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config.json.default
executable file
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config.json.default
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{
"defaultSession": {
"drawerPosition": "right",
"drawerWidth": 384,
"widgets": {
"hierarchicalTrackSelector": {
"id": "hierarchicalTrackSelector",
"type": "HierarchicalTrackSelectorWidget",
"initialized": true,
"collapsed": {
"Disease Related Tracks,Animal Diseases": true,
"Disease Related Tracks,Bacterial Infections and Mycoses": true,
"Disease Related Tracks,Cardiovascular Diseases": true,
"Disease Related Tracks,Congenital-Hereditary-Neonatal Diseases and Abnormalities": true,
"Disease Related Tracks,Developmental Diseases": true,
"Disease Related Tracks,Digestive System Diseases": true,
"Disease Related Tracks,Diseases of the Aged": true,
"Disease Related Tracks,Endocrine System Diseases": true,
"Disease Related Tracks,Eye Diseases": true,
"Disease Related Tracks,Female Urogenital Diseases and Pregnancy Complications": true,
"Disease Related Tracks,Hemic and Lymphatic Diseases": true,
"Disease Related Tracks,Immune System Diseases": true,
"Disease Related Tracks,Induced Disorders": true,
"Disease Related Tracks,Male Urogenital Diseases": true,
"Disease Related Tracks,Mental Disorders": true,
"Disease Related Tracks,Musculoskeletal Diseases": true,
"Disease Related Tracks,Neoplasms": true,
"Disease Related Tracks,Nervous System Diseases": true,
"Disease Related Tracks,Nutritional and Metabolic Diseases": true,
"Disease Related Tracks,Occupational Diseases": true,
"Disease Related Tracks,Otorhinolaryngologic Diseases": true,
"Disease Related Tracks,Parasitic Diseases": true,
"Disease Related Tracks,Respiratory Tract Diseases": true,
"Disease Related Tracks,Signs and Symptoms": true,
"Disease Related Tracks,Skin and Connective Tissue Diseases": true,
"Disease Related Tracks,Stomatognathic Diseases": true,
"Disease Related Tracks,Virus Diseases": true,
"Disease Related Tracks,Wounds and Injuries": true,
"Dwinell,F344_DuCrl_Gastrocnemius_F": true,
"Dwinell,F344_DuCrl_Gastrocnemius_M": true,
"Dwinell,F344_DuCrl_LRetro Fat Pad_F": true,
"Dwinell,F344_DuCrl_LRetro Fat Pad_M": true,
"Dwinell,F344_DuCrl_Thymus_F": true,
"Dwinell,F344_DuCrl_Thymus_M": true,
"Dwinell,LE_StmMcwi_Gastrocnemius_F": true,
"Dwinell,LE_StmMcwi_Gastrocnemius_M": true,
"Dwinell,LE_StmMcwi_LRetro Fat Pad_F": true,
"Dwinell,LE_StmMcwi_LRetro Fat Pad_M": true,
"Dwinell,LE_StmMcwi_Thymus_F": true,
"Dwinell,LE_StmMcwi_Thymus_M": true,
"Epigenetics,ATAC-Seq,Adrenal_Gland": true,
"Epigenetics,ATAC-Seq,Amygdala": true,
"Epigenetics,ATAC-Seq,Auditory_Cortex": true,
"Epigenetics,ATAC-Seq,Cerebellum": true,
"Epigenetics,ATAC-Seq,Epididymis": true,
"Epigenetics,ATAC-Seq,Heart": true,
"Epigenetics,ATAC-Seq,Hippocampus": true,
"Epigenetics,ATAC-Seq,Hypothalamus": true,
"Epigenetics,ATAC-Seq,Ileum": true,
"Epigenetics,ATAC-Seq,Kidney": true,
"Epigenetics,ATAC-Seq,Liver": true,
"Epigenetics,ATAC-Seq,Lung": true,
"Epigenetics,ATAC-Seq,Motor_Cortex": true,
"Epigenetics,ATAC-Seq,Olfactory_Bulb": true,
"Epigenetics,ATAC-Seq,Ovary": true,
"Epigenetics,ATAC-Seq,Pancreas": true,
"Epigenetics,ATAC-Seq,Prefrontal_Cortex": true,
"Epigenetics,ATAC-Seq,Primary_Visual_Cortex": true,
"Epigenetics,ATAC-Seq,Somatosensory_Cortex": true,
"Epigenetics,ATAC-Seq,Spermaduct": true,
"Epigenetics,ATAC-Seq,Spleen": true,
"Epigenetics,ATAC-Seq,Striatum": true,
"Epigenetics,ATAC-Seq,Testis": true,
"Epigenetics,ATAC-Seq,Thalamus": true,
"Epigenetics,ATAC-Seq,Thymus": true,
"Epigenetics,ChIP-Seq,Denervated Gastrocnemius Muscle": true,
"Epigenetics,ChIP-Seq,Gastrocnemius Muscle": true,
"Epigenetics,ChIP-Seq,Liver": true,
"Gene Models,Ensembl Gene Features": true,
