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Compbio Final Project

  • Please see final_project.ipynb to learn about our methods and final project
  • create_database.ipynb provides code to create a database connecting mp3 pathology and genbank information
  • analyze_database.ipynb provides code to load such a database. It also shows some example queries. Finally, it provides some tools to analyze the database.
  • salmonella_database_truncated.pkl is an example database using some of the class data