- changed package title to omit the leading "R" - from "R Interface to ..." to "Interface to ..."
- for boolean defaults, use "= TRUE" style, instead of shorthand "= T"
- replaced wrapped examples from "dontrun{}" to "donttest{}"
- Change http://ropensci.org/packages to https://reopensci.org/packages/ to address a "note" due to 403 forbidden and a 301 redirect.
- Change https://globalbioticinteractions.org to https://www.globalbioticinteractions.org to address a "note" due to 301 redirect.
- Remove travis-ci badge in README.md that caused a "note" due to 301 redirect.
- Remove references to Cypher query support in vignettes.
- Removing support for directly executing Cypher queries: cypher queries are open ended, caused intermittent test errors, and subject to change in future neo4j upgrades.
-
Adding warning message when query generates more results than can be returned. Big thanks for Helen Waters for their contributions @H-Waters https://github.com/H-Waters via https://github.com/ropensci/# rglobi/pull/45
-
update NEWS format
- improve test cases to skip with message if web apis are unavailable
- improve test cases to include error handling
- added section on returnobservations=T in getting started vignette as suggested by @ZekeMarshall in https://github.com/ropensci/# rglobi/issues/38#issuecomment-897603331 .
- replace broken url http://spatialreference.org/ref/epsg/wgs-84/ with https://en.wikipedia.org/wiki/World_Geodetic_System .
- minor changes by @jimhester (thanks Jim!) to prepare for readr 2.0.0 release via https://github.com/ropensci/# rglobi/pull/37 .
- include markdown in DESCRIPTION suggests list as instructed in yihui/knitr#1864
- update urls as suggested by cran release checks
- exclude .github workflow directory from R build
- use query cache for unit tests to make tests less dependent of state of online api
- Use readr package to handle incoming csv streams to help avoid encoding issues on Windows . Also see https://github.com/ropensci/# rglobi/issues/33 .
- remove debug messages
- updates reference to https://github.com/globalbioticinteractions/globalbioticinteractions after repo migration from https://github.com/jhpoelen/eol-globi-data .
- show informative messages like
GloBI data services are not available at [api.globalbioticinteractions.org]. Are you connected to the internet?
when internet resources are not available. Suggested by Brian D. Ripley . Also see https://github.com/ropensci/# rglobi/issues/31 .
- Update cypher query endpoint after server upgrade to neo4j v2.3.12
- Use utils::download.file in an attempt to avoid intermittent download issues on debian.
- Enforce utf-8 encoding when reading csv, take 2.
- Enforce utf-8 encoding when reading csv.
- Fix yet another test error caused by overly restrictive assertion.
- Fix another test error caused by overly restrictive assertion.
- Fix test error caused by overly restrictive assertion.
- After switching to https endpoint for GloBI APIs, the default configuration needed updating to ensure existing functions to continue to work.
-
a rglobi user requested to search by interactions type (see https://github.com/ropensci/# rglobi/issues/23). The functionality was implemented by adding method
get_interactions_by_type
. -
a rglobi user requested to search by interactions type (see https://github.com/ropensci/# rglobi/issues/23). The functionality was implemented by adding method
get_interactions_by_type
.
- make get_interaction_matrix use same name matching method as get_interactions . See globalbioticinteractions/globalbioticinteractions.github.io#63 .
- Switch neo4j port from 7474 to 80 following changes to the neo4j endpoint.