"Gene Models,NCBI Gene Features": false,
"Gene-Chemical Interaction Tracks,Biological Role,Aetiopathogenetic Role": true,
"Gene-Chemical Interaction Tracks,Biological Role,Antigen": true,
"Gene-Chemical Interaction Tracks,Biological Role,Antimicrobial Agent": true,
"Gene-Chemical Interaction Tracks,Biological Role,Antimutagen": true,
"Gene-Chemical Interaction Tracks,Biological Role,Biochemical Role": true,
"Gene-Chemical Interaction Tracks,Biological Role,Biophysical Role": true,
"Gene-Chemical Interaction Tracks,Biological Role,Epitope": true,
"Gene-Chemical Interaction Tracks,Biological Role,Fixative": true,
"Gene-Chemical Interaction Tracks,Biological Role,Glutathione Depleting Agent": true,
"Gene-Chemical Interaction Tracks,Biological Role,Growth Regulator": true,
"Gene-Chemical Interaction Tracks,Biological Role,Hapten": true,
"Gene-Chemical Interaction Tracks,Biological Role,Immunomodulator": true,
"Gene-Chemical Interaction Tracks,Biological Role,Inhibitor": true,
"Gene-Chemical Interaction Tracks,Biological Role,Insect Attractant": true,
"Gene-Chemical Interaction Tracks,Biological Role,Mitogen": true,
"Gene-Chemical Interaction Tracks,Biological Role,Molecular Messenger": true,
"Gene-Chemical Interaction Tracks,Biological Role,Osmolyte": true,
"Gene-Chemical Interaction Tracks,Biological Role,Pharmacological Role": true,
"Gene-Chemical Interaction Tracks,Biological Role,Physiological Role": true,
"Gene-Chemical Interaction Tracks,Biological Role,Poison": true,
"Gene-Chemical Interaction Tracks,Biological Role,Prohormone": true,
"Gene-Chemical Interaction Tracks,Biological Role,Provitamin": true,
"Gene-Chemical Interaction Tracks,Biological Role,Specialized Proresolving Mediator": true,
"Gene-Chemical Interaction Tracks,Biological Role,Xenobiotic": true,
"QTLs": true,
"RNA-Seq": true,
"Strains": true,
"Synteny": true,
"Variants,Damaging Variants": true,
"Variants,European Variation Archive": true,
"Variants,Micro Satellite Markers": true,
"Variants,Phenotypic Alleles Variants": true,
"Variants,Strain Specific Variants": true,
"Tracks": true,
"Disease Related Tracks": true,
"Dwinell": true,
"Epigenetics": true,
"Gene Models": false,
"Gene-Chemical Interaction Tracks": true,
"Variants": true
},
"view": "ngFyJVa3W"
}
},
"activeWidgets": {
"hierarchicalTrackSelector": "hierarchicalTrackSelector"
},
"minimized": false,
"id": "-yoorQFod-",
"name": "New session 6/10/2024, 2:15:12 PM",
"margin": 0,
"views": [
{
"id": "ngFyJVa3W",
"minimized": false,
"type": "LinearGenomeView",
"offsetPx": 7571,
"bpPerPx": 1626.6370656370657,
"displayedRegions": [
{
"refName": "Chr4",
"start": 0,
"end": 182687754,
"reversed": false,
"assemblyName": "mRatBN7.2"
}
],
"tracks": [
{
"id": "UjTkps-yI",
"type": "FeatureTrack",
"configuration": "Rat mRatBN7.2 (rn7) Genes and Transcripts-mRatBN7.2",
"minimized": false,
"displays": [
{
"id": "njgQql_fck",
"type": "LinearBasicDisplay",
"configuration": "Rat mRatBN7.2 (rn7) Genes and Transcripts-mRatBN7.2-LinearBasicDisplay"
}
]
}
],
"hideHeader": false,
"hideHeaderOverview": false,
"hideNoTracksActive": false,
"trackSelectorType": "hierarchical",
"trackLabels": "offset",
"showCenterLine": false,
"showCytobandsSetting": true,
"showGridlines": true
}
],
"sessionTracks": [],
"sessionAssemblies": [],
"temporaryAssemblies": [],
"connectionInstances": [],
"sessionConnections": [],
"sessionPlugins": []
},
"configuration": {
"hierarchical": {
"sort": {
"trackNames": true,
"categories": true
},
"defaultCollapsed": {
"topLevelCategories": true,
"subCategories": true
}
},
"logoPath": {
"uri": "https://rgd.mcw.edu/common/images/rgd_logo_jbrowse.png"
},
"theme" :{
"palette": {
"primary": {
"main": "#000000"
},
"secondary": {
"main": "#1980b5"
},
"tertiary": {
"main": "#99BFE5"
},
"quaternary": {
"main": "#770C0E"
}
}
}
}
}