diff --git a/configure.ac b/configure.ac
index 79c115fa922..209bb28a3a1 100644
--- a/configure.ac
+++ b/configure.ac
@@ -438,7 +438,7 @@ dnl AC_CONFIG_HEADERS([config.h])
 AC_CONFIG_FILES([build/make/Makefile-auto build/make/Makefile])
 AC_CONFIG_FILES([src/bin/sage-env-config src/bin/sage-src-env-config build/bin/sage-build-env-config])
 
-AC_CONFIG_FILES([build/pkgs/sage_conf/src/sage_conf.py build/pkgs/sage_conf/src/setup.cfg])
+AC_CONFIG_FILES([sage_conf/sage_conf.py sage_conf/setup.cfg])
 
 dnl Create basic directories needed for Sage
 AC_CONFIG_COMMANDS(mkdirs,