rgee ee_install error: one or more Python packages failed to install [error code 1]

[wudiweishao]

• rgee version:
• R version:
• Operating System:

At submit an issue, please attached the following information of your rgee session:

• You have the Python API installed (from terminal):

earthengine -h

• You can find the credentials file on your system:

library(rgee)
ee_path <- path.expand("~/.config/earthengine/credentials")
file.exists(ee_path)

• You can run a simple EE command from R:

library(rgee)

# Initialize the Earth Engine module.
ee_Initialize()

# Print metadata for a DEM dataset.
print(ee$Image('USGS/SRTMGL1_003')$getInfo())

Attach your Python (reticulate) configuration:

library(reticulate)
py_config()

Description

I want to install the rgee package and but in the installation process, the error accured. I have tried to install the earthengine-api(version==0.1.223) using anoconda3 prompt but after that , the same error as follows.

What I Did

library(rgee)

ee_install()

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\13227\AppData\Local\r-miniconda\envs\r-reticulate

  added / updated specs:
    - numpy
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    certifi-2020.4.5.2         |   py36h9f0ad1d_0         153 KB  conda-forge
    mkl-2020.0                 |              166        98.9 MB
    wheel-0.34.2               |             py_1          24 KB  conda-forge
    wincertstore-0.2           |        py36_1003          13 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        99.1 MB

The following NEW packages will be INSTALLED:

  certifi            conda-forge/win-64::certifi-2020.4.5.2-py36h9f0ad1d_0
  intel-openmp       pkgs/main/win-64::intel-openmp-2020.0-166
  libblas            conda-forge/win-64::libblas-3.8.0-15_mkl
  libcblas           conda-forge/win-64::libcblas-3.8.0-15_mkl
  liblapack          conda-forge/win-64::liblapack-3.8.0-15_mkl
  mkl                pkgs/main/win-64::mkl-2020.0-166
  numpy              conda-forge/win-64::numpy-1.18.5-py36h4d86e3b_0
  pip                conda-forge/noarch::pip-20.1.1-py_1
  python             conda-forge/win-64::python-3.6.10-he025d50_1009_cpython
  python_abi         conda-forge/win-64::python_abi-3.6-1_cp36m
  setuptools         conda-forge/win-64::setuptools-47.3.0-py36h9f0ad1d_0
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py36_1003



Downloading and Extracting Packages
wincertstore-0.2     | 13 KB     | ########## | 100% 
mkl-2020.0           | 98.9 MB   | ########## | 100% 
certifi-2020.4.5.2   | 153 KB    | ########## | 100% 
wheel-0.34.2         | 24 KB     | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate C:\Users\13227\AppData\Local\r-miniconda\envs\r-reticulate
#
# To deactivate an active environment, use
#
#     $ conda deactivate

------------------------------------ Python configuration used to create rgee --
python:         C:/Users/13227/AppData/Local/r-miniconda/envs/r-reticulate/python.exe
libpython:      C:/Users/13227/AppData/Local/r-miniconda/envs/r-reticulate/python36.dll
pythonhome:     C:/Users/13227/AppData/Local/r-miniconda/envs/r-reticulate
version:        3.6.10 (default, Mar  5 2020, 10:17:47) [MSC v.1900 64 bit (AMD64)]
Architecture:   64bit
numpy:          C:/Users/13227/AppData/Local/r-miniconda/envs/r-reticulate/Lib/site-packages/numpy
numpy_version:  1.18.5
-------------------------------------------------------------------------------- 
1. Removing the previous Python Environment (rgee), if it exists ...

2. Creating a Python Environment (rgee)
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\13227\ANACON~1\envs\rgee

  added / updated specs:
    - python


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    openssl-1.1.1g             |       he774522_0         5.7 MB  conda-forge
    ------------------------------------------------------------
                                           Total:         5.7 MB

