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1. compare_svs compare_svs Public

   These scripts were developed for a project at UCLA to compare structural variants found by various tools to known structural variants. It includes a very primitive structural variant type categorizer.

   Python

2. uniqueperm uniqueperm Public

   R

3. svfindermanual svfindermanual Public

   Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combinati…

   Shell

4. samanthaleejensen.github.io samanthaleejensen.github.io Public

5. plumbCNV plumbCNV Public

   Forked from nicholasjcooper/plumbCNV

   generalized version of Nicholas Cooper's plumbCNV for CNV calling from microarray data

   R

6. merge_and_filter merge_and_filter Public

   Code for merging Plink genotyping files with different reference genomes and genotyping chips.

   Shell