From 6d014098181db2e17ea4535ea1c6163eab9be52f Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Fri, 23 Jun 2023 11:15:59 +0200 Subject: [PATCH 01/14] build: allow linking libraries in development --- angular.json | 1 + 1 file changed, 1 insertion(+) diff --git a/angular.json b/angular.json index 5bb8ac1..d0698c2 100644 --- a/angular.json +++ b/angular.json @@ -64,6 +64,7 @@ "localize": ["de"] }, "development": { + "preserveSymlinks": true, "buildOptimizer": false, "optimization": false, "vendorChunk": true, From 89ec75809d3aa85d296c2b30f693c5130c66fac1 Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Fri, 23 Jun 2023 11:17:18 +0200 Subject: [PATCH 02/14] refactor: adjusted search tree according to feedback --- src/assets/catalogue.ts | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/assets/catalogue.ts b/src/assets/catalogue.ts index 48afb8b..7a8e49e 100644 --- a/src/assets/catalogue.ts +++ b/src/assets/catalogue.ts @@ -6,6 +6,7 @@ import { Lokalisation } from './lokalisation'; import { MolecularMarker } from './molecular-marker'; export const staticCatalogue: Array = [ + new Category('tumor_entity', 'Tumorentität', Entities), new Category('patient', 'Patient', [ new Criteria( 'gender', @@ -26,7 +27,7 @@ export const staticCatalogue: Array = [ }, { key: 'other', - de: 'Sonstiges / intersexuell', + de: 'divers, sonstiges / intersexuell', en: 'diverse', }, { @@ -61,7 +62,6 @@ export const staticCatalogue: Array = [ ] ), ]), - new Category('tumor_entity', 'Tumorentität', Entities), new Category('tumor_classification', 'Klassifikation von Tumoren', [ new Criteria( 'year_of_diagnosis', From 5b660dfa829505aea39c920f715abb5636703176 Mon Sep 17 00:00:00 2001 From: Martin Lablans <6804500+lablans@users.noreply.github.com> Date: Fri, 30 Jun 2023 12:11:08 +0200 Subject: [PATCH 03/14] chore: add site Berlin to new DKTK broker --- src/environments/environment.ts | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/environments/environment.ts b/src/environments/environment.ts index e0c4c45..804d9b6 100644 --- a/src/environments/environment.ts +++ b/src/environments/environment.ts @@ -20,7 +20,6 @@ export const environment = { 'dev.broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/test/'), [ - 'berlin', 'bonn', 'dresden', 'essen', @@ -36,7 +35,7 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg'] + ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin'] ), ], [ From d4d91d05da25756ad21b6b374397ac99d6e0c65e Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Fri, 30 Jun 2023 12:29:58 +0200 Subject: [PATCH 04/14] chore: move dresden alongside berlin --- src/environments/environment.prod.ts | 2 +- src/environments/environment.ts | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/src/environments/environment.prod.ts b/src/environments/environment.prod.ts index 07475ad..a08edb9 100644 --- a/src/environments/environment.prod.ts +++ b/src/environments/environment.prod.ts @@ -15,7 +15,7 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.data.dktk.dkfz.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg'] + ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden'] ), ], [ diff --git a/src/environments/environment.ts b/src/environments/environment.ts index 804d9b6..0a32a8a 100644 --- a/src/environments/environment.ts +++ b/src/environments/environment.ts @@ -21,7 +21,6 @@ export const environment = { new URL('https://backend.demo.lens.samply.de/test/'), [ 'bonn', - 'dresden', 'essen', 'frankfurt', 'hannover', @@ -35,7 +34,7 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin'] + ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden'] ), ], [ From 7791405a4f78685134b6af6d1246e8bea690a59e Mon Sep 17 00:00:00 2001 From: lablans Date: Fri, 30 Jun 2023 10:51:03 +0000 Subject: [PATCH 05/14] refactor: rename application to dktk-explorer --- README.md | 4 ++-- src/app/app.component.spec.ts | 4 ++-- src/app/app.component.ts | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index