The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/win-64::ca-certificates-2020.4.5.2-hecda079_0
  certifi            conda-forge/win-64::certifi-2020.4.5.2-py38h32f6830_0
  openssl            conda-forge/win-64::openssl-1.1.1g-he774522_0
  pip                conda-forge/noarch::pip-20.1.1-py_1
  python             conda-forge/win-64::python-3.8.3-cpython_h5fd99cc_0
  python_abi         conda-forge/win-64::python_abi-3.8-1_cp38
  setuptools         conda-forge/win-64::setuptools-47.3.0-py38h32f6830_0
  sqlite             conda-forge/win-64::sqlite-3.30.1-hfa6e2cd_0
  vc                 conda-forge/win-64::vc-14.1-h869be7e_1
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.16.27012-h30e32a0_2
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  wincertstore       conda-forge/win-64::wincertstore-0.2-py38_1003



Downloading and Extracting Packages
openssl-1.1.1g       | 5.7 MB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate rgee
#
# To deactivate an active environment, use
#
#     $ conda deactivate


ee_install want to store the environmental variables: EARTHENGINE_PYTHON 
and EARTHENGINE_PYTHON_ENV in your .Renviron file to use the Python path:
C:\Users\13227\anaconda3\envs\rgee\python.exe in future sessions.
Would you like to continues? [Y/n]:Y

3. The Environment Variable 'EARTHENGINE_PYTHON=C:\Users\13227\anaconda3\envs\rgee\python.exe' 
has been stored in your .Renviron file. Remember that you
can remove EARTHENGINE_PYTHON  and EARTHENGINE_ENV using
 rgee::ee_clean_pyenv().

4. Installing the earthengine-api. Running: 
reticulate::py_install(packages = 'earthengine-api', envname = 'C:/Users/13227/anaconda3/envs/rgee')

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\13227\anaconda3\envs\rgee

  added / updated specs:
    - python


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    openssl-1.1.1g             |       he774522_0         4.8 MB
    ------------------------------------------------------------
                                           Total:         4.8 MB

The following packages will be SUPERSEDED by a higher-priority channel:

  ca-certificates    conda-forge::ca-certificates-2020.4.5~ --> pkgs/main::ca-certificates-2020.1.1-0
  certifi            conda-forge::certifi-2020.4.5.2-py38h~ --> pkgs/main::certifi-2020.4.5.1-py38_0
  openssl                                       conda-forge --> pkgs/main
  python             conda-forge::python-3.8.3-cpython_h5f~ --> pkgs/main::python-3.8.1-h5fd99cc_1



Downloading and Extracting Packages
openssl-1.1.1g       | 4.8 MB    | ########## | 100% 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - earthengine-api==0.1.225

Current channels:

  - https://conda.anaconda.org/conda-forge/win-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/win-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/win-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/msys2/win-64
  - https://repo.anaconda.com/pkgs/msys2/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.


错误: one or more Python packages failed to install [error code 1]
>

[wudiweishao]

I have update my R and RStudio version (
R version 4.0.1, RStudio version 1.3.959)

[csaybar]

@wudiweishao Thanks for reporting this!

This error occurs because the conda repositories you are using have not yet updated to the latest version of earthengine-api. https://anaconda.org/conda-forge/earthengine-api

I thought something like this might happen, so I added a new function in rgee ee_install_upgrade.
You can fix this error by running:

library(rgee)
ee_install_upgrade(version = "0.1.224")

If the problem persists, show me the output error and the following global envs.

Sys.getenv("EARTHENGINE_PYTHON")
Sys.getenv("EARTHENGINE_ENV")

[wudiweishao]

thanks for you timely response!
as your instruction, I have upgrade and restart the RStudio. Now, it worked for the ee_install, but new problem accured when using ee_Initialize(). T he information is in below:
library(rgee)

ee_Initialize()
-- rgee 0.6.1 --------------------------------------- earthengine-api 0.1.224 --
√ email: not_defined
√ Initializing Google Earth Engine:Error in py_call_impl(callable, dots$args, dots$keywords) : URLError: <urlopen error [WinError 10060] 鐢变簬杩炴帴鏂瑰湪涓€娈垫椂闂村悗娌℃湁姝ｇ‘绛斿鎴栬繛鎺ョ殑涓绘満娌℃湁鍙嶅簲锛岃繛鎺ュ皾璇曞け璐ャ€?
ee_Initialize()
-- rgee 0.6.1 --------------------------------------- earthengine-api 0.1.224 --
√ email: not_defined
√ Initializing Google Earth Engine:Error in py_call_impl(callable, dots$args, dots$keywords) : URLError: <urlopen error [WinError 10060] 鐢变簬杩炴帴鏂瑰湪涓€娈垫椂闂村悗娌℃湁姝ｇ‘绛斿鎴栬繛鎺ョ殑涓绘満娌℃湁鍙嶅簲锛岃繛鎺ュ皾璇曞け璐ャ€?
Sys.getenv("EARTHENGINE_PYTHON")
[1] "C:\Users\13227\anaconda3\envs\rgee\python.exe"
Sys.getenv("EARTHENGINE_ENV")
[1] "rgee"

