This is a collection of python notebooks that walk through the process of an IBDM analysis. The notebooks use a set of open data from the cancer imaging archive, more details can be found here: https://wiki.cancerimagingarchive.net/display/Public/HNSCC
The first notebook shows the process of image registration, and how to set it up for IBDM.
The second notebook shows how to perform a simple binary IBDM analysis using a t-test
The third notebook shows using weight loss as a continuous outcome variable in IBDM.