_105_03,AACGGTCA,iTru5_119_F,TCTTACGG,NYU_BMS_Melanoma_13059,EP790021A04 +1,EP675075A04,EP675075A04,NYU_BMS_Melanoma_13059_P4,H18,iTru7_105_04,ACAGACCT,iTru5_120_F,TCCTCATG,NYU_BMS_Melanoma_13059,EP675075A04 +1,SP388683A02,SP388683A02,NYU_BMS_Melanoma_13059_P4,J18,iTru7_105_05,TCTCTTCC,iTru5_121_F,GATGTCGA,NYU_BMS_Melanoma_13059,SP388683A02 +1,SP232309A01,SP232309A01,NYU_BMS_Melanoma_13059_P4,L18,iTru7_105_06,AGTGTTGG,iTru5_122_F,GAAGTGCT,NYU_BMS_Melanoma_13059,SP232309A01 +1,EP899038A04,EP899038A04,NYU_BMS_Melanoma_13059_P4,N18,iTru7_105_07,TGGCATGT,iTru5_123_F,TCACTCGA,NYU_BMS_Melanoma_13059,EP899038A04 +1,EP636802A01,EP636802A01,NYU_BMS_Melanoma_13059_P4,P18,iTru7_105_08,AGAAGCGT,iTru5_124_F,ACGCAGTA,NYU_BMS_Melanoma_13059,EP636802A01 +1,AP046327B02,AP046327B02,NYU_BMS_Melanoma_13059_P4,B20,iTru7_105_09,AGCGGAAT,iTru5_113_G,ATCTCCTG,NYU_BMS_Melanoma_13059,AP046327B02 +1,EP905975A04,EP905975A04,NYU_BMS_Melanoma_13059_P4,D20,iTru7_105_10,TAACCGGT,iTru5_114_G,ATGTGGAC,NYU_BMS_Melanoma_13059,EP905975A04 +1,SP410796A02,SP410796A02,NYU_BMS_Melanoma_13059_P4,F20,iTru7_105_11,CATGGAAC,iTru5_115_G,CAAGCCAA,NYU_BMS_Melanoma_13059,SP410796A02 +1,EP784608A01,EP784608A01,NYU_BMS_Melanoma_13059_P4,H20,iTru7_105_12,ATGGTCCA,iTru5_116_G,CAGACGTT,NYU_BMS_Melanoma_13059,EP784608A01 +1,EP808105A01,EP808105A01,NYU_BMS_Melanoma_13059_P4,J20,iTru7_106_01,CTTCTGAG,iTru5_117_G,CATACTCG,NYU_BMS_Melanoma_13059,EP808105A01 +1,SP331134A04,SP331134A04,NYU_BMS_Melanoma_13059_P4,L20,iTru7_106_02,AACCGAAG,iTru5_118_G,CCTGTCAA,NYU_BMS_Melanoma_13059,SP331134A04 +1,EP718688A01,EP718688A01,NYU_BMS_Melanoma_13059_P4,N20,iTru7_106_03,TTCGTACC,iTru5_119_G,CGAGTTAG,NYU_BMS_Melanoma_13059,EP718688A01 +1,SP232270A02,SP232270A02,NYU_BMS_Melanoma_13059_P4,P20,iTru7_106_04,CTGTTAGG,iTru5_120_G,CTAACCTG,NYU_BMS_Melanoma_13059,SP232270A02 +1,EP970001A01,EP970001A01,NYU_BMS_Melanoma_13059_P4,B22,iTru7_106_05,CACAAGTC,iTru5_121_G,CTCCTAGT,NYU_BMS_Melanoma_13059,EP970001A01 +1,EP001624B01,EP001624B01,NYU_BMS_Melanoma_13059_P4,D22,iTru7_106_06,TCTTGACG,iTru5_122_G,CTGTACCA,NYU_BMS_Melanoma_13059,EP001624B01 +1,EP868682A01,EP868682A01,NYU_BMS_Melanoma_13059_P4,F22,iTru7_106_07,CGTCTTGT,iTru5_123_G,GCTACAAC,NYU_BMS_Melanoma_13059,EP868682A01 +1,EP927462A02,EP927462A02,NYU_BMS_Melanoma_13059_P4,H22,iTru7_106_08,CGTGATCA,iTru5_124_G,GTTCTTCG,NYU_BMS_Melanoma_13059,EP927462A02 +1,C3,C3,NYU_BMS_Melanoma_13059_P4,J22,iTru7_106_09,CCAAGTTG,iTru5_113_H,GAGAGTAC,NYU_BMS_Melanoma_13059,C3 +1,EP890158A02,EP890158A02,NYU_BMS_Melanoma_13059_P4,L22,iTru7_106_10,GTACCTTG,iTru5_114_H,GACACAGT,NYU_BMS_Melanoma_13059,EP890158A02 +1,EP023801B04,EP023801B04,NYU_BMS_Melanoma_13059_P4,N22,iTru7_106_11,GACTATGC,iTru5_115_H,TTGCTTGG,NYU_BMS_Melanoma_13059,EP023801B04 +1,EP400447B04,EP400447B04,NYU_BMS_Melanoma_13059_P4,P22,iTru7_106_12,TGGATCAC,iTru5_116_H,GTAGTACC,NYU_BMS_Melanoma_13059,EP400447B04 +1,EP385379B01,EP385379B01,NYU_BMS_Melanoma_13059_P4,B24,iTru7_107_01,CTCTGGTT,iTru5_117_H,TTCGGCTA,NYU_BMS_Melanoma_13059,EP385379B01 +1,EP385387B01,EP385387B01,NYU_BMS_Melanoma_13059_P4,D24,iTru7_107_02,GTTCATGG,iTru5_118_H,TGCACTTG,NYU_BMS_Melanoma_13059,EP385387B01 +1,EP385384B01,EP385384B01,NYU_BMS_Melanoma_13059_P4,F24,iTru7_107_03,GCTGTAAG,iTru5_119_H,TAGAACGC,NYU_BMS_Melanoma_13059,EP385384B01 +1,SP754514A04,SP754514A04,NYU_BMS_Melanoma_13059_P4,H24,iTru7_107_04,GTCGAAGA,iTru5_120_H,GATTGTCC,NYU_BMS_Melanoma_13059,SP754514A04 +1,SP415025A01,SP415025A01,NYU_BMS_Melanoma_13059_P4,J24,iTru7_107_05,GAGCTCAA,iTru5_121_H,GATGCTAC,NYU_BMS_Melanoma_13059,SP415025A01 +1,SP415023A02,SP415023A02,NYU_BMS_Melanoma_13059_P4,L24,iTru7_107_06,TGAACCTG,iTru5_122_H,GAACGGTT,NYU_BMS_Melanoma_13059,SP415023A02 +1,EP400448B04,EP400448B04,NYU_BMS_Melanoma_13059_P4,N24,iTru7_107_07,CCGACTAT,iTru5_123_H,CTCTTGTC,NYU_BMS_Melanoma_13059,EP400448B04 +1,EP479894B04,EP479894B04,NYU_BMS_Melanoma_13059_P4,P24,iTru7_107_08,AGCTAACC,iTru5_124_H,AACGCCTT,NYU_BMS_Melanoma_13059,EP479894B04 +,,,,,,,,,, +[Bioinformatics],,,,,,,,,, +Sample_Project,QiitaID,BarcodesAreRC,ForwardAdapter,ReverseAdapter,HumanFiltering,library_construction_protocol,experiment_design_description,,, +NYU_BMS_Melanoma_13059,13059,False,AACC,GGTT,False,Nextera,Equipment,,, +Feist_11661,11661,False,AACC,GGTT,False,Nextera,Equipment,,, +Gerwick_6123,6123,False,AACC,GGTT,True,Nextera,Equipment,,, +,,,,,,,,,, +[Contact],,,,,,,,,, +Email,Sample_Project,,,,,,,,, +test@lol.com,Feist_11661,,,,,,,,, +,,,,,,,,,, From 1c1e762f4e882d8b387a9b64f279789ca6368a3a Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 18:01:59 -0700 Subject: [PATCH 34/35] Changes based on feedback --- qp_klp/Amplicon.py | 1 + qp_klp/Metagenomic.py | 3 ++- qp_klp/Step.py | 3 ++- qp_klp/klp.py | 15 ++++++++++----- qp_klp/tests/test_amplicon_step.py | 11 +++-------- 5 files changed, 18 insertions(+), 15 deletions(-) diff --git a/qp_klp/Amplicon.py b/qp_klp/Amplicon.py index d9254836..6ddebaed 100644 --- a/qp_klp/Amplicon.py +++ b/qp_klp/Amplicon.py @@ -71,6 +71,7 @@ def quality_control(self): # ConvertJob's output folder/project1, project2 ... projectN. output_folder = join(raw_fastq_files_path, project_name) makedirs(output_folder) + job_output = [join(raw_fastq_files_path, x) for x in listdir(raw_fastq_files_path)] job_output = [x for x in job_output if isfile(x) and x.endswith( diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index a9706b94..1af914b7 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -33,7 +33,8 @@ def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl-convert'] job = super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet.path) - self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'ConvertJob') + + self._failed_samples_audit(job, 'ConvertJob') def quality_control(self): config = self.pipeline.configuration['qc'] diff --git a/qp_klp/Step.py b/qp_klp/Step.py index 8df6c981..f5860a1d 100644 --- a/qp_klp/Step.py +++ b/qp_klp/Step.py @@ -424,7 +424,8 @@ def update_blanks_in_qiita(self, sifs, qclient): 'info')['categories'] # initialize payload w/required dummy categories - data = {i: {c: 1 for c in categories} for i in new_blanks} + data = {i: {c: 'control sample' for c in categories} for i in + new_blanks} # populate payload w/additional columns and/or overwrite # existing columns w/metadata from SIF file. diff --git a/qp_klp/klp.py b/qp_klp/klp.py index 9ee0ec82..22919a14 100644 --- a/qp_klp/klp.py +++ b/qp_klp/klp.py @@ -103,9 +103,13 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): tmp = [x for x in user_input_file['body'] if 'Assay' in x] - if len(tmp) != 1: - return False, None, ("Your uploaded file doesn't appear to be a" - "valid sample-sheet.") + if len(tmp) == 0: + return False, None, ("Assay type is not defined in the " + "sample-sheet") + + if len(tmp) > 1: + return False, None, ("Assay type is defined multiple times within" + "the sample-sheet") pipeline_type = None for p_type in Step.META_TYPES: @@ -113,8 +117,9 @@ def sequence_processing_pipeline(qclient, job_id, parameters, out_dir): pipeline_type = p_type if pipeline_type is None: - return False, None, ("Your uploaded file doesn't appear to be a" - "valid sample-sheet.") + msg = [f"'{x}'" for x in Step.META_TYPES] + return False, None, ("The following Assay types are valid within" + "a sample-sheet: %s" % ', '.join(msg)) elif Pipeline.is_mapping_file(uif_path): # if file is readable as a basic TSV and contains all the required # headers, then treat this as a mapping file, even if it's an invalid diff --git a/qp_klp/tests/test_amplicon_step.py b/qp_klp/tests/test_amplicon_step.py index 4deb1cf8..147aad1e 100644 --- a/qp_klp/tests/test_amplicon_step.py +++ b/qp_klp/tests/test_amplicon_step.py @@ -21,12 +21,9 @@ def test_creation(self): # Test base-class creation method, even though base-class will never # be instantiated by itself in normal usage. - # dummy used for constructor testing. - sn_tid_map_by_project = {} - with self.assertRaisesRegex(ValueError, "A pipeline object is needed" " to initialize Step"): - Amplicon(None, self.qiita_id, sn_tid_map_by_project, None) + Amplicon(None, self.qiita_id, {}, None) # create amplicon pipeline for failure tests. amplicon_pipeline = Pipeline(None, @@ -40,8 +37,7 @@ def test_creation(self): with self.assertRaisesRegex(ValueError, "A Qiita job-id is needed to " "initialize Step"): - Amplicon(amplicon_pipeline, None, - sn_tid_map_by_project, None) + Amplicon(amplicon_pipeline, None, {}, None) with self.assertRaisesRegex(ValueError, "sn_tid_map_by_project is " "needed to initialize Step"): @@ -60,5 +56,4 @@ def test_creation(self): with self.assertRaisesRegex(ValueError, "Cannot create an Amplicon run" " using a metagenomic-" "configured Pipeline."): - Amplicon(metagenomic_pipeline, self.qiita_id, - sn_tid_map_by_project, None) + Amplicon(metagenomic_pipeline, self.qiita_id, {}, None) From b2840f22e219167ab1138acf356a5c4fc193b30c Mon Sep 17 00:00:00 2001 From: Charles Cowart Date: Mon, 22 May 2023 18:22:57 -0700 Subject: [PATCH 35/35] bugfix --- qp_klp/Metagenomic.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/qp_klp/Metagenomic.py b/qp_klp/Metagenomic.py index 1af914b7..a9706b94 100644 --- a/qp_klp/Metagenomic.py +++ b/qp_klp/Metagenomic.py @@ -33,8 +33,7 @@ def convert_bcl_to_fastq(self): config = self.pipeline.configuration['bcl-convert'] job = super()._convert_bcl_to_fastq(config, self.pipeline.sample_sheet.path) - - self._failed_samples_audit(job, 'ConvertJob') + self.fsr.write(job.audit(self.pipeline.get_sample_ids()), 'ConvertJob') def quality_control(self): config = self.pipeline.configuration['qc']