b1cb499..4396873 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,5 @@ -# DKTK/CCP Navigator +# DKTK/CCP Explorer -This project holds the DKTK/CCP Navigator, the German Cancer Consortium's federated search provided by the [DKTK Clinical Communication Platform](https://dktk.dkfz.de/en/clinical-platform). +This project holds the DKTK/CCP Explorer, the German Cancer Consortium's federated search provided by the [DKTK Clinical Communication Platform](https://dktk.dkfz.de/en/clinical-platform). For all technical information, please refer to the repository of the [Samply.Lens federated search toolkit](https://github.com/samply/lens). \ No newline at end of file diff --git a/src/app/app.component.spec.ts b/src/app/app.component.spec.ts index 8822849..d4eccf0 100644 --- a/src/app/app.component.spec.ts +++ b/src/app/app.component.spec.ts @@ -57,9 +57,9 @@ describe('AppComponent', () => { expect(app).toBeTruthy(); }); - it(`should have as title 'DKTK/CCP Navigator'`, () => { + it(`should have as title 'DKTK/CCP Explorer'`, () => { const fixture = TestBed.createComponent(AppComponent); const app = fixture.componentInstance; - expect(app.title.getTitle()).toEqual('DKTK/CCP Navigator'); + expect(app.title.getTitle()).toEqual('DKTK/CCP Explorer'); }); }); diff --git a/src/app/app.component.ts b/src/app/app.component.ts index 1f3cd93..177e5bc 100644 --- a/src/app/app.component.ts +++ b/src/app/app.component.ts @@ -13,7 +13,7 @@ import { }) export class AppComponent { constructor(public title: Title) { - title.setTitle('DKTK/CCP Navigator'); + title.setTitle('DKTK/CCP Explorer'); } public primaryButtonColors: primaryButtonColors = { From bb78f0bd5b2e9cebb75662b1af37af37838c9bbc Mon Sep 17 00:00:00 2001 From: Martin Lablans <6804500+lablans@users.noreply.github.com> Date: Mon, 3 Jul 2023 13:08:55 +0200 Subject: [PATCH 06/14] =?UTF-8?q?chore:=20move=20M=C3=BCnchen=20(LMU)=20to?= =?UTF-8?q?=20prod=20broker?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- src/environments/environment.ts | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/environments/environment.ts b/src/environments/environment.ts index 0a32a8a..802891c 100644 --- a/src/environments/environment.ts +++ b/src/environments/environment.ts @@ -25,7 +25,6 @@ export const environment = { 'frankfurt', 'hannover', 'mainz', - 'muenchen-lmu', 'ulm', 'wuerzburg', ] @@ -34,7 +33,7 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden'] + ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden', 'muenchen-lmu'] ), ], [ From 99405537b8da4ea2704abb17fb12942a21e1bc0b Mon Sep 17 00:00:00 2001 From: Patrick Skowronek Date: Mon, 3 Jul 2023 13:28:14 +0200 Subject: [PATCH 07/14] chore: fixed styling --- src/environments/environment.ts | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/src/environments/environment.ts b/src/environments/environment.ts index 802891c..704a860 100644 --- a/src/environments/environment.ts +++ b/src/environments/environment.ts @@ -19,21 +19,21 @@ export const environment = { new Beam( 'dev.broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/test/'), - [ - 'bonn', - 'essen', - 'frankfurt', - 'hannover', - 'mainz', - 'ulm', - 'wuerzburg', - ] + ['bonn', 'essen', 'frankfurt', 'hannover', 'mainz', 'ulm', 'wuerzburg'] ), // NOTE: This is a temporary workaround while switching the sites to the production system new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden', 'muenchen-lmu'] + [ + 'mannheim', + 'freiburg', + 'muenchen-tum', + 'hamburg', + 'berlin', + 'dresden', + 'muenchen-lmu', + ] ), ], [ From 15f319e030141ec49958282d68de510fad105111 Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Mon, 3 Jul 2023 16:33:02 +0200 Subject: [PATCH 08/14] refactor: adjusted layout of header and footer --- src/app/app.component.css | 16 +++++++++++++++- src/app/app.component.html | 24 ++++++++++++++++-------- 2 files changed, 31 insertions(+), 9 deletions(-) diff --git