Dockerfile_renv

# Base image https://hub.docker.com/u/rocker/
# docker build -f Dockerfile_renv -t ranibasna/smok_soci_miss_bn_sing_renv .
# docker image name is smok_soci_miss_bn_sing_renv
# this is needed to construct a Docker image for the singularity image and the final docker image pushed to github

FROM rocker/r-ver:latest

LABEL description = "Image for Socio Economic Smoking Bayesian Network analysis Project that will be used to build a singularity image to use on the HPC"

MAINTAINER "Rani Basna" ranibasna@yahoo.com

## install debian packages for the bayesian sampling rjags
RUN apt-get update && apt-get install --no-install-recommends --yes r-cran-rjags \
    libicu-dev \
    make \
    libglpk-dev \
    sudo \
    pandoc \
    libgmp3-dev \
    libxml2-dev \
    zlib1g-dev \
    libjpeg-dev \
    libpng-dev


# install renv package
RUN Rscript -e "install.packages('renv')"

# copy everything to docker, including renv.lock file
RUN mkdir /socioeconomics
COPY renv.lock ./socioeconomics
COPY renv ./socioeconomics

#COPY . /socioeconomics
# set working directory
WORKDIR /socioeconomics

#RUN mkdir data
#RUN mkdir Intermediate/outputs

# restore all the packages
RUN Rscript -e "renv::restore()"

# run R code
CMD Rscript -e "targets::tar_make()"
# CMD ["Rscript", "main.R"]