[csaybar]

This doesn't seem to be a problem with rgee but a network problem (WinError 10060). Maybe this could help
gee-community/geemap#92 (comment)
gee-community/geemap#83 (comment)

[wudiweishao]

thank you very much!
frankly speaking, I am still wonder why I can access the code editor, dataset or other application of gee in website with my gee account but I can not have the gee authentication. that's weird.

[csaybar]

Can you run in Python or R this code successfully?. Maybe using a VPN solves the problem.

library(rgee)
ee$Authenticate()

import ee
ee.Authenticate()

[wudiweishao]

same error as before when I run the codd of" library(rgee)
ee$Authenticate()" in RStudio.
I have look through many resources for my problem and I find that if I change the proxy then I can initialize gee.
code:

import geemap
import ee
import os
os.environ['HTTP_PROXY'] = 'http://127.0.0.1:1080'
os.environ['HTTPS_PROXY'] = 'http://127.0.0.1:1080'
ee.Authenticate()
ee.Initialize()
Map = geemap.Map(center=(40, -100), zoom=4)
Map
# Add Earth Engine dataset
image = ee.Image('USGS/SRTMGL1_003')
image = ee.Image('USGS/SRTMGL1_003')

# Set visualization parameters.
vis_params = {
  'min': 0,
  'max': 4000,
  'palette': ['006633', 'E5FFCC', '662A00', 'D8D8D8', 'F5F5F5']}

# Print the elevation of Mount Everest.
xy = ee.Geometry.Point([86.9250, 27.9881])
elev = image.sample(xy, 30).first().get('elevation').getInfo()
print('Mount Everest elevation (m):', elev)

# Add Earth Engine layers to Map
Map.addLayer(image, vis_params, 'STRM DEM', True, 0.5)
Map.addLayer(xy, {'color': 'red'}, 'Mount Everest')

# Set center of the map
Map.centerObject(ee_object=xy, zoom=13)
Map.setCenter(lon=-100, lat=40, zoom=4)

output:
C:\Users\13227\anaconda3\envs\gee\python.exe "D:/geemap/geemap learning"
To authorize access needed by Earth Engine, open the following URL in a web browser and follow the instructions. If the web browser does not start automatically, please manually browse the URL below.

    https://accounts.google.com/o/oauth2/auth?client_id=517222506229-vsmmajv00ul0bs7p89v5m89qs8eb9359.apps.googleusercontent.com&scope=https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fearthengine+https%3A%2F%2Fwww.googleapis.com%2Fauth%2Fdevstorage.full_control&redirect_uri=urn%3Aietf%3Awg%3Aoauth%3A2.0%3Aoob&response_type=code&code_challenge=uHg0meENUidvR0VtPYoiWfJWIaAtTrK5CZ1UtZGZRps&code_challenge_method=S256

The authorization workflow will generate a code, which you should paste in the box below. 
Enter verification code: 4/0wFfn0T265dqyb8eJdFDTRa2NrV4R3irdcLTv__80Pwsg00C_PbcD14

Successfully saved authorization token.
Mount Everest elevation (m): 8729

Process finished with exit code 0

the proxy information in my computer is like this:

[wudiweishao]

however, I use the pycharm, but I can not see the interactive map(the result). so what should I do to show or save my result?
PS, any idear about the solution for the problem in R?
thank you very much

[csaybar]

Unfortunately, I don't know why Map display does not work, but If you want to configure your HTTP_PROXY in R you need to run as follow:

library(rgee)
Sys.setenv(http_proxy='http://127.0.0.1:1080')
ee_Initialize()

[LiuLiangCDUT]

Maybe you can try another browser, such as firefox.