a/src/app/app.component.css b/src/app/app.component.css index f33f908..5aac278 100644 --- a/src/app/app.component.css +++ b/src/app/app.component.css @@ -32,7 +32,21 @@ display: flex; flex-flow: row; align-items: center; - justify-content: space-between; + justify-content: center; +} + +.line > * { + flex: 1; + display: flex; + justify-content: center; +} + +.line > *:first-child { + justify-content: start; +} + +.line > *:last-child { + justify-content: end; } .main { diff --git a/src/app/app.component.html b/src/app/app.component.html index 6257d01..226abf3 100644 --- a/src/app/app.component.html +++ b/src/app/app.component.html @@ -1,14 +1,22 @@
- Clinical Communication Platform (CCP) -
- -
-
-
- Made with ♥ and samply/lens-core. + CCP-Explorer
-
+ + + From eaa3e2a7f61c5835ec6dd9ca5710a8c363f3374d Mon Sep 17 00:00:00 2001 From: Martin Lablans <6804500+lablans@users.noreply.github.com> Date: Thu, 6 Jul 2023 08:33:51 +0200 Subject: [PATCH 09/14] refactor: don't shorten ccp in header --- src/app/app.component.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/app/app.component.html b/src/app/app.component.html index 226abf3..c428f8a 100644 --- a/src/app/app.component.html +++ b/src/app/app.component.html @@ -1,7 +1,7 @@
- CCP-Explorer + Clinical Communication Platform: Explorer
From efae9ecc7d7ceddf3ae3d4be0a0179b9e630779e Mon Sep 17 00:00:00 2001 From: Patrick Skowronek Date: Thu, 6 Jul 2023 13:52:50 +0200 Subject: [PATCH 10/14] chore: switched mainz from dev to prod --- src/environments/environment.prod.ts | 2 +- src/environments/environment.ts | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/src/environments/environment.prod.ts b/src/environments/environment.prod.ts index a08edb9..a8bc309 100644 --- a/src/environments/environment.prod.ts +++ b/src/environments/environment.prod.ts @@ -15,7 +15,7 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.data.dktk.dkfz.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'dresden'] + ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'mainz', 'dresden'] ), ], [ diff --git a/src/environments/environment.ts b/src/environments/environment.ts index 704a860..f7f54f9 100644 --- a/src/environments/environment.ts +++ b/src/environments/environment.ts @@ -19,7 +19,7 @@ export const environment = { new Beam( 'dev.broker.ccp-it.dktk.dkfz.de', new URL('https://backend.demo.lens.samply.de/test/'), - ['bonn', 'essen', 'frankfurt', 'hannover', 'mainz', 'ulm', 'wuerzburg'] + ['bonn', 'essen', 'frankfurt', 'hannover', 'ulm', 'wuerzburg'] ), // NOTE: This is a temporary workaround while switching the sites to the production system new Beam( @@ -32,6 +32,7 @@ export const environment = { 'hamburg', 'berlin', 'dresden', + 'mainz', 'muenchen-lmu', ] ), From f7804c6687c9bfeda7f9d81fa3fe85fa51b4bc05 Mon Sep 17 00:00:00 2001 From: Patrick Skowronek Date: Thu, 6 Jul 2023 13:55:52 +0200 Subject: [PATCH 11/14] fix: styling --- src/environments/environment.prod.ts | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/src/environments/environment.prod.ts b/src/environments/environment.prod.ts index a8bc309..c5988ba 100644 --- a/src/environments/environment.prod.ts +++ b/src/environments/environment.prod.ts @@ -15,7 +15,15 @@ export const environment = { new Beam( 'broker.ccp-it.dktk.dkfz.de', new URL('https://backend.data.dktk.dkfz.de/prod/'), - ['mannheim', 'freiburg', 'muenchen-tum', 'hamburg', 'berlin', 'mainz', 'dresden'] + [ + 'mannheim', + 'freiburg', + 'muenchen-tum', + 'hamburg', + 'berlin', + 'mainz', + 'dresden', + ] ), ], [ From c9e57af0aa2dfa976498b6e797d556eff9f1acaf Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Wed, 12 Jul 2023 12:38:07 +0200 Subject: [PATCH 12/14] refactor: re-arrange catalogue --- src/app/app.component.html | 4 ++-- src/assets/catalogue.ts | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/app/app.component.html b/src/app/app.component.html index c428f8a..b0dd023 100644 --- a/src/app/app.component.html +++ b/src/app/app.component.html @@ -1,7 +1,7 @@
- Clinical Communication Platform: Explorer + CCP Explorer
@@ -16,7 +16,7 @@ © 2023  - Clinical Communication Plattform (CCP) + Clinical Communication Platform (CCP)
diff --git a/src/assets/catalogue.ts b/src/assets/catalogue.ts index 7a8e49e..44cf465 100644 --- a/src/assets/catalogue.ts +++ b/src/assets/catalogue.ts @@ -6,7 +6,6 @@ import { Lokalisation } from './lokalisation'; import { MolecularMarker } from './molecular-marker'; export const staticCatalogue: Array = [ - new Category('tumor_entity', 'Tumorentität', Entities), new Category('patient', 'Patient', [ new Criteria( 'gender', @@ -37,6 +36,7 @@ export const staticCatalogue: Array = [ }, ] ), + new Category('tumor_entity', 'Tumorentität', Entities), new Criteria( '75186-7', { de: 'Vitalstatus', en: 'Vital status' }, From 609efd8e68c2962ffbb973db89052f0c66711541 Mon Sep 17 00:00:00 2001 From: Torben Brenner Date: Thu, 13 Jul 2023 10:30:42 +0200 Subject: [PATCH 13/14] chore: updated dependencies --- package-lock.json | 731 +++++++++++++++++++++++++--------------------- 1 file changed, 403 insertions(+), 328 deletions(-) diff --git a/package-lock.json b/package-lock.json index ab6b9c9..faf2fda 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "lens-demo", - "version": "0.2.1", + "version": "0.2.2", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "lens-demo", - "version": "0.2.1", + "version": "0.2.2", "license": "SEE LICENSE IN LICENSE.md", "dependencies": { "@angular/animations": "^15.1.0", @@ -57,6 +57,15 @@ "webpack-bundle-analyzer": "^4.9.0" } }, + "node_modules/@aashutoshrathi/word-wrap": { + "version": "1.2.6", + "resolved": "https://registry.npmjs.org/@aashutoshrathi/word-wrap/-/word-wrap-1.2.6.tgz", + "integrity": "sha512-1Yjs2SvM8TflER/OD3cOjhWWOZb58A2t7wpE2S9XfBYTiIl+XFhQG2bjy4Pu1I+EAlCNUzRDYDdFwFYUKvXcIA==", + "dev": true, + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/@ampproject/remapping": { "version": "2.2.0", "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.0.tgz", @@ -71,12 +80,12 @@ } }, "node_modules/@angular-devkit/architect": { - "version": "0.1502.8", - "resolved": "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1502.8.tgz", - "integrity": "sha512-rTltw2ABHrcKc8EGimALvXmrDTP5hlNbEy6nYolJoXEI9EwHgriWrVLVPs3OEF+/ed47dbJi9EGOXUOgzgpB5A==", + "version": "0.1502.9", + "resolved": "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1502.9.tgz", + "integrity": "sha512-CFn+LbtYeLG7WqO+BBSjogl764StHpwgfJnNAXQ/3UouUktZ92z4lxhUm0PwIPb5k0lILsf81ubcS1vzwoXEEg==", "dev": true, "dependencies": { - "@angular-devkit/core": "15.2.8", + "@angular-devkit/core": "15.2.9", "rxjs": "6.6.7" }, "engines": { @@ -104,15 +113,15 @@ "dev": true }, "node_modules/@angular-devkit/build-angular": { - "version": "15.2.8", - "resolved": "https://registry.npmjs.org/@angular-devkit/build-angular/-/build-angular-15.2.8.tgz", - "integrity": "sha512-TGDnXhhOG6h6TOrWWzfnkha7wYBOXi7iJc1o1w1VKCayE3T6TZZdF847aK66vL9KG7AKYVdGhWEGw2WBHUBUpg==", + "version": "15.2.9", + "resolved": "https://registry.npmjs.org/@angular-devkit/build-angular/-/build-angular-15.2.9.tgz", + "integrity": "sha512-djOo2Q22zLrxPccSbINz93hD+pES/nNPoze4Ys/0IdtMlLmxO/YGsA+FG5eNeNAf2jK/JRoNydaYOh7XpGoCzA==", "dev": true, "dependencies": { "@ampproject/remapping": "2.2.0", - "@angular-devkit/architect": "0.1502.8", - "@angular-devkit/build-webpack": "0.1502.8", - "@angular-devkit/core": "15.2.8", + "@angular-devkit/architect": "0.1502.9", + "@angular-devkit/build-webpack": "0.1502.9", + "@angular-devkit/core": "15.2.9", "@babel/core": "7.20.12", "@babel/generator": "7.20.14", "@babel/helper-annotate-as-pure": "7.18.6", @@ -124,7 +133,7 @@ "@babel/runtime": "7.20.13", "@babel/template": "7.20.7", "@discoveryjs/json-ext": "0.5.7", - 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"version": "0.2.1", + "version": "0.2.2", "license": "SEE LICENSE IN LICENSE.md", "scripts": { "ng": "ng",